Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8SGS	40466	2025-01-18	2023-04-13	3.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11720	1524	8	0	8	0	0	logfile
✔	8SHD	40484	2025-01-20	2023-04-13	2.9	3.43	2.96	3.2	0.004	0.54	0.0	0.04	13.80	0.00	1.928	6.69	0.00	3.3	96.7	0.0	1.61	0.84	0.88	3.07	3.2	0.003	0.58	0.0	0.04	15.41	0.00	0.957	6.11	0.64	3.2	96.8	0.0	1.70	0.29	0.84	0.89	2.72	66069	8588	49	0	48	19	0	logfile
✔	8J1R	35931	2025-01-14	2023-04-13	3.52	3.54	3.52	3.4	0.004	0.57	0.0	0.04	12.84	0.00	2.200	14.16	6.09	4.7	95.2	0.1	0.26	0.79	0.74	1.50	3.4	0.003	0.61	0.0	0.04	14.98	0.00	2.509	11.37	3.87	3.7	96.3	0.0	0.29	1.15	0.79	0.74	0.60	6497	823	2	0	0	0	0	logfile
✘	8J1Z	35939	2025-01-25	2023-04-13	2.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	79520	2835	57	2632	210	664	0	logfile
✔	8oRD	17120	2025-01-20	2023-04-13	3.9	4.04	3.89	4.1	0.005	0.92	0.0	0.05	17.82	0.01	2.109	19.32	0.58	2.3	97.7	0.0	-0.41	0.55	0.81	1.69	4.0	0.003	0.80	0.0	0.05	17.82	0.00	2.472	13.24	4.69	2.3	97.7	0.0	0.34	1.16	0.56	0.81	1.68	14590	1850	10	0	10	0	0	logfile
✘	8J1Q	35930	2025-01-14	2023-04-13	3.3	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5447	427	6	90	1	0	0	logfile
✔	8SGZ	40474	2025-01-16	2023-04-13	3.2	2.69	3.12	3.1	0.004	0.79	0.0	0.05	13.30	0.00	2.154	15.29	1.21	7.4	92.6	0.1	-1.59	0.68	0.74	2.17	2.9	0.003	0.67	1.0	0.05	15.53	0.00	2.526	8.08	2.41	4.2	95.8	0.0	-0.87	1.35	0.72	0.82	2.15	53430	6876	18	0	6	0	0	logfile
✔	8oRE	17121	2025-01-13	2023-04-13	2.5	2.67	2.44	2.7	0.011	2.09	7.0	0.14	10.93	0.01	2.570	0.00	0.00	8.0	92.0	0.0	-2.10	0.32	0.74	5.29	2.7	0.003	0.66	0.0	0.05	17.34	0.00	2.527	1.66	2.49	6.7	93.3	0.0	-2.05	3.44	0.36	0.80	4.77	3615	231	3	0	0	0	1845	logfile
✔	8oRG	17123	2025-01-13	2023-04-13	2.3	2.70	2.18	2.6	0.010	1.26	0.0	0.08	11.92	0.01	2.462	0.00	0.00	2.4	97.6	0.0	-2.52	0.32	0.76	4.82	2.6	0.003	0.58	0.0	0.05	16.18	0.00	2.568	0.50	0.88	2.0	98.0	0.0	-2.93	1.12	0.37	0.82	4.32	3966	258	3	0	0	0	2025	logfile
✔	8SH2	40477	2025-01-22	2023-04-13	3.74	3.89	3.81	3.9	0.006	1.20	0.0	0.06	13.35	0.01	2.321	14.58	0.35	4.8	95.2	0.0	-2.82	0.58	0.42	0.91	3.9	0.005	0.87	0.0	0.05	15.61	0.00	2.288	23.02	2.64	6.3	93.7	0.0	-1.99	1.24	0.64	0.51	1.27	18038	2254	12	0	0	0	0	logfile
✔	8oR3	17116	2025-01-22	2023-04-13	2.9	2.33	2.91	2.1	0.005	0.72	2.0	0.05	16.27	0.01	2.008	7.11	0.95	2.9	97.1	0.0	1.22	0.77	0.75	1.19	2.0	0.005	0.94	1.0	0.04	17.26	0.01	1.868	6.65	2.51	3.2	96.8	0.0	0.96	0.45	0.78	0.79	2.02	18710	2343	7	0	3	0	0	logfile
