Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8J2G	35949	2025-01-14	2023-04-14	3.4	3.72	3.48	3.7	0.010	1.14	0.0	0.06	10.18	0.01	2.033	3.24	0.00	10.7	89.3	0.0	-6.39	0.59	0.79	3.09	3.7	0.003	0.74	0.0	0.04	14.65	0.00	2.553	2.35	1.81	8.1	91.9	0.0	-2.70	1.68	0.55	0.78	2.11	5058	650	2	0	0	0	0	logfile
✘	8J26	35945	2025-01-14	2023-04-14	3.4	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5406	427	6	90	1	0	0	logfile
✔	8J20	35940	2025-01-15	2023-04-14	3.2	2.23	3.26	2.1	0.006	0.71	2.0	0.06	17.90	0.00	2.197	10.83	0.62	4.4	95.0	0.5	0.12	0.74	0.73	1.15	2.0	0.005	0.75	0.0	0.05	18.10	0.01	2.467	12.03	4.89	6.1	93.5	0.4	-0.50	1.16	0.76	0.77	1.60	8832	1125	6	0	2	0	0	logfile
✔	8SHF	40486	2025-01-21	2023-04-14	3.0	3.54	3.05	3.3	0.004	0.55	0.0	0.04	14.21	0.00	1.934	7.12	0.00	3.3	96.7	0.0	1.57	0.85	0.88	2.62	3.3	0.003	0.58	0.0	0.04	15.54	0.00	1.170	6.35	0.85	3.4	96.6	0.0	1.72	0.29	0.85	0.89	2.32	67730	8797	50	0	48	19	0	logfile
✔	8SHN	40489	2025-01-21	2023-04-14	2.8	3.49	2.91	3.2	0.004	0.53	0.0	0.04	13.80	0.00	1.936	7.01	0.00	3.0	97.0	0.0	1.72	0.86	0.89	2.67	3.2	0.002	0.57	0.0	0.04	15.20	0.00	1.594	5.89	0.67	3.1	96.9	0.0	1.81	0.26	0.83	0.86	2.40	66003	8578	49	0	48	19	0	logfile
✔	8SHG	40487	2025-01-22	2023-04-14	2.8	3.46	2.87	3.2	0.004	0.52	0.0	0.04	13.86	0.00	1.958	6.91	0.00	3.2	96.7	0.0	1.72	0.85	0.87	2.79	3.2	0.004	0.60	0.0	0.04	15.22	0.00	1.369	5.75	0.60	3.4	96.6	0.0	1.63	0.26	0.84	0.87	2.67	67663	8787	50	0	48	19	0	logfile
✔	8SHo	40490	2025-01-21	2023-04-14	3.0	3.47	3.07	3.3	0.006	0.57	0.0	0.04	14.70	0.00	1.924	7.41	0.01	3.8	96.2	0.0	1.54	0.83	0.88	2.71	3.3	0.005	0.61	0.0	0.04	15.81	0.00	1.221	6.13	0.93	3.9	96.1	0.0	1.50	1.52	0.83	0.89	2.49	67725	8791	50	0	48	19	0	logfile
✔	8SHT	40494	2025-01-22	2023-04-14	3.0	3.48	3.06	3.3	0.004	0.53	0.0	0.04	14.55	0.00	1.962	7.19	0.01	3.3	96.7	0.0	1.54	0.84	0.88	2.68	3.3	0.002	0.57	0.0	0.04	15.63	0.00	1.947	6.35	0.61	3.5	96.5	0.0	1.66	0.28	0.80	0.86	2.34	68272	8859	50	0	48	19	0	logfile
✘	8J1Q	35930	2025-01-14	2023-04-13	3.3	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5447	427	6	90	1	0	0	logfile
✔	8SH9	40481	2025-01-21	2023-04-13	2.7	3.31	2.75	3.1	0.004	0.52	0.0	0.04	14.49	0.00	1.955	6.08	0.00	3.4	96.6	0.0	1.77	0.83	0.88	3.18	3.0	0.003	0.58	0.0	0.04	15.64	0.00	0.923	5.56	0.56	3.2	96.8	0.0	1.68	0.25	0.84	0.89	2.98	67197	8725	50	0	48	19	0	logfile
