Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8C1B	16377	2024-02-15	2022-12-20	3.8	4.32	3.79	3.9	0.007	1.31	2.0	0.07	16.55	0.01	2.045	3.20	0.28	4.2	95.5	0.2	-0.06	0.76	0.70	0.87	3.9	0.003	0.59	0.0	0.04	14.12	0.00	1.919	10.31	0.70	3.7	96.3	0.0	0.88	0.56	0.78	0.73	1.42	12675	807	7	0	16	0	6106	logfile
✔	8HSR	35004	2024-02-24	2022-12-20	4.0	4.38	—	3.1	0.005	0.80	0.0	0.05	15.15	0.01	1.243	24.75	0.02	6.7	93.1	0.2	-0.72	0.73	0.54	—	3.0	0.003	0.70	0.0	0.04	16.74	0.00	1.881	19.11	1.68	5.6	94.3	0.1	-0.33	0.52	0.88	0.81	—	42577	5143	21	95	21	0	0	logfile
✔	8BVW	16274	2024-02-20	2022-12-20	4.0	3.84	3.33	3.4	0.006	0.90	0.0	0.05	17.06	0.01	1.730	5.60	0.06	3.1	96.9	0.0	-0.71	0.71	0.56	—	3.4	0.004	0.61	0.0	0.04	18.66	0.00	1.973	11.02	1.10	2.7	97.3	0.0	0.82	0.61	0.71	0.57	—	84783	9510	54	412	46	0	0	logfile
✔	8C1C	16378	2024-02-17	2022-12-20	4.1	5.17	4.18	4.0	0.008	1.21	1.0	0.06	14.93	0.01	2.072	2.46	0.00	3.2	96.7	0.2	-0.23	0.87	0.71	—	4.0	0.004	0.65	0.0	0.04	12.69	0.00	1.867	14.14	0.00	6.2	93.8	0.0	-0.01	1.56	0.88	0.75	—	19267	1237	13	0	28	0	9284	logfile
✔	8HSJ	34999	2024-02-17	2022-12-19	3.6	4.38	3.44	3.4	0.004	0.80	0.0	0.05	14.73	0.01	1.788	16.52	4.93	3.7	96.0	0.3	-0.81	0.82	0.68	0.35	3.9	0.004	0.79	0.0	0.04	16.77	0.01	1.367	23.69	3.02	3.1	96.6	0.3	-0.48	1.67	0.85	0.73	0.51	17244	2166	12	0	18	0	0	logfile
✔	8HSG	34996	2024-02-19	2022-12-19	3.2	3.75	3.14	3.3	0.003	0.59	0.0	0.04	15.67	0.00	2.059	12.05	0.00	5.3	94.7	0.0	-0.30	0.85	0.83	1.70	3.4	0.003	0.59	0.0	0.04	17.03	0.00	2.044	11.83	1.77	5.7	94.3	0.0	0.01	1.12	0.86	0.85	1.83	24636	2923	9	76	2	0	0	logfile
✔	8FJB	29221	2024-02-13	2022-12-19	3.06	3.49	3.03	3.4	0.006	0.68	0.0	0.05	13.23	0.01	2.135	3.71	0.00	2.7	97.2	0.1	-1.47	0.70	0.89	5.11	3.4	0.003	0.55	0.0	0.04	14.82	0.00	2.239	3.63	1.01	2.8	97.2	0.0	1.03	0.91	0.73	0.91	4.34	6330	802	5	0	0	0	0	logfile
✔	8C0V	16372	2024-02-24	2022-12-19	4.1	3.82	4.15	3.8	0.003	0.75	0.0	0.05	14.63	0.01	1.947	6.37	0.06	7.3	92.7	0.0	-2.19	0.82	0.76	—	3.4	0.004	0.68	0.0	0.04	14.19	0.00	1.814	11.42	0.04	6.6	93.4	0.0	-0.75	1.00	0.83	0.78	—	43092	5555	13	0	31	0	0	logfile
✔	8HSH	34997	2024-02-18	2022-12-19	3.4	4.05	3.31	3.5	0.004	0.70	0.0	0.05	13.14	0.01	2.046	15.38	0.08	6.1	93.9	0.0	-0.86	0.86	0.79	1.42	3.5	0.003	0.62	0.0	0.04	15.18	0.00	2.012	13.77	1.61	5.5	94.5	0.0	-0.30	1.17	0.86	0.80	1.29	23072	2923	6	0	3	0	0	logfile
✔	8FJA	29220	2024-02-13	2022-12-19	3.0	3.44	2.98	3.3	0.007	0.82	0.0	0.05	12.62	0.01	2.220	6.93	0.00	5.8	94.2	0.0	-2.60	0.71	0.89	4.79	3.3	0.003	0.55	0.0	0.04	15.32	0.00	2.244	5.34	1.14	3.4	96.6	0.0	0.08	0.38	0.71	0.89	4.17	6419	812	5	0	0	0	0	logfile
