Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8SEV	40430	2025-01-23	2023-04-10	3.17	3.33	3.18	3.3	0.003	0.53	0.0	0.04	14.62	0.00	2.236	6.19	0.00	3.1	96.9	0.0	1.76	0.60	0.79	2.51	3.3	0.003	0.53	0.0	0.04	16.38	0.00	2.460	4.91	0.45	3.0	97.0	0.0	2.02	0.46	0.61	0.81	2.19	20632	2504	8	0	8	0	0	logfile
✔	8SEX	40432	2025-01-23	2023-04-10	2.84	2.99	2.84	3.0	0.005	0.56	0.0	0.04	12.78	0.01	0.419	6.47	2.15	2.8	97.1	0.2	1.60	0.63	0.81	2.20	3.0	0.003	0.53	0.0	0.04	16.08	0.00	2.519	4.52	3.45	1.8	98.0	0.2	2.37	0.54	0.64	0.83	2.17	20568	2504	8	0	8	0	0	logfile
✔	8SF0	40435	2025-01-23	2023-04-10	2.9	3.06	2.90	3.0	0.003	0.52	0.0	0.04	15.10	0.00	2.161	6.14	0.00	2.4	97.6	0.0	1.75	0.63	0.81	2.42	3.0	0.003	0.56	0.0	0.03	17.62	0.00	2.479	6.10	1.70	1.3	98.7	0.0	1.84	0.39	0.60	0.81	2.15	20664	2512	8	0	8	0	0	logfile
✔	8iZZ	35878	2025-01-13	2023-04-09	3.75	3.60	3.46	3.7	0.017	3.95	17.0	0.34	16.30	0.00	1.847	34.96	0.00	15.2	84.8	0.0	-5.84	0.28	0.51	1.98	3.7	0.023	3.51	1.0	0.14	27.18	0.01	2.258	39.79	22.73	50.0	47.0	3.0	-6.99	3.53	0.29	0.49	-0.29	1342	198	22	0	0	0	0	logfile
✔	8iZY	35877	2025-01-21	2023-04-09	2.5	2.54	2.78	2.6	0.006	0.65	0.0	0.03	18.00	0.00	1.956	7.21	0.71	3.2	96.8	0.0	2.64	0.48	0.78	2.29	2.6	0.003	0.52	0.0	0.03	17.94	0.00	2.423	5.01	1.42	3.1	96.9	0.0	2.74	1.49	0.51	0.80	2.14	16776	1004	8	0	8	0	8360	logfile
✔	8oPT	17087	2025-01-20	2023-04-08	3.65	2.57	3.54	3.6	0.002	0.48	0.0	0.04	19.51	0.00	1.982	7.07	0.14	2.4	97.6	0.0	1.92	0.69	0.60	0.79	2.2	0.003	0.54	0.0	0.04	19.69	0.00	2.224	7.47	1.36	3.7	96.3	0.0	1.13	0.32	0.70	0.61	0.92	14971	825	5	54	2	0	7197	logfile
✔	8SEB	40409	2025-01-16	2023-04-08	3.24	3.49	3.29	3.4	0.005	0.58	0.0	0.04	12.08	0.00	2.213	7.32	1.74	4.4	95.5	0.1	0.67	0.65	0.72	1.85	3.4	0.003	0.64	0.0	0.04	14.64	0.00	1.041	7.84	2.22	3.9	96.0	0.2	0.47	0.56	0.72	0.80	1.98	9609	1223	4	0	1	0	0	logfile
✔	8oPS	17086	2025-01-16	2023-04-08	3.82	3.04	3.82	2.8	0.003	0.57	0.0	0.04	21.45	0.01	1.982	6.28	0.78	0.7	99.3	0.0	1.99	0.64	0.50	0.99	1.9	0.003	0.58	0.0	0.04	21.65	0.01	2.402	11.58	0.78	4.1	95.9	0.0	0.80	0.90	0.69	0.60	0.77	9241	445	4	69	1	0	4258	logfile
✔	8SE9	40407	2025-01-17	2023-04-08	3.2	3.47	3.24	3.5	0.005	0.58	0.0	0.04	11.99	0.00	2.204	6.60	2.00	3.4	96.4	0.2	0.48	0.74	0.84	2.43	3.5	0.003	0.62	0.0	0.04	14.84	0.00	2.357	6.50	1.82	3.3	96.6	0.1	0.47	0.89	0.77	0.86	2.42	10195	1297	5	0	1	0	0	logfile
✔	8SEA	40408	2025-01-17	2023-04-08	3.4	3.67	3.45	3.7	0.005	0.57	0.0	0.04	11.77	0.00	1.270	8.65	3.00	4.0	96.0	0.0	0.54	0.71	0.76	1.96	3.6	0.004	0.63	0.0	0.04	14.55	0.00	2.580	8.65	3.00	4.8	95.2	0.0	0.57	0.39	0.76	0.85	1.59	10208	1299	5	0	1	0	0	logfile
