Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8J1A	35915	2025-01-15	2023-04-12	3.24	3.58	3.34	3.6	0.004	0.62	0.0	0.04	15.32	0.00	1.976	5.61	0.63	3.8	96.2	0.0	0.36	0.61	0.82	2.87	3.6	0.002	0.56	0.0	0.04	16.08	0.00	2.536	4.93	1.89	3.0	97.0	0.0	0.35	0.39	0.56	0.81	2.66	8845	1137	5	0	0	0	0	logfile
✔	8J18	35913	2025-01-15	2023-04-12	2.89	3.40	3.16	3.3	0.004	0.71	0.0	0.05	15.96	0.00	2.181	6.45	1.26	4.0	96.0	0.0	-0.18	0.56	0.78	3.08	3.3	0.003	0.66	0.0	0.04	16.55	0.00	2.481	8.20	2.41	3.5	96.4	0.1	0.41	0.91	0.56	0.79	2.91	8860	1137	6	0	1	0	0	logfile
✔	8J19	35914	2025-01-15	2023-04-12	3.23	3.65	3.37	3.6	0.004	0.64	1.0	0.04	15.95	0.00	2.220	5.65	0.74	1.9	98.1	0.0	0.90	0.65	0.84	3.13	3.6	0.003	0.58	0.0	0.04	16.50	0.00	2.546	6.11	3.17	2.2	97.8	0.0	0.65	0.94	0.63	0.85	2.89	8801	1129	6	0	1	0	0	logfile
✘	8oR0	17114	2025-01-22	2023-04-12	3.1	2.37	2.99	1.7	0.004	0.64	1.0	0.04	15.61	0.00	1.149	6.33	0.51	3.9	96.1	0.0	0.59	0.64	0.56	0.20	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18823	2489	8	0	3	0	0	logfile
✔	8oR2	17115	2025-01-21	2023-04-12	3.2	2.36	3.12	3.0	0.007	0.76	13.0	0.06	14.65	0.00	1.805	7.23	1.24	3.3	96.7	0.0	1.99	0.72	0.66	0.70	2.0	0.004	0.69	0.0	0.04	16.80	0.00	2.019	6.15	2.90	3.1	96.9	0.0	0.92	1.24	0.78	0.76	1.73	16558	2072	5	0	3	0	0	logfile
✔	8SGJ	40457	2025-01-15	2023-04-12	3.1	3.60	3.20	3.5	0.004	0.70	0.0	0.05	12.73	0.01	1.994	5.39	0.00	2.6	97.4	0.0	-0.02	0.64	0.84	3.47	3.5	0.003	0.55	0.0	0.04	14.83	0.00	2.214	4.53	2.30	2.3	97.6	0.1	1.20	0.97	0.55	0.81	2.90	7667	982	4	0	9	1	0	logfile
✔	8SGC	40454	2025-01-21	2023-04-12	2.9	3.49	2.93	3.2	0.004	0.51	0.0	0.04	14.02	0.00	1.975	7.01	0.00	3.2	96.8	0.0	1.91	0.85	0.87	2.55	3.2	0.003	0.58	0.0	0.04	15.46	0.00	1.354	6.09	0.71	3.2	96.8	0.0	1.79	2.38	0.84	0.88	2.36	66737	8668	50	0	48	19	0	logfile
✔	8SGQ	40464	2025-01-19	2023-04-12	3.7	4.22	3.84	3.6	0.003	0.64	0.0	0.04	14.79	0.00	2.031	16.53	0.00	5.3	94.6	0.0	0.13	0.80	0.73	0.49	3.7	0.003	0.70	0.0	0.04	16.35	0.00	2.295	14.59	1.37	5.3	94.7	0.0	-0.02	1.12	0.81	0.75	0.47	62187	8093	32	0	16	0	0	logfile
✔	8SG9	40453	2025-01-20	2023-04-12	2.9	3.49	2.92	3.2	0.004	0.53	0.0	0.04	13.77	0.00	1.928	6.71	0.00	3.1	96.9	0.0	1.67	0.85	0.88	2.78	3.2	0.003	0.60	0.0	0.04	15.13	0.00	1.899	5.75	0.68	3.1	96.9	0.0	1.64	2.13	0.85	0.89	2.60	65583	8522	49	0	48	19	0	logfile
✔	8SGL	40461	2025-01-21	2023-04-12	2.9	3.44	2.97	3.2	0.005	0.55	0.0	0.04	14.21	0.00	1.932	6.95	0.00	3.5	96.5	0.0	1.62	0.84	0.89	2.74	3.2	0.003	0.57	0.0	0.04	15.60	0.00	1.616	6.06	0.77	3.3	96.7	0.0	1.70	0.25	0.83	0.88	2.46	67432	8762	49	0	48	19	0	logfile
