Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8F6X	28891	2024-02-19	2022-11-17	3.25	4.36	3.29	3.8	0.002	0.51	0.0	0.04	13.80	0.00	2.181	8.90	0.06	5.7	94.3	0.1	-0.91	0.84	0.73	2.65	3.8	0.002	0.56	0.0	0.04	14.64	0.00	2.149	11.77	1.03	5.8	94.1	0.1	0.02	0.95	0.92	0.88	2.65	14952	1980	9	0	3	0	0	logfile
✔	8F6Z	28893	2024-02-17	2022-11-17	2.7	3.51	2.66	3.1	0.007	0.80	0.0	0.05	15.71	0.00	1.907	8.80	0.00	3.0	97.0	0.0	0.31	0.82	0.87	4.21	3.2	0.003	0.52	0.0	0.04	14.11	0.00	2.166	7.36	0.97	2.1	97.9	0.0	1.10	1.14	0.77	0.85	3.68	16997	2015	19	0	37	5	0	logfile
✘	8F6P	28887	2024-02-17	2022-11-16	3.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17507	1091	4	0	34	0	8229	logfile
✔	8HHM	34804	2024-02-13	2022-11-16	3.08	3.57	3.10	3.3	0.005	0.53	0.0	0.04	20.70	0.00	2.106	6.39	3.34	2.9	97.1	0.0	1.27	0.81	0.82	2.37	3.3	0.005	0.63	0.0	0.04	21.29	0.00	2.035	10.06	2.63	2.9	97.1	0.0	1.92	1.80	0.82	0.83	2.18	5558	516	7	72	2	0	0	logfile
✔	8BPG	16152	2024-02-14	2022-11-16	3.1	3.80	3.06	3.3	0.010	1.11	0.0	0.08	12.89	0.01	2.391	3.14	0.00	6.6	93.4	0.0	-0.90	0.80	0.74	2.23	3.4	0.003	0.76	0.0	0.05	14.65	0.00	2.053	10.48	2.86	4.3	95.6	0.1	-0.39	1.48	0.88	0.85	2.35	8650	1106	10	0	6	0	0	logfile
✔	8HHL	34803	2024-02-13	2022-11-16	2.87	3.25	2.89	3.1	0.004	0.50	0.0	0.04	22.36	0.00	2.126	6.49	2.29	1.4	98.6	0.0	2.28	0.77	0.81	3.37	3.1	0.005	0.58	0.0	0.04	22.87	0.00	1.910	7.58	3.33	1.5	98.5	0.0	2.94	2.37	0.83	0.86	3.67	6971	592	6	111	4	0	0	logfile
✔	8HHo	34805	2024-02-13	2022-11-16	3.2	3.36	3.02	3.3	0.005	0.76	0.0	0.05	15.65	0.01	2.169	14.02	0.30	2.2	97.8	0.0	1.56	0.46	0.78	2.53	3.3	0.003	0.58	0.0	0.04	16.31	0.00	2.137	14.64	2.42	2.4	97.6	0.0	1.54	0.39	0.47	0.80	2.08	3274	416	1	0	1	0	0	logfile
✔	8BPF	16151	2024-02-17	2022-11-16	3.5	4.03	3.35	3.4	0.006	0.85	0.0	0.06	13.40	0.01	2.267	6.33	0.00	9.5	90.5	0.0	-1.72	0.86	0.77	2.18	3.5	0.003	0.67	0.0	0.04	15.26	0.00	2.183	11.23	2.65	7.7	92.2	0.1	-0.98	1.74	0.89	0.80	1.88	18593	2370	23	0	12	0	0	logfile
✔	8BPE	16150	2024-02-19	2022-11-16	3.63	3.94	3.36	3.4	0.009	1.07	0.0	0.08	13.16	0.01	2.283	5.43	0.00	8.6	91.4	0.0	-1.45	0.82	0.70	1.61	3.4	0.005	0.81	0.0	0.05	15.44	0.00	2.078	15.37	2.99	8.9	91.0	0.1	-1.33	1.07	0.89	0.81	1.82	24195	3104	30	0	14	0	0	logfile
✔	8HH2	34749	2024-02-19	2022-11-16	3.0	3.10	3.07	3.1	0.004	0.64	3.0	0.05	14.21	0.00	1.690	4.12	0.51	2.1	97.9	0.1	0.96	0.79	0.89	3.34	3.1	0.002	0.51	0.0	0.04	15.63	0.00	1.953	5.35	1.64	2.1	97.9	0.0	1.09	0.39	0.80	0.91	2.87	24281	3129	13	0	13	0	0	logfile