✔	8SGT	40467	2025-01-14	2023-04-13	3.6	3.99	3.64	3.7	0.005	0.75	0.0	0.05	13.35	0.01	2.090	4.53	0.00	2.2	97.8	0.0	-1.14	0.57	0.67	1.72	3.7	0.003	0.61	0.0	0.04	15.55	0.00	2.231	9.21	2.22	3.4	96.6	0.0	0.85	1.48	0.58	0.74	1.32	7119	918	4	0	6	0	0	logfile
✔	8J1N	35928	2025-01-13	2023-04-13	2.51	2.65	2.47	2.7	0.009	1.01	0.0	0.05	15.98	0.00	2.219	8.99	0.00	2.9	97.1	0.0	1.72	0.60	0.79	3.77	2.7	0.003	0.57	0.0	0.04	17.28	0.00	2.495	6.86	2.07	2.0	98.0	0.0	3.16	0.49	0.64	0.88	3.50	3292	414	3	0	4	0	0	logfile
✔	8oRF	17122	2025-01-14	2023-04-13	2.5	2.71	2.32	2.7	0.010	1.27	0.0	0.07	11.76	0.01	2.508	0.00	0.00	5.1	94.9	0.0	-2.82	0.31	0.74	5.59	2.7	0.004	0.64	0.0	0.05	16.01	0.00	2.389	3.87	2.27	4.7	95.3	0.0	-3.54	1.16	0.38	0.83	5.47	4653	303	3	0	0	0	2382	logfile
✔	8SHC	40483	2025-01-17	2023-04-13	3.0	3.12	2.90	3.2	0.005	0.70	0.0	0.17	21.90	0.01	2.197	6.87	0.19	5.9	94.1	0.0	1.04	0.67	0.78	2.59	3.2	0.003	0.59	0.0	0.04	16.57	0.00	2.370	4.66	1.72	5.3	94.7	0.0	1.62	0.40	0.67	0.81	2.57	10464	1226	4	0	40	0	0	logfile
✘	8oR0	17114	2025-01-22	2023-04-12	3.1	2.37	2.99	1.7	0.004	0.64	1.0	0.04	15.61	0.00	1.149	6.33	0.51	3.9	96.1	0.0	0.59	0.64	0.56	0.20	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18823	2489	8	0	3	0	0	logfile
✔	8J19	35914	2025-01-15	2023-04-12	3.23	3.65	3.37	3.6	0.004	0.64	1.0	0.04	15.95	0.00	2.220	5.65	0.74	1.9	98.1	0.0	0.90	0.65	0.84	3.13	3.6	0.003	0.58	0.0	0.04	16.50	0.00	2.546	6.11	3.17	2.2	97.8	0.0	0.65	0.94	0.63	0.85	2.89	8801	1129	6	0	1	0	0	logfile
✔	8oR2	17115	2025-01-21	2023-04-12	3.2	2.36	3.12	3.0	0.007	0.76	13.0	0.06	14.65	0.00	1.805	7.23	1.24	3.3	96.7	0.0	1.99	0.72	0.66	0.70	2.0	0.004	0.69	0.0	0.04	16.80	0.00	2.019	6.15	2.90	3.1	96.9	0.0	0.92	1.24	0.78	0.76	1.73	16558	2072	5	0	3	0	0	logfile
✔	8SGJ	40457	2025-01-15	2023-04-12	3.1	3.60	3.20	3.5	0.004	0.70	0.0	0.05	12.73	0.01	1.994	5.39	0.00	2.6	97.4	0.0	-0.02	0.64	0.84	3.47	3.5	0.003	0.55	0.0	0.04	14.83	0.00	2.214	4.53	2.30	2.3	97.6	0.1	1.20	0.97	0.55	0.81	2.90	7667	982	4	0	9	1	0	logfile
✔	8J18	35913	2025-01-15	2023-04-12	2.89	3.40	3.16	3.3	0.004	0.71	0.0	0.05	15.96	0.00	2.181	6.45	1.26	4.0	96.0	0.0	-0.18	0.56	0.78	3.08	3.3	0.003	0.66	0.0	0.04	16.55	0.00	2.481	8.20	2.41	3.5	96.4	0.1	0.41	0.91	0.56	0.79	2.91	8860	1137	6	0	1	0	0	logfile

• ← previous
• Page 171 of 588
• next →