Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8BJA	16087	2024-02-19	2022-11-03	3.0	2.93	3.30	3.3	0.004	0.81	0.0	0.04	17.12	0.01	2.169	11.25	3.67	5.4	94.4	0.2	-0.80	0.78	0.75	1.53	3.3	0.004	0.84	0.0	0.04	17.38	0.01	2.091	12.77	3.35	5.5	94.5	0.1	-0.11	0.56	0.78	0.76	1.57	25204	3201	4	0	6	0	0	logfile
✔	8HCX	34667	2024-02-14	2022-11-03	3.5	2.57	3.28	3.3	0.003	0.62	0.0	0.04	16.43	0.00	2.117	10.84	0.31	2.5	97.2	0.4	0.14	0.71	0.71	1.23	3.2	0.003	0.74	0.0	0.04	17.07	0.00	2.050	15.77	4.93	3.1	96.7	0.2	0.45	1.11	0.73	0.73	1.10	8933	1159	6	0	0	0	0	logfile
✔	8HD7	34671	2024-02-14	2022-11-03	3.52	3.99	3.58	3.3	0.003	0.60	0.0	0.03	23.66	0.00	1.927	2.96	0.00	0.0	0.0	0.0	—	0.89	0.77	—	3.3	0.008	0.81	0.0	0.04	23.94	0.01	1.811	17.14	0.00	0.0	0.0	0.0	—	1.52	0.91	0.85	—	8983	0	1	419	28	0	0	logfile
✔	8F0o	28775	2024-02-19	2022-11-03	2.99	4.40	3.26	3.0	0.005	0.80	0.0	0.05	17.63	0.01	2.274	3.93	0.00	5.1	94.9	0.0	-2.73	0.81	0.83	1.70	3.0	0.003	0.69	0.0	0.04	16.11	0.00	2.155	11.65	0.97	4.9	95.1	0.0	0.35	0.53	0.82	0.85	1.51	24030	2968	16	0	38	0	0	logfile
✔	8HD6	34670	2024-02-14	2022-11-03	3.73	4.52	3.73	3.2	0.002	0.54	0.0	0.02	23.56	0.00	1.969	2.97	0.00	0.0	0.0	0.0	—	0.90	0.78	—	3.3	0.008	0.89	0.0	0.05	25.51	0.01	1.715	29.97	0.00	0.0	0.0	0.0	—	2.18	0.91	0.83	—	8980	0	1	419	25	0	0	logfile
✔	8F0A	28754	2024-02-17	2022-11-02	2.6	3.77	2.61	3.4	0.031	1.77	0.0	0.13	9.86	0.01	2.388	0.56	0.00	0.8	99.2	0.0	0.72	0.68	0.66	4.15	3.4	0.003	0.65	0.0	0.05	13.87	0.00	2.130	6.62	0.64	1.0	99.0	0.0	1.37	1.41	0.74	0.79	3.76	18060	1212	9	0	0	0	9189	logfile
✔	8HCo	34660	2024-02-14	2022-11-02	4.1	3.86	3.97	4.0	0.007	0.97	0.0	0.06	15.44	0.01	2.290	6.53	10.99	2.4	97.6	0.0	-2.36	0.52	0.65	—	3.9	0.003	0.71	0.0	0.04	13.09	0.00	2.164	13.82	0.00	2.6	97.4	0.0	0.12	0.84	0.58	0.75	—	9330	1194	11	0	1	0	0	logfile
✔	8BiP	16086	2024-02-19	2022-11-02	3.1	3.81	3.14	3.3	0.003	0.54	1.0	0.03	22.27	0.00	1.794	11.10	0.12	4.7	95.3	0.1	-0.06	0.77	0.88	2.78	3.3	0.004	0.64	2.0	0.04	22.33	0.00	1.779	13.04	2.63	4.9	95.0	0.1	-0.22	0.33	0.77	0.90	2.40	134392	7222	62	3580	234	0	0	logfile
✔	8F0G	28756	2024-02-17	2022-11-02	3.35	3.91	3.35	3.6	0.011	0.63	0.0	0.06	14.46	0.01	2.238	7.55	0.14	3.6	96.4	0.0	-0.20	0.79	0.84	2.12	3.6	0.002	0.54	0.0	0.04	14.58	0.00	2.178	8.04	1.80	3.6	96.4	0.0	0.26	1.37	0.80	0.86	1.76	19635	2492	11	0	24	0	0	logfile
✔	8HCN	34659	2024-02-19	2022-11-02	2.7	3.41	2.79	3.0	0.003	0.51	0.0	0.04	12.71	0.00	2.209	8.58	0.00	2.6	97.4	0.0	0.23	0.87	0.90	4.55	3.0	0.003	0.55	0.0	0.04	15.01	0.00	2.194	9.24	0.68	3.1	96.9	0.0	0.56	0.30	0.85	0.89	4.06	23568	3099	12	0	0	0	0	logfile
