Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8C07	16356	2024-02-13	2022-12-16	3.3	2.75	3.20	2.2	0.004	0.94	0.0	0.05	16.63	0.01	2.288	4.36	0.38	8.1	91.9	0.0	-3.00	0.77	0.72	1.96	3.2	0.003	0.63	0.0	0.04	17.14	0.00	2.275	8.83	3.02	8.3	91.7	0.0	-1.13	0.38	0.78	0.74	1.61	4974	644	5	0	1	0	0	logfile
✔	8HRY	34982	2024-02-13	2022-12-16	3.11	3.51	3.06	3.4	0.003	0.66	0.0	0.04	15.76	0.01	2.228	9.30	0.74	4.9	95.1	0.0	0.28	0.54	0.84	2.28	3.4	0.003	0.66	0.0	0.04	16.27	0.00	2.209	9.21	4.59	5.2	94.8	0.0	0.37	0.23	0.54	0.84	2.30	6016	782	4	0	0	0	0	logfile
✔	8HRX	34981	2024-02-13	2022-12-16	2.89	3.36	2.88	3.4	0.003	0.70	0.0	0.05	16.54	0.00	1.709	10.40	3.52	6.6	93.1	0.3	0.01	0.59	0.86	3.16	3.4	0.003	0.66	0.0	0.04	16.95	0.00	2.186	9.32	3.67	7.3	92.7	0.0	-0.05	0.89	0.58	0.85	2.73	6013	780	4	0	0	0	0	logfile
✔	8HRU	34980	2024-02-13	2022-12-16	3.9	4.26	4.10	4.1	0.006	0.98	0.0	0.05	17.40	0.01	2.000	22.29	0.38	3.9	96.1	0.0	-1.28	0.75	0.69	0.45	4.1	0.003	0.76	0.0	0.05	18.02	0.00	2.081	20.18	2.47	4.9	95.1	0.0	-0.13	0.64	0.75	0.70	0.49	4870	597	1	0	0	0	0	logfile
✔	8HS2	34983	2024-02-13	2022-12-16	3.08	3.85	3.16	3.6	0.004	0.78	0.0	0.05	14.96	0.01	2.192	7.16	0.17	4.7	95.3	0.0	0.10	0.67	0.87	3.05	3.6	0.003	0.63	0.0	0.04	15.23	0.00	2.219	12.38	1.65	4.8	95.2	0.0	0.85	0.89	0.68	0.87	2.74	5456	716	3	0	0	0	0	logfile
✔	8C00	16347	2024-02-15	2022-12-15	2.9	3.49	—	2.8	0.007	0.82	0.0	0.06	20.24	0.01	2.091	3.29	0.84	3.4	96.3	0.3	-0.72	0.88	0.89	3.72	2.8	0.003	0.64	0.0	0.04	20.28	0.00	2.129	6.08	1.28	3.1	96.8	0.1	0.51	1.09	0.88	0.90	2.86	63117	4186	26	1425	0	0	0	logfile
✔	8C03	16354	2024-02-13	2022-12-15	3.89	4.09	3.71	4.1	0.007	0.86	0.0	0.04	12.87	0.00	1.232	8.74	3.06	2.8	97.2	0.0	2.75	0.56	0.76	1.69	4.1	0.003	0.67	0.0	0.04	16.22	0.00	2.173	14.66	3.06	1.9	98.1	0.0	2.48	1.49	0.56	0.78	1.07	3330	429	1	0	1	0	0	logfile
✔	8C01	16349	2024-02-18	2022-12-15	2.7	3.36	—	2.7	0.009	0.86	0.0	0.06	20.55	0.01	2.038	3.08	0.79	3.5	96.2	0.3	-0.87	0.89	0.91	4.37	2.7	0.006	0.68	0.0	0.04	20.51	0.00	1.900	4.62	1.77	3.9	95.9	0.1	0.53	1.07	0.90	0.91	3.28	72685	5115	32	1545	1	0	0	logfile
✘	8C02	16353	2024-02-13	2022-12-15	4.09	4.26	4.03	4.2	0.004	0.83	0.0	0.04	13.16	0.01	2.225	19.86	0.44	4.1	95.9	0.0	1.51	0.58	0.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4242	549	2	0	0	0	0	logfile
✔	8HR7	34962	2024-02-16	2022-12-15	3.96	4.06	4.11	3.9	0.002	0.52	0.0	0.04	14.32	0.00	1.995	11.90	0.07	3.6	96.4	0.0	-0.25	0.74	0.76	1.48	3.9	0.005	0.64	0.0	0.04	16.20	0.00	2.079	15.57	1.29	5.5	94.5	0.0	0.25	1.11	0.74	0.77	1.28	121662	15154	19	0	0	0	0	logfile
