Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Q9K	18284	2024-02-13	2023-08-20	3.2	3.24	3.02	3.3	0.011	2.00	0.0	0.09	9.09	0.01	2.527	0.79	0.00	5.1	94.9	0.0	-1.94	0.39	0.82	6.44	3.2	0.004	0.57	0.0	0.05	14.16	0.00	2.094	4.60	2.26	3.5	96.5	0.0	-1.46	1.48	0.35	0.85	5.80	6306	408	6	0	0	0	3216	logfile
✔	8Q98	18271	2024-02-13	2023-08-20	1.75	1.75	1.77	1.8	0.011	1.66	0.0	0.07	9.83	0.01	2.543	0.00	0.00	0.5	99.5	0.0	-0.80	0.22	0.65	8.64	1.8	0.002	0.49	0.0	0.05	13.57	0.00	2.336	2.28	0.51	0.2	99.8	0.0	-0.44	0.91	0.43	0.90	7.94	7032	450	6	0	0	0	3588	logfile
✔	8Q8Y	18265	2024-02-13	2023-08-19	2.88	2.50	2.59	2.7	0.011	1.89	4.0	0.11	12.93	0.01	2.516	0.00	0.00	2.3	97.7	0.0	-1.68	0.26	0.75	5.62	2.7	0.002	0.53	0.0	0.05	17.29	0.00	2.053	2.18	1.55	1.9	98.1	0.0	-1.41	1.19	0.35	0.88	5.17	6896	441	6	0	0	0	3521	logfile
✔	8Q92	18268	2024-02-13	2023-08-19	3.05	2.89	2.63	3.1	0.008	1.37	0.0	0.09	13.95	0.01	2.531	0.94	1.23	8.7	91.3	0.0	-3.17	0.37	0.86	4.77	3.1	0.006	0.79	0.0	0.06	15.47	0.00	2.335	5.38	2.06	8.7	91.3	0.0	-2.87	0.27	0.32	0.84	3.70	2091	282	3	0	0	0	0	logfile
✔	8Q8Z	18266	2024-02-13	2023-08-19	3.16	3.15	3.34	3.2	0.011	1.88	0.0	0.08	10.80	0.01	2.522	0.00	0.00	4.6	95.4	0.0	-2.15	0.29	0.75	6.08	3.2	0.003	0.52	0.0	0.05	13.80	0.00	2.011	4.41	0.25	1.1	98.9	0.0	-1.26	2.96	0.33	0.85	5.45	7032	450	6	0	0	0	3588	logfile
✔	8Q8X	18264	2024-02-13	2023-08-19	2.54	2.40	2.39	2.5	0.011	1.74	0.0	0.08	11.92	0.01	2.517	0.00	1.27	2.5	97.5	0.0	-1.63	0.27	0.77	6.72	2.4	0.005	0.65	0.0	0.05	16.11	0.00	2.244	3.57	1.53	2.3	97.7	0.0	-1.95	0.91	0.37	0.91	6.88	3435	453	6	0	0	0	0	logfile
✔	8Q96	18269	2024-02-13	2023-08-19	3.09	3.01	2.64	3.2	0.009	1.24	0.0	0.07	10.14	0.01	2.529	1.50	0.00	5.6	94.4	0.0	-3.54	0.47	0.86	5.83	3.1	0.004	0.67	0.0	0.05	14.93	0.00	2.120	3.99	3.00	5.6	94.4	0.0	-3.35	1.19	0.45	0.85	4.63	2100	224	12	0	88	0	0	logfile
✔	8Q8W	18263	2024-02-13	2023-08-19	2.85	2.92	2.74	2.9	0.011	1.75	0.0	0.09	11.10	0.01	2.483	0.00	0.00	2.9	97.1	0.0	-1.38	0.29	0.78	6.35	2.9	0.002	0.47	0.0	0.05	15.76	0.00	2.331	0.91	0.54	0.7	99.3	0.0	-0.61	1.98	0.39	0.89	6.58	6618	429	6	0	0	0	3372	logfile
✔	8KGK	37224	2024-02-13	2023-08-19	3.16	3.62	3.34	3.6	0.005	0.69	1.0	0.05	13.37	0.01	2.122	11.80	0.40	2.6	97.3	0.1	0.89	0.61	0.75	3.01	3.6	0.003	0.63	0.0	0.04	15.51	0.00	2.173	10.56	2.43	2.2	97.8	0.0	1.26	1.16	0.60	0.76	2.39	7476	1006	5	0	0	0	0	logfile
✔	8Q8R	18258	2024-02-13	2023-08-18	2.1	1.89	2.15	1.9	0.011	1.82	6.0	0.10	11.11	0.01	2.505	0.00	0.00	11.0	89.0	0.0	-1.41	0.39	0.83	5.91	1.9	0.007	0.86	0.0	0.06	16.75	0.00	2.274	4.81	6.06	8.6	91.4	0.0	-1.70	2.41	0.46	0.88	6.08	3468	456	6	0	0	0	0	logfile
