Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8F6E	28881	2024-02-14	2022-11-16	3.8	4.02	3.70	4.0	0.003	0.55	0.0	0.04	13.52	0.00	2.060	5.75	0.00	5.4	94.2	0.4	-0.77	0.72	0.75	2.20	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10478	1366	8	0	8	0	0	logfile
✔	8F6J	28885	2024-02-14	2022-11-16	3.7	3.93	3.62	3.9	0.003	0.51	0.0	0.04	14.39	0.01	2.084	6.66	0.00	6.0	93.6	0.4	-0.50	0.73	0.81	1.81	3.9	0.003	0.62	0.0	0.04	16.26	0.00	2.045	9.87	2.27	6.8	92.8	0.4	-0.52	0.43	0.72	0.78	1.69	10472	1366	8	0	8	0	0	logfile
✔	8F6K	28886	2024-02-17	2022-11-16	3.46	3.70	3.47	3.7	0.002	0.50	0.0	0.03	14.25	0.00	1.909	10.84	0.00	6.0	93.5	0.5	-0.45	0.53	0.73	2.16	3.7	0.003	0.56	0.0	0.03	15.93	0.00	1.834	12.38	1.54	7.2	92.4	0.4	0.83	0.50	0.50	0.73	2.18	17298	1132	8	0	4	0	8586	logfile
✔	8BPE	16150	2024-02-19	2022-11-16	3.63	3.94	3.36	3.4	0.009	1.07	0.0	0.08	13.16	0.01	2.283	5.43	0.00	8.6	91.4	0.0	-1.45	0.82	0.70	1.61	3.4	0.005	0.81	0.0	0.05	15.44	0.00	2.078	15.37	2.99	8.9	91.0	0.1	-1.33	1.07	0.89	0.81	1.82	24195	3104	30	0	14	0	0	logfile
✔	8BPF	16151	2024-02-17	2022-11-16	3.5	4.03	3.35	3.4	0.006	0.85	0.0	0.06	13.40	0.01	2.267	6.33	0.00	9.5	90.5	0.0	-1.72	0.86	0.77	2.18	3.5	0.003	0.67	0.0	0.04	15.26	0.00	2.183	11.23	2.65	7.7	92.2	0.1	-0.98	1.74	0.89	0.80	1.88	18593	2370	23	0	12	0	0	logfile
✘	8F6P	28887	2024-02-17	2022-11-16	3.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17507	1091	4	0	34	0	8229	logfile
✔	8F6A	28878	2024-02-21	2022-11-16	2.06	3.05	2.14	2.7	0.004	0.69	0.0	0.05	17.55	0.01	2.320	4.08	3.21	3.1	96.9	0.0	1.20	0.80	0.76	4.28	2.7	0.005	0.63	0.0	0.04	16.28	0.00	1.429	2.59	0.99	4.1	95.9	0.0	1.45	0.85	0.81	0.91	4.64	93058	5950	28	0	0	0	47110	logfile
✔	8BPG	16152	2024-02-14	2022-11-16	3.1	3.80	3.06	3.3	0.010	1.11	0.0	0.08	12.89	0.01	2.391	3.14	0.00	6.6	93.4	0.0	-0.90	0.80	0.74	2.23	3.4	0.003	0.76	0.0	0.05	14.65	0.00	2.053	10.48	2.86	4.3	95.6	0.1	-0.39	1.48	0.88	0.85	2.35	8650	1106	10	0	6	0	0	logfile
✔	8HHL	34803	2024-02-13	2022-11-16	2.87	3.25	2.89	3.1	0.004	0.50	0.0	0.04	22.36	0.00	2.126	6.49	2.29	1.4	98.6	0.0	2.28	0.77	0.81	3.37	3.1	0.005	0.58	0.0	0.04	22.87	0.00	1.910	7.58	3.33	1.5	98.5	0.0	2.94	2.37	0.83	0.86	3.67	6971	592	6	111	4	0	0	logfile
✔	8HHo	34805	2024-02-13	2022-11-16	3.2	3.36	3.02	3.3	0.005	0.76	0.0	0.05	15.65	0.01	2.169	14.02	0.30	2.2	97.8	0.0	1.56	0.46	0.78	2.53	3.3	0.003	0.58	0.0	0.04	16.31	0.00	2.137	14.64	2.42	2.4	97.6	0.0	1.54	0.39	0.47	0.80	2.08	3274	416	1	0	1	0	0	logfile