✔	8F0H	28757	2024-02-13	2022-11-02	3.18	3.63	3.09	3.5	0.003	0.50	0.0	0.04	10.68	0.00	2.256	7.02	0.38	4.0	96.0	0.0	-0.58	0.74	0.80	3.08	3.5	0.004	0.70	0.0	0.04	13.98	0.01	2.144	11.05	3.77	4.7	95.3	0.0	-1.01	1.34	0.73	0.81	2.89	4959	634	6	0	3	0	0	logfile
✔	8HCQ	34663	2024-02-14	2022-11-02	3.01	2.26	2.89	2.1	0.003	0.66	0.0	0.04	16.12	0.01	1.609	9.07	0.21	3.7	96.1	0.2	0.43	0.68	0.70	1.49	2.1	0.004	0.96	0.0	0.04	17.03	0.00	1.979	12.62	5.48	4.7	95.2	0.1	0.24	1.05	0.76	0.78	1.66	8991	1157	6	0	0	0	0	logfile
✔	8HCA	34657	2024-02-23	2022-11-01	4.35	3.96	4.32	3.6	0.003	0.60	0.0	0.05	13.56	0.00	2.250	5.79	0.44	4.6	95.4	0.0	-0.50	0.78	0.71	—	3.6	0.003	0.63	0.0	0.04	13.11	0.00	2.090	15.08	0.03	6.2	93.7	0.0	-0.75	1.81	0.80	0.77	—	35187	4449	24	0	54	0	0	logfile
✘	8HC8	34655	2024-02-13	2022-11-01	3.95	4.00	3.84	4.0	0.003	0.71	0.0	0.05	16.60	0.01	2.317	5.70	0.56	4.2	95.8	0.0	-1.17	0.64	0.70	0.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4832	628	4	0	1	0	0	logfile
✔	8HC3	34650	2024-02-21	2022-11-01	4.35	4.29	4.25	3.9	0.003	0.59	0.0	0.05	13.39	0.00	2.206	5.53	0.00	3.5	96.5	0.0	-0.31	0.81	0.74	—	3.9	0.004	0.63	0.0	0.05	12.96	0.00	2.023	13.81	0.00	4.9	95.1	0.0	-0.42	1.77	0.82	0.79	—	31497	3954	22	0	54	0	0	logfile
✔	8HC6	34653	2024-02-13	2022-11-01	4.69	5.06	4.63	4.8	0.003	0.57	0.0	0.05	13.45	0.00	2.296	4.88	0.12	4.6	95.4	0.0	-0.78	0.80	0.70	—	4.8	0.003	0.59	0.0	0.04	12.93	0.00	2.130	15.32	0.00	7.1	92.9	0.0	-1.25	0.72	0.82	0.75	—	7377	933	6	0	7	0	0	logfile
✔	8HCB	34658	2024-02-23	2022-11-01	4.18	3.75	4.00	3.4	0.003	0.60	0.0	0.05	13.63	0.00	2.231	5.71	0.39	4.5	95.5	0.0	-0.57	0.75	0.72	—	3.4	0.003	0.62	0.0	0.04	13.12	0.00	2.076	13.00	0.00	6.2	93.8	0.0	-0.60	1.72	0.77	0.77	—	35187	4449	24	0	54	0	0	logfile
✘	8HC4	34651	2024-02-25	2022-11-01	3.54	3.35	3.50	3.4	0.003	0.53	0.0	0.04	15.96	0.00	2.239	5.29	0.04	4.0	96.0	0.0	-0.76	0.48	0.48	0.93	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	45078	5805	30	0	54	0	0	logfile
✔	8HC5	34652	2024-02-15	2022-11-01	3.43	3.51	3.37	3.6	0.002	0.53	0.0	0.04	15.56	0.00	2.249	5.34	0.00	4.0	96.0	0.0	-0.79	0.60	0.59	1.15	3.5	0.006	0.67	0.0	0.05	15.89	0.00	2.056	11.08	2.44	6.2	93.8	0.0	-0.69	0.60	0.67	0.70	1.89	11400	1493	6	0	1	0	0	logfile
✔	8EZQ	28748	2024-02-18	2022-11-01	3.7	2.65	—	1.8	0.003	0.61	0.0	0.04	11.91	0.00	2.048	17.77	0.42	9.6	90.4	0.0	0.31	0.74	0.75	1.10	1.8	0.004	0.76	0.0	0.04	15.74	0.00	2.121	16.22	3.72	9.6	90.2	0.1	0.05	0.95	0.75	0.75	0.93	20456	2545	2	0	0	0	0	logfile

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