Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HNM	34916	2024-02-14	2022-12-08	2.94	3.31	2.90	3.2	0.007	0.69	0.0	0.23	15.92	0.00	2.223	8.44	0.53	5.0	95.0	0.0	0.38	0.75	0.86	2.12	3.2	0.005	0.79	0.0	0.17	16.81	0.00	2.115	6.84	3.61	6.1	93.9	0.0	0.37	0.30	0.77	0.88	2.34	8784	1117	6	0	3	0	0	logfile
✔	8HNU	34918	2024-02-16	2022-12-08	2.28	2.97	2.29	2.7	0.003	0.45	0.0	0.04	16.20	0.00	2.170	3.11	1.52	2.0	97.9	0.1	1.07	0.85	0.90	4.54	2.7	0.005	0.71	2.0	0.05	16.18	0.00	1.964	3.56	0.58	2.4	97.5	0.1	0.93	0.12	0.85	0.91	4.77	16178	1970	6	0	4	316	0	logfile
✔	8BXB	16314	2024-02-15	2022-12-08	3.9	4.23	3.84	4.2	0.004	0.78	0.0	0.05	13.50	0.01	2.256	7.26	5.55	3.9	96.1	0.1	-2.59	0.68	0.77	1.32	4.1	0.003	0.71	0.0	0.05	14.63	0.00	2.185	12.50	3.41	5.0	95.0	0.0	-0.98	0.89	0.67	0.80	1.48	12547	1630	14	0	5	4	0	logfile
✔	8BX7	16311	2024-02-16	2022-12-08	2.76	3.44	2.81	3.3	0.003	0.66	0.0	0.04	15.28	0.00	2.209	10.59	1.92	5.3	94.6	0.0	0.66	0.72	0.77	2.03	3.3	0.003	0.61	0.0	0.04	15.95	0.00	2.192	9.28	3.26	5.2	94.8	0.0	1.48	0.28	0.70	0.76	1.88	15637	2059	5	0	0	0	0	logfile
✔	8HNK	34914	2024-02-14	2022-12-08	3.01	3.38	2.91	3.2	0.004	0.61	0.0	0.04	13.49	0.00	2.176	8.10	0.00	4.3	95.7	0.0	0.15	0.80	0.87	3.03	3.2	0.003	0.57	0.0	0.04	15.17	0.00	2.111	6.73	1.56	3.6	96.4	0.0	0.65	0.93	0.79	0.89	2.37	9492	1210	7	0	2	0	0	logfile
✔	8BXE	16316	2024-02-15	2022-12-08	3.9	4.10	3.90	4.1	0.003	0.72	0.0	0.05	12.69	0.00	2.220	12.46	0.00	4.6	95.4	0.0	-1.05	0.64	0.79	1.63	4.1	0.003	0.74	0.0	0.04	15.56	0.00	2.139	13.43	2.85	5.7	94.3	0.0	-0.64	0.46	0.64	0.80	1.07	12550	1630	14	0	5	4	0	logfile
✔	8FEZ	29035	2024-02-17	2022-12-07	3.72	2.90	3.94	3.1	0.018	1.77	1.0	0.10	9.25	0.01	1.688	7.96	0.22	4.6	95.4	0.0	-1.24	0.74	0.70	1.40	2.2	0.005	0.78	0.0	0.05	12.38	0.00	2.030	13.10	4.14	9.4	90.5	0.1	-2.15	1.25	0.77	0.73	1.25	17515	2843	3	0	0	0	0	logfile
✘	8BX5	16308	2024-02-15	2022-12-07	4.2	4.41	4.00	4.3	0.003	0.78	1.0	0.06	14.22	0.01	2.218	14.11	0.63	3.9	96.1	0.0	-0.69	0.60	0.73	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12527	1630	13	0	4	4	0	logfile
✔	8FF4	29039	2024-02-25	2022-12-07	3.6	3.84	—	3.5	0.003	0.64	0.0	0.04	19.46	0.00	1.983	15.63	0.71	5.8	93.6	0.6	0.08	0.87	0.80	1.80	3.5	0.005	0.69	1.0	0.04	19.48	0.00	1.829	14.56	2.96	6.0	93.6	0.4	0.17	1.14	0.89	0.84	1.85	50322	5652	30	200	14	0	0	logfile
✔	8BWR	16295	2024-02-14	2022-12-07	4.0	4.17	3.97	4.1	0.010	0.93	0.0	0.05	13.67	0.01	2.203	7.58	0.96	3.7	96.3	0.0	-1.63	0.65	0.78	—	4.1	0.005	0.71	0.0	0.04	16.14	0.00	2.196	14.49	4.03	3.1	96.9	0.0	0.67	2.65	0.71	0.81	—	9570	1195	2	0	1	0	0	logfile