✔	8Q8S	18259	2024-02-15	2023-08-18	2.68	2.07	2.67	2.3	0.011	2.11	3.0	0.10	9.52	0.01	2.513	0.47	0.00	7.2	92.8	0.0	-1.68	0.30	0.74	5.06	2.2	0.003	0.68	0.0	0.05	16.25	0.01	2.024	5.56	1.35	5.4	94.6	0.0	-2.75	1.86	0.31	0.79	4.99	10611	684	9	0	0	0	5409	logfile
✔	8TVX	41654	2024-02-14	2023-08-18	3.7	4.46	3.75	4.0	0.004	0.60	0.0	0.04	13.60	0.01	0.747	10.82	0.00	4.1	95.8	0.1	-0.36	0.86	0.79	1.88	4.0	0.004	0.62	0.0	0.04	15.32	0.00	1.894	14.69	0.96	6.0	93.9	0.1	-0.07	1.75	0.86	0.79	1.68	59056	3748	21	56	9	0	28608	logfile
✔	8KGE	37218	2024-02-13	2023-08-18	3.8	3.74	3.72	3.7	0.004	0.87	0.0	0.05	17.21	0.01	2.103	13.80	10.88	9.3	90.5	0.2	-2.27	0.45	0.79	3.10	3.7	0.005	0.73	0.0	0.05	17.29	0.00	2.165	13.09	10.36	10.8	89.0	0.2	-1.88	0.36	0.49	0.82	2.52	3584	486	2	0	0	0	0	logfile
✔	8Q8F	18253	2024-02-13	2023-08-18	2.93	2.97	2.77	3.0	0.011	1.82	0.0	0.08	12.08	0.01	2.504	0.00	0.76	5.4	94.6	0.0	-1.60	0.37	0.78	6.53	3.0	0.007	0.79	0.0	0.05	16.93	0.00	2.186	4.95	3.79	3.6	96.4	0.0	-2.12	3.80	0.42	0.91	4.91	3468	456	6	0	0	0	0	logfile
✔	8TVS	41650	2024-02-13	2023-08-18	4.4	4.59	4.48	4.1	0.004	0.77	0.0	0.05	15.19	0.00	1.713	10.23	0.00	4.5	95.5	0.1	-0.62	0.83	0.76	—	4.1	0.003	0.51	0.0	0.04	15.41	0.00	1.893	12.80	0.00	5.7	94.2	0.1	0.02	0.47	0.84	0.77	—	56913	3697	22	104	443	0	24971	logfile
✔	8Q8U	18261	2024-02-13	2023-08-18	3.3	3.53	3.24	3.8	0.011	1.97	3.0	0.11	12.59	0.01	2.505	0.00	0.00	6.3	93.7	0.0	-3.01	0.42	0.76	3.25	3.8	0.003	0.60	0.0	0.05	13.45	0.00	2.010	5.44	0.54	4.6	95.4	0.0	-2.14	1.35	0.45	0.77	2.83	6642	426	6	0	0	0	3396	logfile
✔	8Q8L	18254	2024-02-13	2023-08-18	3.04	3.14	2.87	3.3	0.011	2.07	2.0	0.11	11.49	0.01	2.539	0.29	0.00	5.3	94.5	0.2	-2.17	0.33	0.74	5.41	3.2	0.006	1.39	0.0	0.05	14.32	0.00	2.064	6.19	3.85	4.8	95.2	0.0	-2.50	0.75	0.43	0.83	4.78	3405	447	6	0	0	0	0	logfile
✔	8TVR	41649	2024-02-23	2023-08-18	2.8	3.01	—	2.9	0.003	0.53	0.0	0.05	16.18	0.00	2.196	7.80	1.72	4.9	95.1	0.0	-1.14	0.65	0.85	4.19	3.0	0.007	0.75	0.0	0.06	17.17	0.01	2.022	8.71	3.92	5.9	94.1	0.0	-1.53	1.19	0.65	0.86	4.34	38532	4950	24	0	0	0	0	logfile
✔	8TVP	41647	2024-02-15	2023-08-18	3.7	4.07	3.69	3.5	0.010	0.72	0.0	0.04	16.26	0.01	1.544	10.89	0.06	5.2	94.7	0.1	-0.31	0.85	0.79	2.25	3.5	0.002	0.55	0.0	0.04	16.68	0.00	1.954	12.29	0.39	4.7	95.3	0.1	0.14	0.34	0.85	0.79	2.06	63938	3748	22	103	443	0	29847	logfile
✔	8TVV	41652	2024-02-14	2023-08-18	3.7	4.35	3.80	3.9	0.004	0.62	0.0	0.05	13.42	0.00	1.785	8.84	0.00	4.1	95.9	0.1	-0.09	0.86	0.76	1.61	3.9	0.003	0.54	0.0	0.04	14.51	0.00	1.905	9.84	0.89	4.6	95.3	0.1	0.67	1.24	0.87	0.78	1.26	58341	3747	21	56	9	0	28238	logfile

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