Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8BHW	16071	2024-02-18	2022-11-01	3.2	4.17	3.28	3.6	0.003	0.56	0.0	0.03	16.12	0.00	2.188	6.49	0.18	3.2	96.8	0.0	3.05	0.76	0.83	1.53	3.6	0.004	0.54	0.0	0.03	16.58	0.00	2.176	7.06	1.99	3.3	96.7	0.0	3.71	1.11	0.76	0.83	1.21	21240	2656	8	0	0	0	0	logfile
✔	8Bi4	16076	2024-02-24	2022-11-01	4.3	4.52	4.39	4.5	0.004	0.97	0.0	0.05	11.50	0.01	0.452	10.80	0.14	4.0	95.6	0.3	-0.49	0.64	0.81	—	4.5	0.004	0.75	0.0	0.05	13.48	0.00	2.050	8.51	0.04	4.9	95.1	0.0	-0.55	1.64	0.65	0.83	—	145200	19404	132	0	0	0	0	logfile
✔	8HC1	34648	2024-02-16	2022-11-01	2.3	2.91	2.33	2.6	0.005	0.50	0.0	0.04	15.03	0.00	2.168	6.79	0.69	3.1	96.9	0.0	0.95	0.82	0.87	4.32	2.6	0.005	0.57	0.0	0.04	16.11	0.00	2.141	8.06	1.23	3.1	96.9	0.0	1.04	0.34	0.82	0.89	4.25	120048	15468	48	0	0	0	0	logfile
✔	8EZJ	28743	2024-02-18	2022-11-01	3.3	2.34	—	1.5	0.004	0.55	0.0	0.04	11.20	0.00	2.195	10.74	0.23	8.6	91.4	0.0	0.57	0.75	0.77	1.96	1.9	0.003	0.63	0.0	0.04	14.82	0.00	2.132	11.13	2.44	7.6	92.3	0.0	0.42	0.38	0.75	0.76	1.74	23215	2891	6	0	2	0	0	logfile
✔	8EZ8	28730	2024-02-13	2022-10-31	2.78	3.04	2.78	3.0	0.004	0.62	0.0	0.05	17.32	0.00	1.943	10.37	1.89	4.1	95.8	0.2	-0.51	0.53	0.83	3.28	3.0	0.003	0.54	0.0	0.04	16.24	0.00	2.238	10.48	4.73	3.9	95.9	0.2	-0.46	0.22	0.52	0.83	3.22	4847	621	5	0	9	0	0	logfile
✔	8BHQ	16066	2024-02-20	2022-10-31	3.3	3.04	3.34	3.4	0.007	1.38	0.0	0.04	8.53	0.01	2.140	1.61	0.00	1.8	98.2	0.0	2.16	0.67	0.80	3.80	3.4	0.003	0.53	0.0	0.04	12.69	0.00	2.026	3.62	1.07	2.5	97.5	0.0	1.04	1.71	0.67	0.81	3.39	27215	1680	10	0	10	0	13415	logfile
✔	8BHM	16060	2024-02-20	2022-10-31	2.95	3.91	2.95	3.5	0.003	0.91	0.0	0.04	6.75	0.00	2.258	1.80	0.00	0.9	99.1	0.0	2.44	0.76	0.84	4.06	3.5	0.002	0.53	0.0	0.04	10.20	0.00	2.068	4.80	0.54	1.7	98.3	0.0	2.38	0.70	0.74	0.81	4.05	27180	1680	10	0	10	0	13415	logfile
✔	8EZ3	28728	2024-02-13	2022-10-31	2.5	2.94	2.70	2.9	0.004	0.64	0.0	0.05	18.43	0.00	2.080	8.39	4.85	4.1	95.9	0.0	-0.81	0.50	0.86	4.53	2.9	0.004	0.58	0.0	0.05	16.21	0.00	2.249	9.65	4.66	4.9	95.1	0.0	-0.72	0.19	0.45	0.81	4.18	4894	622	5	0	9	0	0	logfile
✔	8BHS	16068	2024-02-20	2022-10-31	3.24	3.78	3.26	3.5	0.020	0.75	0.0	0.04	7.51	0.00	2.122	5.68	0.00	1.2	98.8	0.0	1.23	0.77	0.83	3.91	3.5	0.002	0.48	0.0	0.04	10.96	0.00	2.226	6.38	0.74	1.3	98.7	0.0	1.33	0.69	0.78	0.84	3.60	27170	1680	10	0	10	0	13415	logfile
✔	8BHi	16055	2024-02-20	2022-10-31	2.67	3.28	2.79	3.1	0.010	1.01	0.0	0.04	12.04	0.00	2.022	3.11	0.00	2.7	97.3	0.0	1.52	0.72	0.86	5.53	3.1	0.003	0.51	0.0	0.04	13.49	0.00	2.137	4.10	1.01	2.2	97.8	0.0	1.28	1.11	0.70	0.86	5.17	27220	1680	10	0	10	0	13415	logfile