✔	8BWQ	16294	2024-02-14	2022-12-07	3.9	4.13	3.88	4.0	0.009	0.89	0.0	0.05	13.09	0.01	2.238	4.90	0.00	3.0	97.0	0.0	-1.27	0.70	0.84	2.39	4.0	0.003	0.70	0.0	0.04	15.78	0.00	2.120	13.00	2.59	3.2	96.8	0.0	0.52	1.84	0.70	0.83	1.25	9576	1195	2	0	1	0	0	logfile
✔	8BWo	16292	2024-02-14	2022-12-07	3.2	3.36	3.15	3.4	0.005	1.11	0.0	0.05	13.92	0.01	1.900	2.44	0.47	4.2	95.8	0.0	-1.54	0.58	0.79	3.27	3.4	0.004	0.65	0.0	0.04	16.16	0.00	1.859	8.05	1.42	2.3	97.7	0.0	-0.25	1.79	0.69	0.86	2.68	9712	1211	2	0	4	0	0	logfile
✔	8BWP	16293	2024-02-14	2022-12-07	3.6	3.85	3.55	3.8	0.011	0.90	1.0	0.06	12.54	0.01	2.213	4.13	0.48	2.9	97.1	0.0	-1.51	0.68	0.83	2.86	3.8	0.005	0.93	2.0	0.05	15.38	0.00	2.115	10.99	3.07	1.6	98.3	0.1	0.42	1.11	0.69	0.79	1.72	9578	1195	2	0	1	0	0	logfile
✔	8HNB	34909	2024-02-13	2022-12-07	3.53	4.14	3.49	4.0	0.007	1.35	2.0	0.08	14.65	0.02	2.382	14.25	2.09	2.3	97.7	0.0	-0.66	0.58	0.74	1.11	4.1	0.004	0.76	0.0	0.04	14.28	0.00	2.117	10.47	3.13	2.5	97.5	0.0	1.44	1.62	0.47	0.70	1.30	4083	562	3	0	3	0	0	logfile
✔	8FF2	29036	2024-02-13	2022-12-07	2.87	2.65	2.28	3.2	0.005	0.43	0.0	0.04	10.64	0.00	2.540	4.96	0.00	0.0	100.0	0.0	-2.01	0.51	0.80	6.45	3.1	0.006	0.67	0.0	0.05	17.46	0.00	2.066	11.68	4.48	4.2	95.8	0.0	-2.65	2.67	0.53	0.82	6.07	5650	380	10	0	0	0	2740	logfile
✔	8HNC	34910	2024-02-13	2022-12-07	3.73	3.95	3.71	4.0	0.006	1.01	2.0	0.08	15.07	0.02	2.079	14.23	0.49	3.9	96.1	0.0	-2.79	0.58	0.82	2.00	3.9	0.003	0.64	0.0	0.04	14.83	0.00	2.142	9.32	2.68	2.8	97.2	0.0	0.70	1.00	0.54	0.82	1.68	4272	570	3	0	4	0	0	logfile
✔	8HN8	34908	2024-02-14	2022-12-07	3.0	3.50	3.16	3.5	0.003	0.59	0.0	0.04	13.37	0.00	2.225	4.83	0.41	3.1	96.9	0.0	0.55	0.57	0.78	3.07	3.5	0.002	0.48	0.0	0.04	15.59	0.00	2.240	4.66	2.39	3.6	96.4	0.0	0.86	0.33	0.56	0.78	2.71	8860	1120	6	0	1	0	0	logfile
✔	8BWS	16299	2024-02-24	2022-12-07	3.2	3.53	3.37	3.5	0.004	0.59	0.0	0.05	13.19	0.00	1.905	10.39	3.98	7.5	92.4	0.0	-0.57	0.75	0.82	2.60	3.5	0.003	0.60	0.0	0.04	15.35	0.00	1.990	11.80	3.50	6.9	93.1	0.0	-0.57	0.36	0.75	0.83	2.22	41013	5017	26	51	16	0	0	logfile
✔	8FF5	29040	2024-02-20	2022-12-07	3.13	3.79	3.26	3.4	0.003	0.66	0.0	0.04	19.54	0.00	1.886	16.53	0.95	7.2	92.2	0.7	-0.20	0.84	0.73	1.80	3.3	0.005	0.87	3.0	0.04	19.73	0.01	2.052	16.82	2.10	7.3	92.2	0.5	-0.03	1.28	0.88	0.83	2.19	27124	2957	15	136	0	0	0	logfile
✔	8FF3	29037	2024-02-13	2022-12-07	3.09	2.31	2.69	3.2	0.002	0.43	0.0	0.06	8.70	0.00	2.616	1.83	0.00	0.0	100.0	0.0	-2.15	0.40	0.67	4.94	3.2	0.004	0.49	0.0	0.05	11.72	0.00	2.004	5.95	0.93	1.4	98.6	0.0	-2.33	0.51	0.36	0.72	4.63	2190	150	6	0	0	0	1122	logfile

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