✔	8HHM	34804	2024-02-13	2022-11-16	3.08	3.57	3.10	3.3	0.005	0.53	0.0	0.04	20.70	0.00	2.106	6.39	3.34	2.9	97.1	0.0	1.27	0.81	0.82	2.37	3.3	0.005	0.63	0.0	0.04	21.29	0.00	2.035	10.06	2.63	2.9	97.1	0.0	1.92	1.80	0.82	0.83	2.18	5558	516	7	72	2	0	0	logfile
✔	8HGL	34741	2024-02-22	2022-11-15	2.9	3.56	2.97	3.2	0.006	0.67	0.0	0.05	14.18	0.00	2.181	7.33	0.00	5.3	94.7	0.0	-0.39	0.81	0.77	2.77	3.2	0.003	0.60	0.0	0.04	14.62	0.00	2.164	8.23	1.40	4.4	95.6	0.0	0.00	0.56	0.85	0.85	2.70	34170	4317	24	0	60	0	0	logfile
✔	8HGM	34742	2024-02-13	2022-11-15	3.4	4.02	3.45	3.8	0.004	0.59	0.0	0.04	13.09	0.00	2.180	7.30	0.00	4.3	95.7	0.0	0.29	0.84	0.85	2.62	3.8	0.003	0.64	0.0	0.04	14.80	0.00	2.187	8.13	2.60	3.8	96.2	0.0	0.11	0.43	0.81	0.82	2.62	4886	632	4	0	2	0	0	logfile
✘	8BoB	16140	2024-02-15	2022-11-15	2.94	3.13	2.90	3.0	0.009	0.87	0.0	0.06	15.31	0.00	2.208	10.38	3.17	4.2	95.5	0.3	-1.98	0.85	0.84	3.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12712	1604	8	0	4	0	0	logfile
✔	8BoN	16144	2024-02-19	2022-11-15	3.2	3.14	3.12	3.1	0.004	0.57	0.0	0.04	13.29	0.00	2.145	5.32	0.00	3.0	97.0	0.0	0.15	0.76	0.79	2.78	3.1	0.003	0.53	0.0	0.04	13.74	0.00	2.202	6.08	1.00	3.5	96.5	0.0	0.17	0.25	0.76	0.78	2.43	25930	3246	22	0	52	0	0	logfile
✔	8F5Z	28869	2024-02-15	2022-11-15	3.2	2.36	—	2.1	0.003	0.59	0.0	0.04	17.24	0.01	2.234	9.25	0.47	2.5	97.5	0.0	0.05	0.75	0.77	1.85	2.1	0.003	0.62	0.0	0.04	17.69	0.00	2.222	11.04	5.30	2.7	97.3	0.0	0.22	0.33	0.75	0.76	1.77	13598	1724	4	0	2	0	0	logfile
✔	8HGP	34745	2024-02-14	2022-11-15	4.53	2.79	4.47	2.3	0.003	0.68	0.0	0.05	10.20	0.01	2.270	3.98	0.20	8.5	91.5	0.0	-3.92	0.66	0.64	—	2.0	0.003	0.74	0.0	0.05	11.10	0.00	2.181	13.95	0.10	10.0	90.0	0.0	-2.37	0.88	0.69	0.67	—	9169	1172	6	0	8	0	0	logfile
✔	8HGS	34746	2024-02-17	2022-11-15	3.81	2.51	3.80	3.8	0.004	0.75	0.0	0.06	13.68	0.01	2.368	3.29	0.00	8.1	91.9	0.0	-3.50	0.66	0.62	1.35	2.2	0.005	0.84	0.0	0.05	14.47	0.00	2.149	13.42	2.14	9.3	90.5	0.2	-1.67	1.45	0.71	0.70	2.07	10080	1280	8	0	12	0	0	logfile
✔	8HGo	34744	2024-02-14	2022-11-15	3.31	2.35	3.32	2.2	0.004	0.71	0.0	0.05	10.13	0.01	2.284	4.45	0.00	8.0	91.8	0.2	-3.74	0.71	0.68	2.06	2.0	0.004	0.76	0.0	0.05	13.77	0.00	2.165	13.25	2.15	8.2	91.8	0.0	-2.34	0.81	0.74	0.75	3.01	9227	1178	6	0	8	0	0	logfile
✔	8HG7	34737	2024-02-13	2022-11-14	3.1	2.83	3.04	3.0	0.017	2.20	2.0	0.09	14.42	0.01	2.121	6.92	2.19	4.6	95.4	0.0	-2.67	0.56	0.81	4.34	3.0	0.002	0.59	0.0	0.04	15.49	0.00	2.215	7.24	1.79	1.5	98.5	0.0	1.53	1.17	0.65	0.84	3.58	4808	619	3	0	3	2	0	logfile

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