✔	8oQ7	17107	2025-01-20	2023-04-11	2.2	2.13	2.08	2.2	0.007	0.87	0.0	0.09	10.81	0.01	2.290	1.40	0.33	1.5	98.5	0.0	2.27	0.73	0.85	5.65	2.2	0.003	0.61	0.0	0.04	14.15	0.00	2.610	1.23	1.59	2.3	97.7	0.0	2.06	1.01	0.73	0.86	5.49	14702	1680	15	0	57	505	0	logfile
✔	8oQ5	17105	2025-01-14	2023-04-11	2.4	2.13	2.42	2.3	0.015	2.05	0.0	0.10	14.25	0.01	2.517	1.55	0.00	3.0	97.0	0.0	-5.16	0.77	0.77	4.67	2.3	0.004	0.82	0.0	0.04	18.86	0.00	2.433	10.65	1.37	1.6	98.4	0.0	-3.70	0.76	0.83	0.86	5.34	6528	816	12	0	0	0	0	logfile
✔	8SG8	40452	2025-01-21	2023-04-11	3.0	3.47	3.09	3.3	0.004	0.54	0.0	0.04	14.66	0.00	1.943	7.29	0.00	3.5	96.5	0.0	1.72	0.82	0.88	2.61	3.3	0.003	0.58	0.0	0.04	15.74	0.00	1.091	6.47	0.55	3.6	96.4	0.0	1.71	0.27	0.82	0.88	2.38	66839	8678	50	0	48	19	0	logfile
✔	8SFL	40444	2025-01-19	2023-04-11	3.3	4.44	3.39	3.8	0.005	1.00	0.0	0.06	21.89	0.01	2.236	5.08	0.69	3.4	96.6	0.0	-0.87	0.88	0.77	2.17	3.8	0.003	0.63	0.0	0.04	21.80	0.00	2.541	9.03	3.27	3.3	96.7	0.0	1.65	0.96	0.91	0.89	2.26	12971	1296	4	114	0	0	0	logfile
✔	8SFQ	40448	2025-01-18	2023-04-11	3.5	4.90	3.55	4.0	0.005	1.11	0.0	0.07	20.08	0.01	2.220	6.61	0.72	2.0	98.0	0.0	0.23	0.89	0.80	1.78	4.0	0.004	0.63	0.0	0.04	20.06	0.00	2.481	11.84	2.44	2.1	97.9	0.0	2.16	0.48	0.91	0.88	1.76	12045	1240	4	92	0	0	0	logfile
✔	8J0o	35907	2025-01-23	2023-04-11	3.32	4.35	3.46	7.0	0.014	0.97	0.0	0.04	18.12	0.01	1.915	13.09	0.40	8.4	91.4	0.3	-1.15	0.52	0.21	0.30	4.0	0.003	0.92	0.0	0.05	17.47	0.01	2.474	15.28	2.59	7.9	91.8	0.3	-0.79	1.74	0.69	0.58	0.10	20986	2627	13	0	9	0	0	logfile
✔	8SFF	40440	2025-01-21	2023-04-11	3.2	3.48	3.08	3.3	0.004	0.55	0.0	0.04	14.50	0.00	1.599	7.13	0.00	3.2	96.8	0.0	1.72	0.84	0.89	2.47	3.3	0.004	0.59	0.0	0.04	15.57	0.00	1.198	5.95	0.84	3.7	96.3	0.0	1.67	0.25	0.84	0.89	2.28	66750	8667	49	0	48	19	0	logfile
✔	8SFi	40442	2025-01-17	2023-04-11	3.5	4.57	3.64	3.8	0.005	1.08	0.0	0.06	19.82	0.01	2.218	5.89	0.46	2.6	97.4	0.0	-1.06	0.85	0.73	1.89	3.8	0.005	0.63	0.0	0.04	19.74	0.00	2.492	10.93	2.55	3.0	97.0	0.1	1.63	0.63	0.90	0.88	1.72	11477	1227	4	70	0	0	0	logfile
✔	8SFN	40445	2025-01-18	2023-04-11	3.3	4.62	3.48	3.8	0.005	1.22	0.0	0.07	21.53	0.01	2.188	6.39	0.26	2.5	97.5	0.0	-1.30	0.84	0.66	1.31	3.8	0.003	0.65	0.0	0.04	21.47	0.00	2.526	12.73	2.06	2.9	97.1	0.0	0.89	0.49	0.90	0.83	0.96	12807	1302	4	104	0	0	0	logfile
✔	8J0J	35904	2025-01-16	2023-04-11	2.7	2.79	2.72	2.7	0.005	0.70	0.0	0.06	16.09	0.00	2.238	9.99	1.25	1.6	98.4	0.0	-2.18	0.74	0.86	2.93	2.7	0.003	0.69	0.0	0.04	15.65	0.01	2.624	2.89	2.61	0.9	99.1	0.0	1.16	0.94	0.73	0.88	3.27	9138	1131	6	0	6	0	0	logfile

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