Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HPA	34929	2024-02-16	2022-12-12	3.01	3.41	3.24	3.4	0.002	0.55	0.0	0.04	15.99	0.00	2.144	9.19	0.00	9.3	90.0	0.7	-0.92	0.67	0.71	2.15	3.4	0.003	0.66	0.0	0.04	18.16	0.00	2.125	11.52	2.43	9.3	90.1	0.7	-1.04	1.41	0.66	0.76	2.35	14122	1648	5	33	0	0	0	logfile
✔	8HPF	34931	2024-02-15	2022-12-12	2.34	2.45	2.94	2.4	0.003	0.68	0.0	0.04	17.78	0.01	2.244	10.57	7.09	5.0	95.0	0.0	-0.06	0.71	0.75	2.92	2.4	0.003	0.66	0.0	0.04	17.38	0.01	2.137	11.43	3.54	5.6	94.4	0.0	-0.22	0.28	0.73	0.79	2.81	8268	1079	6	0	1	0	0	logfile
✔	8HP9	34928	2024-02-24	2022-12-12	2.75	2.94	2.83	2.8	0.009	0.80	0.0	0.05	13.47	0.01	2.089	12.97	0.00	7.1	92.8	0.1	-0.47	0.66	0.68	2.51	2.8	0.003	0.62	0.0	0.04	15.17	0.00	2.119	10.70	1.52	6.1	93.9	0.0	-0.16	0.35	0.70	0.75	2.05	45516	5837	18	0	32	0	0	logfile
✔	8BY8	16324	2024-02-14	2022-12-12	2.5	3.35	2.68	3.1	0.002	0.50	0.0	0.04	13.68	0.00	1.849	5.96	2.50	3.5	96.4	0.1	0.08	0.60	0.19	2.90	3.1	0.004	0.75	1.0	0.04	14.46	0.00	1.871	9.20	1.97	5.4	94.5	0.1	-0.19	0.54	0.76	0.74	3.01	38783	2568	2	0	0	0	19223	logfile
✔	8BY2	16319	2024-02-17	2022-12-11	3.18	3.61	3.24	3.6	0.003	0.54	0.0	0.03	19.61	0.00	2.211	4.78	0.00	5.0	95.0	0.0	1.83	0.62	0.83	0.69	3.6	0.002	0.53	0.0	0.03	18.80	0.00	2.199	6.21	2.30	5.1	94.9	0.0	1.16	0.26	0.59	0.82	0.67	17356	1094	4	0	8	0	8802	logfile
✔	8HoY	34927	2024-02-15	2022-12-11	2.76	2.99	2.88	3.1	0.002	0.46	0.0	0.04	13.25	0.00	2.189	9.49	0.00	7.4	92.6	0.1	-0.64	0.51	0.54	0.86	3.0	0.003	0.72	0.0	0.05	16.49	0.01	2.065	15.38	2.95	8.9	90.9	0.1	-1.73	0.80	0.54	0.60	0.92	13454	1650	3	0	0	0	0	logfile
✔	8FFZ	29071	2024-02-23	2022-12-11	3.8	3.60	3.85	3.5	0.013	1.89	17.0	0.10	18.55	0.02	2.526	0.36	0.38	5.5	94.4	0.1	-1.13	0.69	0.69	2.51	3.4	0.003	0.63	0.0	0.04	20.52	0.00	2.108	9.64	1.61	4.0	96.0	0.0	0.34	0.68	0.68	0.68	1.76	38962	4045	11	302	9	0	0	logfile
✔	8FFY	29070	2024-02-13	2022-12-11	3.6	3.59	3.60	3.8	0.008	0.72	0.0	0.05	19.05	0.00	2.125	4.09	0.00	0.3	99.7	0.0	-0.66	0.60	0.63	1.56	3.8	0.002	0.54	0.0	0.04	19.80	0.00	2.210	7.84	3.85	2.0	98.0	0.0	0.71	1.38	0.72	0.79	1.74	7442	770	5	61	2	0	0	logfile
✔	8FFV	29068	2024-02-21	2022-12-10	3.01	3.71	3.03	3.3	0.023	1.85	1.0	0.10	11.22	0.02	1.804	1.07	0.00	1.2	98.7	0.1	0.64	0.88	0.86	2.83	3.3	0.003	0.59	0.0	0.04	12.84	0.00	1.826	5.62	0.29	2.5	97.5	0.0	0.37	1.09	0.86	0.84	2.57	31631	1942	7	0	5	0	15804	logfile
✔	8FFW	29069	2024-02-21	2022-12-10	3.23	4.02	3.29	3.7	0.024	1.95	1.0	0.10	11.36	0.02	1.820	1.30	0.00	1.4	98.5	0.1	0.37	0.86	0.79	2.39	3.6	0.004	0.64	0.0	0.04	13.32	0.00	1.680	7.13	0.75	3.8	96.2	0.0	0.11	3.43	0.86	0.79	2.12	31497	1939	7	0	5	0	15742	logfile
