Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HRJ	34975	2024-02-19	2022-12-15	3.1	3.46	3.33	3.4	0.003	0.61	0.0	0.05	14.23	0.01	2.203	5.91	0.26	4.9	94.8	0.3	-0.13	0.47	0.42	0.70	3.4	0.003	0.67	0.0	0.04	15.90	0.01	2.178	7.62	1.75	5.7	94.2	0.1	-0.57	1.74	0.66	0.78	1.53	24531	3126	3	0	0	0	0	logfile
✔	8HRK	34976	2024-02-13	2022-12-15	3.3	3.56	3.36	3.6	0.005	0.71	0.0	0.04	16.73	0.01	2.273	5.11	0.14	3.2	96.8	0.0	-1.80	0.67	0.74	1.69	3.6	0.002	0.55	0.0	0.04	17.43	0.00	2.213	4.55	1.73	3.0	97.0	0.0	-0.76	1.69	0.67	0.80	2.38	6412	791	2	0	0	0	0	logfile
✔	8HRA	34965	2024-02-25	2022-12-15	3.76	3.86	3.86	3.8	0.003	0.50	0.0	0.04	15.37	0.00	2.207	6.03	0.02	4.4	95.6	0.0	-0.18	0.77	0.85	1.80	3.8	0.003	0.51	0.0	0.04	16.70	0.00	2.128	7.20	1.35	4.3	95.6	0.1	0.62	1.13	0.76	0.85	1.38	48146	5885	14	51	4	0	0	logfile
✔	8BZY	16345	2024-02-13	2022-12-15	3.24	3.52	3.23	3.6	0.004	0.70	0.0	0.04	12.25	0.00	2.297	6.68	2.42	2.4	97.6	0.0	2.10	0.48	0.78	2.48	3.6	0.003	0.48	0.0	0.04	13.70	0.00	2.402	7.26	3.08	3.1	96.9	0.0	1.73	0.70	0.49	0.79	1.78	4311	549	3	0	2	0	0	logfile
✔	8HRM	34978	2024-02-13	2022-12-15	2.56	2.74	2.64	3.1	0.005	0.82	0.0	0.05	15.72	0.00	2.138	18.48	4.07	6.0	93.2	0.9	-1.82	0.70	0.79	4.89	3.1	0.004	0.82	0.0	0.05	15.90	0.01	2.109	11.20	4.65	4.5	95.5	0.0	-2.00	0.71	0.69	0.78	4.00	3567	476	8	0	0	19	0	logfile
✘	8HRN	34979	2024-02-13	2022-12-15	3.9	4.18	3.98	4.0	0.005	0.91	0.0	0.05	17.07	0.01	2.080	24.49	0.95	3.4	96.6	0.0	-1.15	0.76	0.69	0.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4870	597	1	0	0	0	0	logfile
✔	8HRG	34972	2024-02-14	2022-12-15	4.5	4.83	4.51	4.6	0.003	0.70	0.0	0.05	12.33	0.00	2.127	11.61	0.00	7.0	92.7	0.3	-0.76	0.85	0.83	—	4.6	0.003	0.59	0.0	0.04	12.40	0.00	2.181	12.33	0.00	7.0	92.7	0.3	-0.42	1.50	0.85	0.84	—	61173	7854	21	0	0	0	0	logfile
✔	8HQY	34954	2024-02-17	2022-12-14	3.05	3.63	2.80	2.2	0.011	1.01	0.0	0.06	27.35	0.01	2.238	4.33	0.14	5.8	94.2	0.0	-3.02	0.92	0.86	2.67	2.2	0.004	0.66	0.0	0.04	27.53	0.00	2.136	12.10	2.54	4.7	95.3	0.0	1.75	1.26	0.93	0.88	2.38	12302	848	12	272	0	0	0	logfile
✔	8HR1	34956	2024-02-15	2022-12-14	3.02	2.38	2.94	3.0	0.010	0.80	0.0	0.05	26.09	0.01	2.255	8.44	0.16	3.1	96.9	0.0	-5.09	0.84	0.81	2.82	2.9	0.004	0.59	0.0	0.03	28.13	0.00	2.131	10.13	3.44	2.8	97.2	0.0	1.84	1.25	0.89	0.89	1.90	12110	765	11	294	0	0	0	logfile
✔	8HR5	34958	2024-02-13	2022-12-14	3.73	4.01	3.70	4.0	0.004	0.67	0.0	0.05	22.93	0.00	2.191	12.34	3.37	5.6	94.4	0.0	0.07	0.69	0.72	2.02	4.0	0.003	0.61	0.0	0.04	22.88	0.00	2.161	7.90	5.29	4.4	95.6	0.0	1.56	1.29	0.70	0.73	1.10	7595	711	5	123	0	0	0	logfile