✔	8HRC	34967	2024-02-18	2022-12-15	2.58	2.69	2.60	2.6	0.002	0.48	0.0	0.04	13.75	0.00	2.237	8.80	0.01	1.9	98.1	0.0	1.74	0.79	0.84	2.77	2.6	0.003	0.56	0.0	0.04	16.08	0.00	2.117	9.99	1.68	2.9	97.1	0.0	1.65	1.19	0.81	0.88	3.01	74964	9312	12	0	0	0	0	logfile
✔	8HRB	34966	2024-02-21	2022-12-15	3.78	3.89	3.82	3.8	0.002	0.48	0.0	0.04	15.52	0.00	2.187	8.99	0.02	4.4	95.6	0.0	-0.91	0.78	0.79	1.45	3.8	0.002	0.52	0.0	0.04	16.79	0.00	2.125	9.71	1.52	3.9	96.1	0.0	0.25	0.39	0.78	0.79	1.09	96352	11778	28	102	8	0	0	logfile
✔	8HR9	34964	2024-02-21	2022-12-15	3.03	3.12	3.15	3.0	0.002	0.47	0.0	0.04	15.46	0.00	1.989	10.51	0.05	3.3	96.7	0.0	-0.66	0.74	0.78	1.85	3.1	0.002	0.51	0.0	0.04	16.93	0.00	2.090	12.03	1.71	3.2	96.8	0.0	0.15	1.10	0.75	0.81	1.54	93394	11678	24	0	10	0	0	logfile
✔	8BZo	16344	2024-02-13	2022-12-15	3.5	3.72	3.51	3.7	0.005	0.73	1.0	0.05	16.41	0.01	2.231	13.28	0.99	5.6	94.2	0.2	-1.51	0.64	0.75	1.73	3.7	0.003	0.59	0.0	0.04	16.98	0.00	2.254	9.10	3.97	4.1	95.9	0.0	-0.86	0.32	0.63	0.75	1.27	4834	614	3	0	0	0	0	logfile
✔	8HR8	34963	2024-02-24	2022-12-15	3.3	3.38	3.32	3.3	0.002	0.46	1.0	0.04	15.29	0.00	2.116	9.71	0.02	3.0	97.0	0.0	-0.57	0.73	0.82	2.48	3.3	0.003	0.51	0.0	0.04	16.75	0.00	2.108	10.61	1.49	3.1	96.9	0.0	0.55	1.51	0.75	0.84	2.03	46688	5839	12	0	5	0	0	logfile
✔	8FHT	29103	2024-02-13	2022-12-15	3.02	3.34	3.05	3.2	0.004	0.63	3.0	0.05	12.98	0.00	2.220	6.63	0.96	1.8	98.2	0.0	2.06	0.60	0.80	2.43	3.3	0.004	0.53	0.0	0.04	14.32	0.00	2.167	6.49	1.79	2.4	97.6	0.0	2.23	0.39	0.57	0.80	2.11	7006	936	4	0	4	0	0	logfile
✔	8BYP	16330	2024-02-17	2022-12-15	3.12	3.39	3.21	3.3	0.004	0.64	0.0	0.05	14.53	0.00	2.198	9.76	0.40	6.2	93.8	0.0	-1.08	0.68	0.79	3.25	3.3	0.002	0.54	0.0	0.04	16.17	0.00	2.187	10.59	2.31	5.3	94.7	0.0	-0.43	1.10	0.70	0.82	2.89	19836	2421	2	0	0	0	0	logfile
✔	8FHW	29172	2024-02-20	2022-12-15	3.2	3.30	3.00	3.2	0.006	0.64	0.0	0.05	14.68	0.00	2.161	4.14	0.00	3.8	95.7	0.5	-0.11	0.79	0.82	4.11	3.2	0.003	0.49	0.0	0.04	15.60	0.00	2.165	3.92	1.22	3.6	96.4	0.0	0.93	0.33	0.82	0.85	3.71	26376	1728	12	4	4	0	12732	logfile
✘	8HRL	34977	2024-02-13	2022-12-15	2.8	3.03	2.84	3.1	0.004	0.73	0.0	0.05	18.12	0.01	2.124	7.19	1.59	4.7	95.3	0.0	-1.16	0.64	0.73	1.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6412	791	2	0	0	0	0	logfile
✔	8HRi	34974	2024-02-19	2022-12-15	2.9	3.08	2.94	3.1	0.003	0.61	0.0	0.05	14.23	0.01	2.203	5.76	0.26	4.9	94.8	0.3	-0.13	0.39	0.39	0.61	3.1	0.003	0.65	0.0	0.04	16.24	0.01	2.130	6.86	1.53	5.6	94.3	0.0	-0.71	1.06	0.59	0.77	1.67	24531	3126	3	0	0	0	0	logfile

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