✔	8Ho8	34922	2024-02-15	2022-12-09	2.24	2.63	2.22	2.6	0.003	0.59	0.0	0.05	17.23	0.00	2.278	2.79	1.30	3.3	96.7	0.0	0.44	0.73	0.89	5.92	2.6	0.003	0.59	0.0	0.05	17.28	0.00	2.232	2.83	2.10	3.4	96.6	0.0	0.57	0.14	0.77	0.90	5.66	13454	1618	6	0	4	309	0	logfile
✔	8Ho9	34923	2024-02-15	2022-12-09	2.25	2.64	2.25	2.6	0.009	0.69	2.0	0.06	17.35	0.00	1.947	2.88	1.23	3.6	96.4	0.0	0.41	0.68	0.86	5.45	2.6	0.004	0.59	0.0	0.05	17.44	0.00	2.164	3.23	1.45	3.6	96.4	0.0	0.56	0.19	0.75	0.90	5.51	13463	1622	4	0	0	347	0	logfile
✔	8FFL	29046	2024-02-17	2022-12-09	3.47	3.31	3.44	3.4	0.002	0.49	0.0	0.03	14.39	0.00	2.199	3.88	0.14	1.1	98.9	0.0	1.72	0.70	0.86	3.45	3.4	0.003	0.46	0.0	0.04	15.27	0.00	2.165	4.46	1.19	1.7	98.3	0.0	1.70	0.24	0.70	0.86	2.98	19683	2426	8	0	4	0	0	logfile
✔	8Ho7	34921	2024-02-15	2022-12-09	2.59	2.93	2.60	2.9	0.002	0.53	0.0	0.04	17.79	0.00	2.118	4.39	2.31	3.6	96.4	0.0	0.25	0.71	0.91	5.15	2.9	0.003	0.55	0.0	0.04	17.82	0.00	2.139	4.86	2.31	3.4	96.6	0.0	0.35	0.15	0.64	0.88	5.09	13227	1620	4	0	0	112	0	logfile
✔	8BXF	16317	2024-02-15	2022-12-08	3.4	3.97	3.47	3.9	0.005	0.96	0.0	0.06	13.51	0.01	2.365	5.27	0.38	4.3	95.7	0.0	-2.13	0.67	0.81	3.05	3.9	0.002	0.63	0.0	0.04	15.07	0.00	2.190	9.36	1.82	3.1	96.9	0.0	0.22	0.89	0.69	0.84	1.95	12692	1630	10	0	5	0	0	logfile
✔	8HNU	34918	2024-02-16	2022-12-08	2.28	2.97	2.29	2.7	0.003	0.45	0.0	0.04	16.20	0.00	2.170	3.11	1.52	2.0	97.9	0.1	1.07	0.85	0.90	4.54	2.7	0.005	0.71	2.0	0.05	16.18	0.00	1.964	3.56	0.58	2.4	97.5	0.1	0.93	0.12	0.85	0.91	4.77	16178	1970	6	0	4	316	0	logfile
✔	8HNN	34917	2024-02-13	2022-12-08	3.6	3.86	3.60	3.8	0.006	0.78	0.0	0.05	13.97	0.00	2.206	7.32	0.00	6.2	93.8	0.0	0.62	0.53	0.77	1.74	3.9	0.003	0.61	0.0	0.04	15.27	0.00	2.243	7.97	5.13	4.7	95.3	0.0	0.70	0.51	0.57	0.80	0.86	3063	392	3	0	2	0	0	logfile
✔	8BXG	16318	2024-02-17	2022-12-08	3.16	3.34	3.18	3.3	0.003	0.54	0.0	0.03	19.91	0.00	2.245	4.29	0.12	7.4	92.6	0.0	1.42	0.66	0.81	1.88	3.3	0.002	0.53	0.0	0.03	19.10	0.00	2.071	4.69	2.53	6.9	93.1	0.0	1.02	0.19	0.67	0.81	1.94	17301	1093	4	0	6	0	8796	logfile
✔	8FFi	29043	2024-02-22	2022-12-08	2.7	2.08	—	1.8	0.003	0.56	0.0	0.04	17.75	0.00	1.987	5.65	0.00	5.3	94.7	0.0	-0.88	0.84	0.81	3.04	1.8	0.003	0.59	0.0	0.04	19.40	0.00	1.988	6.14	2.08	5.9	94.0	0.0	-0.34	0.30	0.85	0.81	2.68	32540	3552	20	164	4	0	0	logfile
✔	8BXB	16314	2024-02-15	2022-12-08	3.9	4.23	3.84	4.2	0.004	0.78	0.0	0.05	13.50	0.01	2.256	7.26	5.55	3.9	96.1	0.1	-2.59	0.68	0.77	1.32	4.1	0.003	0.71	0.0	0.05	14.63	0.00	2.185	12.50	3.41	5.0	95.0	0.0	-0.98	0.89	0.67	0.80	1.48	12547	1630	14	0	5	4	0	logfile

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