✔	8BYQ	16331	2024-02-20	2022-12-14	4.1	4.99	4.14	3.3	0.005	0.87	0.0	0.05	16.32	0.01	1.408	6.80	0.06	3.0	97.0	0.0	-0.60	0.83	0.67	—	3.2	0.003	0.59	0.0	0.04	17.48	0.00	1.743	13.84	0.00	2.8	97.2	0.0	0.97	1.60	0.85	0.72	—	85971	9841	52	396	18	0	0	logfile
✔	8BZ1	16335	2024-02-23	2022-12-14	3.8	4.17	3.77	3.3	0.004	0.74	1.0	0.05	18.10	0.01	1.674	4.35	0.00	1.8	98.2	0.0	0.10	0.78	0.64	1.06	3.4	0.004	0.61	0.0	0.04	20.09	0.00	1.842	12.47	0.91	3.8	96.2	0.0	0.57	1.33	0.80	0.69	1.07	103616	5667	35	396	10	0	50237	logfile
✔	8BYV	16334	2024-02-25	2022-12-14	2.89	3.45	3.02	2.9	0.003	0.57	0.0	0.04	22.87	0.00	2.158	15.00	0.88	4.2	95.8	0.0	-1.29	0.85	0.80	0.84	2.9	0.005	0.65	0.0	0.04	22.56	0.00	2.104	17.32	3.96	7.5	92.5	0.0	-0.97	1.07	0.85	0.84	1.16	51866	2391	21	1533	0	0	0	logfile
✔	8FHH	29085	2024-02-17	2022-12-14	3.09	3.34	3.16	3.3	0.006	0.83	0.0	0.05	12.51	0.01	2.292	4.45	0.19	1.8	98.2	0.0	-2.13	0.68	0.90	3.44	3.3	0.003	0.48	0.0	0.04	14.43	0.00	2.162	5.45	1.29	1.2	98.8	0.0	1.52	0.52	0.68	0.90	3.20	19824	2424	8	0	12	0	0	logfile
✔	8HQZ	34955	2024-02-15	2022-12-14	3.8	4.30	3.84	4.1	0.010	0.85	0.0	0.05	12.88	0.02	1.714	3.60	0.08	3.7	96.3	0.0	-1.21	0.84	0.82	2.57	4.1	0.003	0.58	0.0	0.04	13.77	0.00	2.172	4.97	0.93	2.0	98.0	0.0	0.05	0.52	0.86	0.85	2.10	66381	8490	39	0	0	0	0	logfile
✔	8FHK	29087	2024-02-18	2022-12-14	2.9	2.20	—	1.7	0.008	1.17	1.0	0.06	18.88	0.02	2.200	7.55	0.39	7.0	93.0	0.0	-1.60	0.73	0.68	1.79	1.7	0.003	0.61	0.0	0.04	17.81	0.00	1.856	11.42	1.64	7.2	92.7	0.1	-0.78	1.29	0.75	0.73	1.80	19947	1219	4	0	20	0	9827	logfile
✔	8HQC	34947	2024-02-14	2022-12-13	3.89	4.15	3.91	4.1	0.003	0.69	0.0	0.04	11.77	0.01	2.223	6.60	0.12	4.1	95.9	0.0	0.00	0.73	0.80	2.24	4.1	0.002	0.65	0.0	0.04	14.79	0.00	2.179	7.14	3.02	4.4	95.6	0.0	0.40	0.47	0.73	0.80	1.93	8538	1186	6	0	0	0	0	logfile
✔	8HPT	34943	2024-02-13	2022-12-13	3.39	3.64	3.38	3.7	0.003	0.60	0.0	0.04	14.89	0.01	2.212	6.51	0.40	3.4	96.6	0.0	0.29	0.72	0.81	2.10	3.7	0.004	0.61	0.0	0.04	15.89	0.00	2.186	6.12	2.68	4.5	95.5	0.0	0.27	0.38	0.73	0.83	2.25	7897	1094	6	0	1	0	0	logfile
✔	8BYS	16332	2024-02-13	2022-12-13	3.28	3.60	3.29	3.7	0.004	0.56	0.0	0.04	13.51	0.00	2.195	6.52	0.00	6.0	94.0	0.0	-0.91	0.70	0.83	3.36	3.7	0.005	0.59	0.0	0.05	15.26	0.00	2.193	6.25	3.15	7.0	93.0	0.0	-1.09	0.30	0.64	0.82	2.51	7406	968	3	0	0	0	0	logfile
✔	8HQ7	34946	2024-02-15	2022-12-13	2.7	2.88	2.96	2.8	0.003	0.72	0.0	0.05	12.54	0.01	2.131	5.95	0.00	4.8	95.2	0.0	0.23	0.77	0.85	4.00	2.8	0.003	0.65	0.0	0.05	14.94	0.01	2.135	6.62	1.50	4.8	95.2	0.0	0.31	0.34	0.77	0.87	3.31	8292	1082	6	0	2	0	0	logfile

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