Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8F2B	28812	2024-02-14	2022-11-07	2.0	1.79	2.02	1.9	0.004	0.55	0.0	0.04	14.23	0.00	2.278	5.13	1.32	1.0	99.0	0.0	-2.02	0.54	0.74	4.60	1.9	0.003	0.63	0.0	0.04	16.03	0.00	2.172	6.20	1.98	2.6	97.4	0.0	1.21	0.96	0.55	0.75	5.08	10360	1273	12	0	16	31	0	logfile
✔	8HDZ	34684	2024-02-15	2022-11-07	3.05	3.28	3.11	3.3	0.002	0.44	0.0	0.04	13.94	0.00	2.174	9.75	0.00	4.3	95.7	0.1	0.18	0.49	0.48	0.43	3.3	0.002	0.58	0.0	0.04	16.12	0.00	2.083	14.74	2.01	4.8	95.1	0.1	-0.26	1.02	0.54	0.57	0.70	11861	1457	3	0	0	0	0	logfile
✔	8HDW	34681	2024-02-13	2022-11-06	3.0	2.72	2.96	2.9	0.006	0.83	0.0	0.05	15.95	0.01	1.939	13.55	11.19	11.8	88.2	0.0	-2.56	0.46	0.72	1.96	2.8	0.004	0.76	1.0	0.04	17.32	0.01	1.710	13.23	6.00	8.4	91.6	0.0	-1.55	1.29	0.53	0.75	1.77	54552	7140	30	0	0	0	0	logfile
✔	8HDS	34679	2024-02-13	2022-11-06	3.57	3.28	3.59	3.4	0.007	1.11	0.0	0.06	10.70	0.01	2.312	4.13	0.63	10.9	89.1	0.0	-6.20	0.55	0.77	2.49	3.4	0.004	0.73	0.0	0.04	16.37	0.00	2.090	10.99	4.80	10.2	89.8	0.0	-2.92	1.24	0.58	0.79	1.73	53532	6864	24	0	0	0	0	logfile
✔	8HDR	34678	2024-02-19	2022-11-06	3.66	3.32	3.68	3.3	0.005	0.66	0.0	0.05	13.59	0.00	2.116	12.84	8.30	9.0	91.0	0.0	-2.65	0.60	0.74	1.89	3.3	0.002	0.68	0.0	0.04	16.10	0.00	2.164	10.62	4.66	6.4	93.6	0.0	-1.89	0.85	0.63	0.78	2.12	78708	10296	54	0	0	0	0	logfile
✔	8F1K	28791	2024-02-21	2022-11-05	2.8	3.72	2.83	3.2	0.002	0.47	0.0	0.04	15.01	0.00	2.130	4.40	1.30	2.3	97.7	0.0	0.58	0.88	0.82	2.68	3.2	0.006	0.60	0.0	0.04	16.35	0.00	2.095	5.69	0.85	2.8	97.2	0.0	1.13	1.61	0.89	0.85	2.59	30854	3689	14	95	3	10	0	logfile
✔	8F1J	28785	2024-02-21	2022-11-05	2.6	3.66	2.67	3.1	0.002	0.44	0.0	0.04	13.90	0.00	2.096	4.27	0.98	2.2	97.8	0.0	0.89	0.90	0.85	2.55	3.1	0.005	0.57	0.0	0.04	15.69	0.00	2.047	4.74	0.86	3.1	96.9	0.0	1.15	1.60	0.88	0.85	2.16	30829	3688	13	94	3	7	0	logfile
✔	8HDP	34677	2024-02-14	2022-11-05	3.2	3.72	3.07	3.5	0.003	0.76	0.0	0.08	12.51	0.00	2.006	7.86	0.57	2.7	97.3	0.0	-1.79	0.67	0.75	1.99	3.5	0.003	0.78	0.0	0.06	15.39	0.00	2.154	12.64	2.62	3.0	97.0	0.0	0.71	1.76	0.69	0.81	2.38	8282	1041	5	0	5	0	0	logfile
✔	8F1i	28797	2024-02-21	2022-11-05	3.0	3.91	—	3.4	0.003	0.53	0.0	0.04	14.60	0.00	2.170	5.59	0.89	3.4	96.6	0.0	-1.10	0.88	0.84	2.24	3.4	0.008	0.70	0.0	0.05	16.14	0.00	2.121	7.15	0.99	4.6	95.4	0.0	0.22	1.18	0.91	0.87	1.98	30670	3678	14	91	3	8	0	logfile
✔	8BJQ	16090	2024-02-22	2022-11-05	3.8	4.31	3.77	3.7	0.005	0.69	1.0	0.04	22.02	0.01	1.017	13.25	0.16	4.4	95.4	0.2	-0.16	0.72	0.78	0.75	3.7	0.005	0.72	2.0	0.04	22.58	0.01	1.077	21.72	3.76	6.0	93.9	0.1	-0.57	1.66	0.74	0.85	0.88	141384	8086	64	3580	211	0	0	logfile
