Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8BH7	16049	2024-02-25	2022-10-30	4.23	9.20	—	4.5	0.005	0.83	0.0	0.07	25.73	0.01	2.136	63.21	0.43	7.8	92.2	0.0	-3.39	0.91	0.80	—	4.5	0.004	0.80	0.0	0.04	25.35	0.01	1.941	58.93	0.05	11.7	88.3	0.0	-2.72	1.32	0.92	0.82	—	52615	2464	21	1541	0	0	0	logfile
✔	8HBN	34638	2024-02-13	2022-10-29	3.81	4.36	3.77	4.0	0.007	1.24	5.0	0.06	18.57	0.01	2.254	13.99	6.10	7.4	90.0	2.7	-1.66	0.66	0.81	1.11	4.0	0.003	0.78	0.0	0.04	17.54	0.00	2.217	10.01	4.58	6.4	93.4	0.2	-0.43	1.56	0.66	0.83	1.42	4189	536	2	0	0	0	0	logfile
✔	8EYX	28723	2024-02-18	2022-10-29	4.5	4.99	4.61	4.1	0.006	0.76	1.0	0.05	12.87	0.00	1.857	33.88	1.18	9.7	89.7	0.6	-1.73	0.86	0.74	—	4.1	0.002	0.61	0.0	0.04	12.76	0.00	2.159	14.82	0.12	6.6	93.1	0.2	-1.11	1.17	0.89	0.82	—	14298	1773	6	0	0	0	0	logfile
✔	8EYY	28724	2024-02-18	2022-10-29	4.9	6.21	5.32	4.3	0.003	0.58	0.0	0.04	12.98	0.00	2.165	21.05	0.06	7.2	92.6	0.2	-1.16	0.89	0.81	—	4.3	0.002	0.56	0.0	0.04	13.13	0.00	2.206	18.99	0.00	6.9	93.1	0.1	-0.88	1.12	0.90	0.84	—	14301	1773	6	0	0	0	0	logfile
✔	8EZ0	28725	2024-02-17	2022-10-29	3.7	4.09	3.78	3.9	0.004	0.63	0.0	0.04	15.91	0.00	2.130	13.69	0.12	7.3	92.7	0.0	-1.65	0.85	0.82	2.02	3.9	0.003	0.59	0.0	0.04	16.58	0.00	2.140	13.80	2.67	7.5	92.5	0.0	-1.48	1.15	0.85	0.82	2.01	14640	1815	6	0	0	0	0	logfile
✔	8HBD	34619	2024-02-14	2022-10-28	2.99	2.40	2.80	3.0	0.003	0.71	0.0	0.04	16.47	0.00	1.912	13.34	1.85	3.8	96.0	0.2	0.26	0.74	0.76	1.67	2.2	0.004	0.68	0.0	0.04	17.42	0.00	2.023	14.32	4.69	3.7	96.3	0.0	0.44	0.58	0.77	0.80	1.82	8803	1158	6	0	0	0	0	logfile
✔	8HBE	34623	2024-02-14	2022-10-28	3.2	3.29	—	3.4	0.007	0.73	0.0	0.05	15.14	0.00	2.217	8.96	0.00	3.5	96.5	0.0	-0.20	0.65	0.79	2.27	3.4	0.003	0.56	0.0	0.04	15.75	0.00	2.228	6.97	1.85	2.5	97.5	0.0	0.87	1.06	0.64	0.77	2.19	8610	1114	2	0	1	0	0	logfile
✔	8HBF	34627	2024-02-14	2022-10-28	3.1	3.32	—	3.3	0.010	0.84	1.0	0.05	15.94	0.01	1.951	9.76	0.46	3.2	96.6	0.2	-0.23	0.73	0.82	2.61	3.3	0.003	0.54	0.0	0.04	15.93	0.00	2.052	7.90	2.39	2.3	97.7	0.0	1.04	0.29	0.73	0.83	2.49	8448	1095	4	0	6	0	0	logfile
✔	8HBH	34632	2024-02-14	2022-10-28	3.1	3.30	—	3.3	0.008	0.84	0.0	0.05	15.29	0.01	2.007	10.23	0.90	3.2	96.8	0.0	-0.10	0.68	0.78	2.79	3.3	0.003	0.57	0.0	0.04	15.62	0.00	1.115	9.23	3.37	2.1	97.9	0.0	0.63	0.24	0.72	0.82	2.61	8502	1099	4	0	5	0	0	logfile
✔	8BGU	16036	2024-02-13	2022-10-28	4.1	5.77	3.97	4.0	0.003	0.84	0.0	0.04	23.47	0.00	2.235	4.09	0.00	5.0	95.0	0.0	-2.58	0.92	0.86	—	4.0	0.003	0.59	0.0	0.03	23.78	0.00	2.103	20.33	0.00	8.8	91.2	0.0	-0.76	2.44	0.92	0.87	—	4779	447	5	121	1	0	0	logfile
