Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8SFi	40442	2025-01-17	2023-04-11	3.5	4.57	3.64	3.8	0.005	1.08	0.0	0.06	19.82	0.01	2.218	5.89	0.46	2.6	97.4	0.0	-1.06	0.85	0.73	1.89	3.8	0.005	0.63	0.0	0.04	19.74	0.00	2.492	10.93	2.55	3.0	97.0	0.1	1.63	0.63	0.90	0.88	1.72	11477	1227	4	70	0	0	0	logfile
✔	8SFR	40449	2025-01-18	2023-04-11	3.5	4.95	3.63	4.0	0.006	1.03	0.0	0.06	20.28	0.00	2.210	8.73	0.18	3.2	96.8	0.0	-0.36	0.91	0.88	1.56	4.0	0.004	0.68	0.0	0.04	20.34	0.00	2.498	11.49	2.62	3.6	96.4	0.0	1.15	0.35	0.91	0.88	1.54	12045	1240	4	92	0	0	0	logfile
✔	8oQ5	17105	2025-01-14	2023-04-11	2.4	2.13	2.42	2.3	0.015	2.05	0.0	0.10	14.25	0.01	2.517	1.55	0.00	3.0	97.0	0.0	-5.16	0.77	0.77	4.67	2.3	0.004	0.82	0.0	0.04	18.86	0.00	2.433	10.65	1.37	1.6	98.4	0.0	-3.70	0.76	0.83	0.86	5.34	6528	816	12	0	0	0	0	logfile
✔	8oQA	17110	2025-01-19	2023-04-11	2.9	2.48	2.90	2.9	0.003	0.59	0.0	0.06	10.52	0.00	2.070	3.88	0.61	0.9	99.1	0.0	2.11	0.68	0.85	4.55	2.8	0.004	0.88	1.0	0.05	15.51	0.00	2.429	3.29	3.10	1.3	98.7	0.0	1.53	1.72	0.66	0.86	4.13	13762	1650	10	0	36	0	0	logfile
✔	8SFJ	40443	2025-01-17	2023-04-11	3.6	4.77	3.67	4.0	0.005	1.19	0.0	0.07	22.09	0.01	2.182	7.41	0.22	2.3	97.7	0.0	-0.53	0.87	0.72	1.68	4.0	0.003	0.64	0.0	0.04	22.36	0.00	2.468	10.86	2.80	3.1	96.9	0.0	1.03	0.99	0.92	0.86	1.86	10207	1001	4	97	0	0	0	logfile
✔	8SFF	40440	2025-01-21	2023-04-11	3.2	3.48	3.08	3.3	0.004	0.55	0.0	0.04	14.50	0.00	1.599	7.13	0.00	3.2	96.8	0.0	1.72	0.84	0.89	2.47	3.3	0.004	0.59	0.0	0.04	15.57	0.00	1.198	5.95	0.84	3.7	96.3	0.0	1.67	0.25	0.84	0.89	2.28	66750	8667	49	0	48	19	0	logfile
✔	8SFN	40445	2025-01-18	2023-04-11	3.3	4.62	3.48	3.8	0.005	1.22	0.0	0.07	21.53	0.01	2.188	6.39	0.26	2.5	97.5	0.0	-1.30	0.84	0.66	1.31	3.8	0.003	0.65	0.0	0.04	21.47	0.00	2.526	12.73	2.06	2.9	97.1	0.0	0.89	0.49	0.90	0.83	0.96	12807	1302	4	104	0	0	0	logfile
✔	8oQ8	17108	2025-01-20	2023-04-11	2.9	2.64	2.80	2.8	0.014	0.97	0.0	0.08	11.03	0.01	2.175	2.36	0.84	2.3	97.7	0.0	1.82	0.64	0.87	4.88	2.8	0.003	0.54	0.0	0.04	15.01	0.00	2.488	1.98	2.26	2.3	97.7	0.0	2.00	0.82	0.64	0.87	4.05	14432	1680	15	0	46	132	0	logfile
✔	8SG8	40452	2025-01-21	2023-04-11	3.0	3.47	3.09	3.3	0.004	0.54	0.0	0.04	14.66	0.00	1.943	7.29	0.00	3.5	96.5	0.0	1.72	0.82	0.88	2.61	3.3	0.003	0.58	0.0	0.04	15.74	0.00	1.091	6.47	0.55	3.6	96.4	0.0	1.71	0.27	0.82	0.88	2.38	66839	8678	50	0	48	19	0	logfile
✔	8SFP	40447	2025-01-18	2023-04-11	3.8	5.18	3.86	4.2	0.005	1.19	0.0	0.06	20.76	0.01	2.256	7.46	0.54	2.8	97.2	0.0	-0.93	0.89	0.78	1.19	4.2	0.004	0.70	0.0	0.04	20.63	0.00	2.490	13.85	2.80	2.8	97.2	0.0	1.24	0.53	0.90	0.87	0.98	12062	1240	4	93	0	0	0	logfile