✔	8oPL	17072	2025-01-15	2023-04-07	2.41	2.59	2.48	2.6	0.004	0.57	0.0	0.04	18.29	0.00	2.317	4.21	0.71	0.5	99.5	0.0	0.52	0.51	0.86	3.43	2.6	0.004	0.54	0.0	0.04	18.56	0.00	2.599	2.47	2.54	1.0	99.0	0.0	0.98	0.22	0.50	0.86	3.47	50679	6048	54	135	0	0	0	logfile
✔	8oPG	17052	2025-01-24	2023-04-07	3.2	3.49	3.28	3.4	0.004	0.64	0.0	0.04	16.70	0.01	2.329	7.49	0.78	4.2	95.8	0.0	-2.73	0.53	0.83	2.68	3.4	0.003	0.66	0.0	0.04	17.18	0.00	2.468	7.83	2.10	6.0	94.0	0.0	-0.44	0.48	0.54	0.83	2.55	22059	2755	19	0	0	0	0	logfile
✔	8oPH	17053	2025-01-24	2023-04-07	2.93	2.28	2.96	2.0	0.004	0.67	0.0	0.04	15.93	0.01	2.221	6.64	0.60	5.1	94.9	0.0	-1.59	0.77	0.78	3.10	2.0	0.003	0.63	0.0	0.04	16.96	0.01	2.580	5.86	1.53	4.7	95.3	0.0	0.32	0.46	0.76	0.77	2.40	21824	2704	16	0	0	0	0	logfile
✔	8SDZ	40355	2025-01-13	2023-04-07	2.86	3.25	2.87	3.2	0.003	0.59	0.0	0.04	16.55	0.00	2.135	4.33	1.43	0.8	99.2	0.0	0.91	0.56	0.82	2.83	3.2	0.003	0.57	0.0	0.04	16.58	0.00	2.616	3.69	3.33	1.2	98.8	0.0	1.97	0.43	0.58	0.83	2.72	3913	500	2	0	1	22	0	logfile
✔	8iZP	35867	2025-01-16	2023-04-07	3.31	3.72	3.43	3.7	0.015	2.04	19.0	0.13	17.71	0.01	2.316	9.67	15.23	3.7	96.2	0.2	-1.61	0.67	0.82	1.87	3.7	0.003	0.67	0.0	0.04	16.72	0.00	2.501	5.68	4.10	2.2	97.8	0.0	0.92	1.65	0.62	0.82	1.62	9425	1210	1	0	0	0	0	logfile
✔	8oPF	17051	2025-01-24	2023-04-07	2.83	3.10	3.08	3.1	0.004	0.59	0.0	0.04	17.43	0.01	2.443	7.89	0.53	2.1	97.9	0.0	-1.34	0.53	0.84	3.17	3.1	0.004	0.62	0.0	0.04	18.44	0.01	2.398	8.18	3.56	4.0	96.0	0.0	0.24	0.49	0.53	0.85	3.15	22401	2793	19	0	0	0	0	logfile
✔	8oPC	17048	2025-01-16	2023-04-07	2.99	3.29	3.16	3.2	0.005	0.77	0.0	0.04	17.78	0.00	2.198	8.83	1.08	5.4	94.6	0.0	-0.67	0.49	0.87	3.04	3.2	0.004	0.59	0.0	0.04	18.13	0.00	2.533	6.06	2.31	4.0	96.0	0.0	0.22	1.42	0.47	0.86	2.76	53088	6328	56	140	0	0	0	logfile
✔	8iZF	35863	2025-01-15	2023-04-07	3.85	4.31	3.92	4.2	0.006	1.10	0.0	0.06	16.15	0.01	1.945	21.89	2.73	9.5	89.8	0.7	-1.59	0.63	0.78	0.99	4.2	0.004	0.80	0.0	0.04	17.32	0.01	2.413	10.84	4.71	8.4	91.6	0.0	-0.33	2.31	0.61	0.78	1.02	7594	894	6	0	2	0	0	logfile
✔	8iZM	35865	2025-01-19	2023-04-07	3.01	2.60	3.16	3.2	0.007	1.07	0.0	0.05	14.42	0.01	1.440	21.98	0.97	3.1	96.9	0.0	-0.71	0.74	0.73	1.71	2.1	0.003	0.73	0.0	0.04	16.93	0.00	2.365	11.52	2.23	1.8	98.2	0.0	1.01	1.00	0.78	0.81	2.10	12742	1608	6	0	2	0	0	logfile
✔	8oPQ	17085	2025-01-16	2023-04-07	3.28	2.33	3.33	2.2	0.003	0.52	0.0	0.04	9.91	0.01	2.245	8.25	0.00	3.8	96.2	0.0	1.64	0.77	0.77	3.11	2.2	0.003	0.62	0.0	0.04	15.06	0.00	2.526	7.17	3.18	3.7	96.3	0.0	2.10	0.52	0.77	0.79	2.88	10006	1296	4	0	2	0	0	logfile

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