✔	8HHA	34757	2024-02-19	2022-11-16	3.4	3.24	3.42	3.4	0.003	0.60	0.0	0.04	14.06	0.00	1.970	6.08	0.00	3.0	96.9	0.0	0.84	0.78	0.87	3.10	3.4	0.003	0.54	0.0	0.04	15.39	0.00	1.875	6.78	1.40	3.8	96.2	0.0	0.60	0.29	0.79	0.88	2.69	24245	3129	12	0	11	0	0	logfile
✔	8HH5	34752	2024-02-19	2022-11-16	2.9	3.05	3.18	3.2	0.004	0.60	0.0	0.05	14.43	0.00	1.881	5.66	0.00	2.2	97.8	0.0	0.95	0.77	0.88	3.47	3.2	0.006	0.64	0.0	0.05	15.61	0.00	1.844	6.44	1.44	3.3	96.7	0.0	0.97	0.33	0.77	0.90	3.21	24277	3129	13	0	13	0	0	logfile
✔	8F6A	28878	2024-02-21	2022-11-16	2.06	3.05	2.14	2.7	0.004	0.69	0.0	0.05	17.55	0.01	2.320	4.08	3.21	3.1	96.9	0.0	1.20	0.80	0.76	4.28	2.7	0.005	0.63	0.0	0.04	16.28	0.00	1.429	2.59	0.99	4.1	95.9	0.0	1.45	0.85	0.81	0.91	4.64	93058	5950	28	0	0	0	47110	logfile
✘	8HH6	34753	2024-02-19	2022-11-16	2.9	3.16	3.03	3.1	0.003	0.58	0.0	0.04	13.71	0.00	2.002	5.07	0.00	2.3	97.7	0.0	1.53	0.80	0.89	3.28	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24277	3129	13	0	13	0	0	logfile
✔	8F66	28876	2024-02-24	2022-11-16	2.28	3.24	2.38	2.9	0.004	0.74	0.0	0.05	19.00	0.00	2.269	6.86	3.94	3.8	95.5	0.7	0.82	0.82	0.79	4.06	2.9	0.005	0.61	0.0	0.05	17.57	0.00	2.205	4.30	1.44	3.4	96.1	0.5	1.58	0.88	0.85	0.94	3.54	46508	6006	28	0	0	0	0	logfile
✔	8HH7	34754	2024-02-19	2022-11-16	2.5	3.02	2.62	2.8	0.004	0.59	0.0	0.05	13.52	0.00	1.560	3.12	0.04	1.9	98.1	0.0	1.55	0.85	0.92	4.56	2.8	0.003	0.50	0.0	0.04	14.58	0.00	1.955	3.37	0.70	2.2	97.8	0.0	1.55	0.91	0.84	0.93	3.94	24250	3129	13	0	12	0	0	logfile
✔	8HHC	34760	2024-02-19	2022-11-16	3.3	3.40	3.29	3.3	0.005	0.65	0.0	0.05	13.66	0.00	1.776	5.46	0.04	2.9	97.1	0.0	0.83	0.82	0.88	3.74	3.3	0.002	0.49	0.0	0.04	14.63	0.00	1.988	5.48	1.05	2.2	97.8	0.0	1.55	0.92	0.82	0.88	2.38	24249	3129	12	0	11	0	0	logfile
✔	8HH1	34748	2024-02-19	2022-11-16	2.9	3.08	2.86	3.0	0.004	0.66	4.0	0.05	14.40	0.00	1.081	4.29	1.01	1.7	98.3	0.0	1.35	0.81	0.90	3.97	3.0	0.005	0.56	0.0	0.05	16.04	0.00	1.865	4.92	1.79	2.5	97.5	0.0	0.96	0.43	0.82	0.93	3.76	24280	3129	13	0	12	0	0	logfile
✔	8HH8	34755	2024-02-19	2022-11-16	2.8	3.21	2.83	3.0	0.003	0.56	0.0	0.04	14.03	0.00	1.983	3.76	0.08	2.2	97.8	0.0	1.14	0.84	0.90	3.75	3.0	0.002	0.49	0.0	0.04	15.22	0.00	1.931	4.43	0.82	2.6	97.4	0.0	1.30	0.36	0.86	0.93	3.34	24250	3129	13	0	12	0	0	logfile
✔	8HH3	34750	2024-02-19	2022-11-16	4.3	3.10	3.07	3.1	0.004	0.64	3.0	0.05	14.21	0.00	1.690	4.12	0.51	2.1	97.9	0.1	0.96	0.73	0.80	—	3.1	0.007	0.67	0.0	0.05	14.57	0.01	1.869	6.22	0.04	3.1	96.8	0.1	0.52	0.37	0.75	0.81	—	24281	3129	13	0	13	0	0	logfile

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