✔	8J0N	35906	2025-01-22	2023-04-11	3.47	4.45	3.63	7.0	0.007	0.83	0.0	0.04	18.25	0.01	2.136	9.82	0.75	8.2	91.5	0.3	-1.04	0.53	0.23	0.17	4.1	0.003	0.90	0.0	0.04	17.97	0.01	2.364	14.78	2.60	7.9	91.7	0.4	-1.01	1.66	0.69	0.60	-0.23	18475	2301	12	0	9	0	0	logfile
✔	8SF0	40435	2025-01-23	2023-04-10	2.9	3.06	2.90	3.0	0.003	0.52	0.0	0.04	15.10	0.00	2.161	6.14	0.00	2.4	97.6	0.0	1.75	0.63	0.81	2.42	3.0	0.003	0.56	0.0	0.03	17.62	0.00	2.479	6.10	1.70	1.3	98.7	0.0	1.84	0.39	0.60	0.81	2.15	20664	2512	8	0	8	0	0	logfile
✔	8SEW	40431	2025-01-24	2023-04-10	2.89	2.97	2.87	3.0	0.004	0.59	0.0	0.04	12.56	0.00	0.267	5.77	2.14	2.1	97.7	0.2	1.93	0.60	0.79	2.44	3.0	0.003	0.72	0.0	0.04	16.48	0.00	2.312	4.57	2.50	1.8	98.1	0.1	2.04	0.58	0.60	0.81	2.22	20716	2516	8	0	8	0	0	logfile
✔	8SFE	40439	2025-01-18	2023-04-10	3.36	3.93	3.53	3.6	0.003	0.65	0.0	0.04	14.92	0.00	2.072	15.02	0.00	6.6	93.4	0.1	-0.39	0.80	0.80	0.82	3.6	0.003	0.71	0.0	0.04	16.29	0.00	2.158	11.87	1.33	5.3	94.6	0.1	-0.43	1.13	0.80	0.82	0.59	60512	7881	32	0	16	0	0	logfile
✔	8SEL	40421	2025-01-14	2023-04-10	3.8	4.20	3.61	4.2	0.026	2.25	0.0	0.13	12.89	0.01	2.474	1.85	0.00	4.3	92.8	2.9	-1.59	0.59	0.73	3.09	4.1	0.007	1.11	0.0	0.07	18.21	0.00	2.542	29.18	6.96	17.1	82.9	0.0	-3.56	2.55	0.53	0.71	2.10	5500	730	20	0	0	0	0	logfile
✔	8SEZ	40434	2025-01-23	2023-04-10	3.54	3.68	3.48	3.6	0.003	0.57	0.0	0.04	12.88	0.01	0.570	14.92	0.27	2.9	96.9	0.2	1.95	0.53	0.75	1.99	3.6	0.003	0.62	0.0	0.04	16.14	0.01	2.577	6.56	1.92	2.4	97.4	0.2	2.00	0.60	0.57	0.77	1.88	20580	2508	12	4	4	0	0	logfile
✔	8SEH	40411	2025-01-14	2023-04-10	2.9	2.68	2.71	3.1	0.026	2.09	10.0	0.12	10.93	0.01	2.507	0.00	0.00	7.0	93.0	0.0	-2.29	0.52	0.80	4.20	3.0	0.003	0.63	0.0	0.05	16.87	0.00	2.612	6.07	2.03	5.8	94.2	0.0	-2.98	1.28	0.44	0.81	2.61	5570	730	10	0	0	0	0	logfile
✔	8SEY	40433	2025-01-23	2023-04-10	2.99	3.15	3.05	3.1	0.002	0.46	0.0	0.04	13.63	0.00	2.224	4.52	0.00	2.5	97.5	0.0	1.73	0.64	0.84	2.70	3.1	0.004	0.58	0.0	0.04	16.56	0.00	2.346	4.01	2.28	2.4	97.6	0.0	2.13	0.39	0.65	0.88	2.44	20568	2504	8	0	8	0	0	logfile
✔	8SEU	40429	2025-01-23	2023-04-10	3.0	3.25	3.00	3.2	0.005	0.72	8.0	0.05	12.63	0.00	1.873	7.45	1.96	2.3	97.4	0.3	1.51	0.59	0.85	2.48	3.2	0.003	0.54	0.0	0.04	15.36	0.00	2.448	5.26	2.28	2.0	98.0	0.0	2.55	1.40	0.57	0.84	2.27	20576	2512	8	0	4	0	0	logfile
✔	8SEK	40419	2025-01-13	2023-04-10	3.5	3.55	3.07	3.8	0.032	2.39	0.0	0.14	10.43	0.01	2.397	1.27	0.00	20.0	80.0	0.0	-3.19	0.49	0.76	4.54	3.8	0.006	0.86	0.0	0.06	15.24	0.00	2.565	17.93	3.33	15.3	84.7	0.0	-4.53	1.27	0.40	0.74	1.67	2380	320	10	0	0	0	0	logfile

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