✔	8HSi	34998	2024-02-13	2022-12-19	3.1	3.78	3.14	3.6	0.005	0.85	1.0	0.05	19.62	0.00	2.299	14.97	0.00	5.5	94.5	0.0	0.27	0.64	0.80	2.26	3.6	0.004	0.61	0.0	0.04	14.58	0.00	2.291	6.85	1.95	5.5	94.5	0.0	0.03	0.45	0.66	0.85	2.85	3516	405	5	0	10	0	0	logfile
✔	8C0W	16373	2024-02-24	2022-12-19	4.7	4.86	4.66	4.7	0.004	0.89	0.0	0.05	14.89	0.01	1.748	6.29	0.00	9.8	90.2	0.0	-2.63	0.86	0.75	—	4.7	0.003	0.75	0.0	0.04	14.55	0.00	1.882	14.80	0.00	8.5	91.5	0.0	-1.73	1.45	0.88	0.79	—	43092	5555	13	0	31	0	0	logfile
✘	8FJ5	29215	2024-02-17	2022-12-19	2.9	3.03	2.92	3.0	0.004	0.62	0.0	0.04	11.79	0.00	2.391	3.19	0.00	3.4	96.6	0.0	1.51	0.55	0.86	3.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18980	2660	20	0	0	0	0	logfile
✔	8HSC	34993	2024-02-14	2022-12-19	3.22	3.75	3.39	3.7	0.003	0.70	0.0	0.05	18.31	0.00	2.161	7.83	0.47	5.4	94.6	0.0	-1.27	0.63	0.82	1.68	3.7	0.003	0.59	0.0	0.04	18.41	0.00	2.077	11.32	5.32	5.9	94.1	0.0	-0.64	0.34	0.62	0.82	1.67	10180	1345	7	0	0	0	0	logfile
✔	8FiX	29212	2024-02-19	2022-12-17	3.9	4.15	3.95	3.9	0.003	0.69	0.0	0.05	14.47	0.00	1.933	14.02	0.07	12.8	87.1	0.2	-2.81	0.79	0.65	0.34	3.9	0.003	0.68	0.0	0.04	16.27	0.00	1.951	13.07	1.95	5.6	94.4	0.0	-0.67	1.57	0.81	0.70	0.37	25943	3185	9	49	3	0	0	logfile
✔	8HRX	34981	2024-02-13	2022-12-16	2.89	3.36	2.88	3.4	0.003	0.70	0.0	0.05	16.54	0.00	1.709	10.40	3.52	6.6	93.1	0.3	0.01	0.59	0.86	3.16	3.4	0.003	0.66	0.0	0.04	16.95	0.00	2.186	9.32	3.67	7.3	92.7	0.0	-0.05	0.89	0.58	0.85	2.73	6013	780	4	0	0	0	0	logfile
✔	8HS3	34984	2024-02-14	2022-12-16	3.14	3.64	3.25	3.6	0.005	0.75	0.0	0.05	16.98	0.01	2.141	7.14	0.36	5.6	94.4	0.0	-1.38	0.55	0.78	2.00	3.6	0.003	0.56	0.0	0.04	17.31	0.00	2.157	9.87	4.63	4.3	95.7	0.0	-0.20	0.29	0.54	0.77	1.99	8258	1124	5	0	0	0	0	logfile
✘	8C06	16355	2024-02-19	2022-12-16	2.7	2.32	2.57	2.7	0.003	0.76	0.0	0.05	13.59	0.01	2.333	2.28	0.00	5.5	94.5	0.0	-1.51	0.67	0.75	2.13	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25324	3298	8	0	6	0	0	logfile
✔	8C0E	16364	2024-02-17	2022-12-16	3.6	3.52	3.40	3.7	0.004	0.72	0.0	0.04	18.45	0.01	2.166	10.30	0.77	3.1	96.5	0.4	1.91	0.61	0.73	1.86	3.7	0.003	0.54	0.0	0.03	18.81	0.01	2.234	8.71	3.56	2.6	97.1	0.4	2.38	1.27	0.69	0.82	2.14	18385	2301	8	0	0	0	0	logfile
✔	8C0B	16357	2024-02-21	2022-12-16	3.98	2.77	4.01	2.1	0.003	0.79	0.0	0.05	12.77	0.01	2.172	3.80	0.51	3.9	95.9	0.2	-0.95	0.69	0.68	2.06	2.1	0.005	0.92	2.0	0.05	16.03	0.01	1.852	15.61	3.28	3.7	96.3	0.0	0.15	1.34	0.70	0.69	1.49	29816	3768	8	0	0	0	0	logfile

• ← previous
• Page 98 of 633
• next →