✔	8BHo	16063	2024-02-20	2022-10-31	2.93	3.61	2.99	3.4	0.013	0.71	0.0	0.04	7.53	0.01	2.092	2.60	0.00	0.9	99.1	0.0	2.52	0.75	0.81	4.12	3.4	0.002	0.58	0.0	0.04	11.66	0.00	2.122	4.58	0.60	2.0	98.0	0.0	1.99	1.31	0.72	0.79	3.69	27190	1680	10	0	10	0	13415	logfile
✔	8EZ7	28729	2024-02-13	2022-10-31	2.6	2.82	2.63	2.8	0.004	0.61	0.0	0.05	18.25	0.00	2.185	8.01	1.32	3.4	96.6	0.0	-0.10	0.51	0.85	3.91	2.8	0.003	0.58	0.0	0.05	16.08	0.00	2.176	8.21	2.64	3.7	96.3	0.0	-0.08	0.20	0.49	0.84	4.05	4927	624	5	0	9	0	0	logfile
✔	8HBV	34644	2024-02-13	2022-10-31	2.51	2.70	2.51	2.7	0.009	0.96	0.0	0.05	15.84	0.01	2.209	8.10	0.00	2.0	98.0	0.0	1.54	0.61	0.88	4.41	2.7	0.003	0.53	0.0	0.04	17.02	0.00	2.204	7.03	1.78	2.2	97.8	0.0	2.61	0.92	0.61	0.89	3.96	3279	414	3	0	3	0	0	logfile
✔	8EZA	28732	2024-02-21	2022-10-31	4.39	4.32	4.42	3.8	0.015	2.00	127.0	0.13	16.51	0.02	1.932	2.57	1.57	6.5	93.3	0.2	-2.97	0.78	0.58	—	3.8	0.003	0.69	0.0	0.04	15.35	0.00	2.160	11.71	0.00	3.8	96.2	0.0	0.12	3.59	0.81	0.68	—	93588	11307	24	122	42	0	0	logfile
✔	8HBW	34645	2024-02-13	2022-10-31	2.57	2.69	2.51	2.7	0.010	1.05	0.0	0.05	16.26	0.01	2.199	7.29	0.00	2.2	97.8	0.0	1.60	0.63	0.87	4.58	2.7	0.003	0.54	0.0	0.04	16.66	0.00	2.141	7.75	3.26	2.2	97.8	0.0	2.98	1.22	0.58	0.87	3.92	3309	414	3	0	4	0	0	logfile
✘	8BHK	16058	2024-02-20	2022-10-31	3.3	3.34	3.25	3.4	0.002	0.36	0.0	0.04	13.09	0.01	2.195	1.28	0.20	1.7	98.3	0.0	1.80	0.68	0.78	3.32	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	27165	1680	10	0	10	0	13415	logfile
✔	8BHR	16067	2024-02-20	2022-10-31	3.38	3.40	3.32	3.4	0.004	0.80	0.0	0.04	7.33	0.01	2.050	1.32	0.00	0.9	99.1	0.0	2.26	0.70	0.83	4.51	3.4	0.005	0.54	0.0	0.04	14.05	0.00	2.133	4.06	2.55	2.2	97.8	0.0	0.54	1.39	0.70	0.85	3.58	27215	1680	10	0	10	0	13415	logfile
✔	8BH7	16049	2024-02-25	2022-10-30	4.23	9.20	—	4.5	0.005	0.83	0.0	0.07	25.73	0.01	2.136	63.21	0.43	7.8	92.2	0.0	-3.39	0.91	0.80	—	4.5	0.004	0.80	0.0	0.04	25.35	0.01	1.941	58.93	0.05	11.7	88.3	0.0	-2.72	1.32	0.92	0.82	—	52615	2464	21	1541	0	0	0	logfile
✔	8BHB	16051	2024-02-20	2022-10-30	2.54	3.17	2.64	3.0	0.003	0.42	0.0	0.04	7.20	0.02	2.149	2.09	0.00	0.9	99.1	0.0	2.13	0.73	0.88	5.71	3.0	0.003	0.46	0.0	0.04	12.74	0.00	2.272	2.35	1.34	2.3	97.7	0.0	2.27	0.65	0.72	0.88	5.11	27250	1680	15	0	10	65	13415	logfile
✔	8BHA	16050	2024-02-20	2022-10-30	2.67	3.29	2.72	3.1	0.008	0.58	0.0	0.04	7.91	0.00	2.088	1.76	0.00	1.2	98.8	0.0	2.00	0.74	0.88	5.51	3.1	0.003	0.49	0.0	0.04	12.53	0.00	2.110	4.06	0.60	1.9	98.1	0.0	1.71	0.81	0.72	0.88	4.58	27220	1680	10	0	10	0	13415	logfile

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