✔	8F1D	28795	2024-02-15	2022-11-04	2.94	3.13	2.94	3.2	0.004	0.51	0.0	0.04	10.40	0.00	2.321	4.94	0.59	4.4	95.6	0.0	1.12	0.43	0.66	4.21	3.1	0.002	0.57	0.0	0.04	13.46	0.00	2.366	5.06	1.19	5.2	94.8	0.0	0.79	0.39	0.64	0.86	3.13	12888	1576	8	0	12	0	0	logfile
✔	8HDH	34673	2024-02-13	2022-11-04	3.1	2.51	3.16	3.1	0.017	2.35	1.0	0.09	14.15	0.01	2.036	6.66	1.00	3.9	95.6	0.5	-2.42	0.57	0.77	3.81	3.1	0.003	0.58	0.0	0.04	15.60	0.00	2.241	6.14	1.60	2.1	97.9	0.0	1.54	1.11	0.63	0.80	3.31	4778	615	3	0	3	4	0	logfile
✔	8F1C	28793	2024-02-19	2022-11-04	2.92	3.13	2.93	3.1	0.005	0.72	0.0	0.04	11.35	0.00	2.225	3.26	0.61	7.0	93.0	0.0	0.84	0.65	0.84	4.27	3.2	0.003	0.53	0.0	0.04	13.97	0.00	2.197	3.41	1.38	7.2	92.8	0.0	0.51	0.51	0.66	0.86	2.84	25116	1576	8	0	16	0	12184	logfile
✔	8BJF	16088	2024-02-14	2022-11-04	3.0	3.24	3.01	3.3	0.005	0.76	0.0	0.05	13.71	0.01	2.273	3.58	0.38	2.4	97.6	0.0	-1.24	0.61	0.85	3.29	3.3	0.004	0.59	0.0	0.04	14.70	0.00	2.147	7.42	1.44	2.0	98.0	0.0	1.59	0.45	0.57	0.83	2.39	9741	1195	2	0	6	0	0	logfile
✔	8BJM	16089	2024-02-16	2022-11-04	2.2	2.55	2.08	2.4	0.005	0.55	0.0	0.04	13.85	0.00	2.200	4.88	1.17	0.5	99.5	0.0	2.08	0.83	0.88	5.60	2.4	0.003	0.53	0.0	0.04	16.40	0.00	2.188	5.22	1.64	0.5	99.5	0.0	2.47	0.30	0.84	0.89	5.10	16655	2050	22	0	0	498	0	logfile
✔	8F19	28788	2024-02-14	2022-11-04	3.49	3.69	3.49	3.6	0.003	0.67	0.0	0.04	14.18	0.00	1.897	7.81	0.20	0.9	99.1	0.0	1.08	0.72	0.78	2.20	3.6	0.004	0.63	0.0	0.04	15.74	0.00	1.867	6.96	1.51	1.7	98.3	0.0	1.89	1.60	0.74	0.82	2.00	8717	1087	2	0	2	0	0	logfile
✔	8F1E	28796	2024-02-14	2022-11-04	3.28	4.11	3.32	3.8	0.003	0.67	0.0	0.04	17.52	0.00	1.853	11.76	0.17	1.7	98.3	0.0	1.76	0.88	0.84	1.17	3.7	0.003	0.55	0.0	0.04	17.43	0.00	1.878	10.20	2.26	1.9	98.1	0.0	2.14	0.45	0.90	0.90	1.18	10174	1273	4	0	2	0	0	logfile
✔	8F0X	28782	2024-02-14	2022-11-04	3.21	3.54	3.23	3.4	0.004	0.65	0.0	0.04	13.35	0.00	2.221	7.37	0.50	1.7	98.3	0.0	0.47	0.62	0.80	3.78	3.4	0.003	0.52	0.0	0.04	15.18	0.00	2.154	5.21	1.10	1.6	98.4	0.0	2.87	0.68	0.63	0.83	2.07	8743	1101	3	0	0	0	0	logfile
✔	8F0U	28781	2024-02-18	2022-11-04	3.1	3.37	3.22	3.6	0.031	1.77	0.0	0.13	9.86	0.01	2.388	0.67	0.00	0.8	99.2	0.0	0.72	0.31	0.31	0.91	3.5	0.005	0.69	0.0	0.05	14.09	0.00	1.903	8.39	1.73	6.6	93.4	0.0	-1.02	2.15	0.53	0.67	1.75	72240	4848	36	0	0	0	36756	logfile
✔	8BJA	16087	2024-02-19	2022-11-03	3.0	2.93	3.30	3.3	0.004	0.81	0.0	0.04	17.12	0.01	2.169	11.25	3.67	5.4	94.4	0.2	-0.80	0.78	0.75	1.53	3.3	0.004	0.84	0.0	0.04	17.38	0.01	2.091	12.77	3.35	5.5	94.5	0.1	-0.11	0.56	0.78	0.76	1.57	25204	3201	4	0	6	0	0	logfile

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