✔	8BGW	16041	2024-02-15	2022-10-28	2.2	1.96	2.24	2.2	0.016	2.06	2.0	0.09	19.30	0.02	1.923	16.69	3.84	6.1	93.4	0.5	-3.60	0.68	0.80	5.25	2.2	0.004	0.79	0.0	0.04	16.33	0.00	1.894	17.61	0.94	3.6	96.4	0.0	1.06	0.38	0.76	0.84	4.68	12927	1500	6	0	25	449	0	logfile
✔	8EYT	28720	2024-02-22	2022-10-28	2.8	3.17	2.92	2.9	0.018	1.45	18.0	0.09	22.87	0.01	1.450	12.50	1.31	5.1	93.9	0.9	-0.61	0.81	0.73	1.93	2.9	0.006	0.67	0.0	0.04	22.33	0.01	2.013	9.42	3.08	4.0	95.8	0.2	-0.10	0.59	0.89	0.90	1.84	50699	2588	21	1415	0	0	0	logfile
✔	8BGV	16039	2024-02-13	2022-10-28	3.27	3.26	3.18	3.4	0.009	1.72	0.0	0.10	12.41	0.01	2.452	0.84	1.49	6.7	93.3	0.0	-3.78	0.46	0.89	5.03	3.3	0.005	0.73	0.0	0.05	13.32	0.00	2.275	4.07	0.85	3.8	96.2	0.0	-2.53	1.30	0.41	0.87	3.59	4109	539	7	0	0	0	0	logfile
✔	8EYQ	28692	2024-02-14	2022-10-28	3.3	3.53	3.35	3.3	0.005	0.82	0.0	0.05	22.93	0.01	1.460	13.80	1.29	6.9	92.5	0.6	-2.06	0.87	0.78	1.33	3.3	0.004	0.70	0.0	0.04	22.73	0.01	2.071	11.05	5.79	5.4	94.5	0.1	-0.72	1.59	0.91	0.88	1.75	48190	1965	18	1525	0	0	0	logfile
✔	8BGS	16035	2024-02-13	2022-10-28	3.16	3.15	2.98	3.3	0.009	1.64	0.0	0.10	13.08	0.01	2.368	1.46	0.00	6.8	93.2	0.0	-3.72	0.43	0.86	5.04	3.3	0.004	0.75	0.0	0.05	15.35	0.00	2.218	5.73	1.73	2.5	97.5	0.0	-2.74	1.30	0.36	0.80	3.20	4018	525	7	0	0	0	0	logfile
✔	8EYR	28693	2024-02-15	2022-10-28	4.0	4.25	4.10	4.0	0.005	0.75	0.0	0.05	17.46	0.01	2.099	23.63	0.27	11.5	88.3	0.2	-2.62	0.86	0.82	—	4.0	0.003	0.68	0.0	0.05	17.75	0.00	2.214	16.45	4.42	8.4	91.4	0.2	-2.13	0.45	0.86	0.81	—	13635	1705	4	0	0	0	0	logfile
✔	8EYi	28690	2024-02-16	2022-10-27	2.7	3.30	2.69	3.1	0.017	0.98	0.0	0.05	16.32	0.01	2.204	10.69	2.06	2.0	98.0	0.0	0.27	0.80	0.81	2.89	3.1	0.003	0.54	0.0	0.04	16.20	0.00	2.180	10.00	2.12	1.8	98.2	0.0	0.46	0.23	0.80	0.81	3.07	16252	2172	4	0	4	0	0	logfile
✔	8BG9	16027	2024-02-13	2022-10-27	3.5	3.74	2.80	4.2	0.008	1.46	0.0	0.09	14.96	0.01	2.484	12.17	12.50	17.1	80.0	2.9	-5.16	0.38	0.79	4.51	4.1	0.003	0.65	0.0	0.05	15.13	0.00	2.282	6.08	8.93	4.3	95.7	0.0	-3.81	0.93	0.39	0.80	4.95	1692	222	6	0	0	0	0	logfile
✔	8BG6	16024	2024-02-13	2022-10-27	4.11	4.22	3.92	4.2	0.006	0.94	0.0	0.06	12.58	0.01	2.348	6.39	0.00	6.9	93.1	0.0	-0.90	0.73	0.80	—	4.1	0.004	0.71	0.0	0.05	12.67	0.00	2.336	7.21	0.00	6.4	93.6	0.0	-0.10	0.95	0.75	0.84	—	3124	398	4	0	1	0	0	logfile
✔	8HB0	34610	2024-02-13	2022-10-27	2.9	2.62	2.75	2.7	0.016	2.33	4.0	0.09	13.73	0.00	2.153	6.66	0.80	3.9	95.9	0.2	-2.30	0.57	0.82	3.78	2.7	0.003	0.62	0.0	0.04	14.66	0.00	2.189	7.60	1.40	1.1	98.9	0.0	1.68	0.46	0.61	0.83	3.80	4778	615	3	0	3	4	0	logfile

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