✔	8SHD	40484	2025-01-20	2023-04-13	2.9	3.43	2.96	3.2	0.004	0.54	0.0	0.04	13.80	0.00	1.928	6.69	0.00	3.3	96.7	0.0	1.61	0.84	0.88	3.07	3.2	0.003	0.58	0.0	0.04	15.41	0.00	0.957	6.11	0.64	3.2	96.8	0.0	1.70	0.29	0.84	0.89	2.72	66069	8588	49	0	48	19	0	logfile
✔	8SGT	40467	2025-01-14	2023-04-13	3.6	3.99	3.64	3.7	0.005	0.75	0.0	0.05	13.35	0.01	2.090	4.53	0.00	2.2	97.8	0.0	-1.14	0.57	0.67	1.72	3.7	0.003	0.61	0.0	0.04	15.55	0.00	2.231	9.21	2.22	3.4	96.6	0.0	0.85	1.48	0.58	0.74	1.32	7119	918	4	0	6	0	0	logfile
✔	8oRD	17120	2025-01-20	2023-04-13	3.9	4.04	3.89	4.1	0.005	0.92	0.0	0.05	17.82	0.01	2.109	19.32	0.58	2.3	97.7	0.0	-0.41	0.55	0.81	1.69	4.0	0.003	0.80	0.0	0.05	17.82	0.00	2.472	13.24	4.69	2.3	97.7	0.0	0.34	1.16	0.56	0.81	1.68	14590	1850	10	0	10	0	0	logfile
✔	8SHC	40483	2025-01-17	2023-04-13	3.0	3.12	2.90	3.2	0.005	0.70	0.0	0.17	21.90	0.01	2.197	6.87	0.19	5.9	94.1	0.0	1.04	0.67	0.78	2.59	3.2	0.003	0.59	0.0	0.04	16.57	0.00	2.370	4.66	1.72	5.3	94.7	0.0	1.62	0.40	0.67	0.81	2.57	10464	1226	4	0	40	0	0	logfile
✔	8SHA	40482	2025-01-21	2023-04-13	3.0	3.49	3.11	3.3	0.006	0.60	0.0	0.04	14.84	0.00	1.897	7.05	0.00	4.1	95.9	0.0	1.34	0.84	0.89	2.68	3.3	0.007	0.68	0.0	0.04	15.94	0.00	0.886	5.78	0.85	4.0	96.0	0.0	1.24	1.09	0.84	0.90	2.53	67155	8717	50	0	48	19	0	logfile
✔	8J1R	35931	2025-01-14	2023-04-13	3.52	3.54	3.52	3.4	0.004	0.57	0.0	0.04	12.84	0.00	2.200	14.16	6.09	4.7	95.2	0.1	0.26	0.79	0.74	1.50	3.4	0.003	0.61	0.0	0.04	14.98	0.00	2.509	11.37	3.87	3.7	96.3	0.0	0.29	1.15	0.79	0.74	0.60	6497	823	2	0	0	0	0	logfile
✔	8SH3	40479	2025-01-17	2023-04-13	2.8	3.07	2.82	3.1	0.004	0.65	0.0	0.17	21.60	0.01	2.186	10.80	0.00	4.8	95.2	0.0	1.02	0.59	0.79	4.25	3.1	0.005	0.68	0.0	0.05	15.86	0.01	2.373	9.32	2.39	5.1	94.7	0.2	0.85	0.37	0.62	0.83	4.04	10386	1226	4	0	38	0	0	logfile
✔	8SGR	40465	2025-01-18	2023-04-13	2.84	3.51	2.98	3.3	0.006	0.61	0.0	0.04	11.94	0.00	2.143	5.61	0.64	2.0	98.0	0.0	2.16	0.80	0.78	4.42	3.4	0.004	0.50	0.0	0.04	13.98	0.00	2.527	4.67	0.00	2.4	97.6	0.0	2.42	0.93	0.77	0.87	3.95	12252	1572	8	0	4	0	0	logfile
✔	8J1T	35932	2025-01-13	2023-04-13	3.3	2.34	2.94	2.2	0.004	0.58	0.0	0.04	11.73	0.00	2.220	8.62	0.00	7.2	92.8	0.0	-1.87	0.63	0.73	3.37	2.2	0.003	0.59	0.0	0.04	14.04	0.00	2.614	7.34	2.88	6.0	94.0	0.0	-1.73	0.37	0.65	0.77	2.79	3204	411	3	0	0	0	0	logfile
✘	8J1Z	35939	2025-01-25	2023-04-13	2.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	79520	2835	57	2632	210	664	0	logfile

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