Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8TVS	41650	2024-02-13	2023-08-18	4.4	4.59	4.48	4.1	0.004	0.77	0.0	0.05	15.19	0.00	1.713	10.23	0.00	4.5	95.5	0.1	-0.62	0.83	0.76	—	4.1	0.003	0.51	0.0	0.04	15.41	0.00	1.893	12.80	0.00	5.7	94.2	0.1	0.02	0.47	0.84	0.77	—	56913	3697	22	104	443	0	24971	logfile
✔	8KGE	37218	2024-02-13	2023-08-18	3.8	3.74	3.72	3.7	0.004	0.87	0.0	0.05	17.21	0.01	2.103	13.80	10.88	9.3	90.5	0.2	-2.27	0.45	0.79	3.10	3.7	0.005	0.73	0.0	0.05	17.29	0.00	2.165	13.09	10.36	10.8	89.0	0.2	-1.88	0.36	0.49	0.82	2.52	3584	486	2	0	0	0	0	logfile
✔	8TVX	41654	2024-02-14	2023-08-18	3.7	4.46	3.75	4.0	0.004	0.60	0.0	0.04	13.60	0.01	0.747	10.82	0.00	4.1	95.8	0.1	-0.36	0.86	0.79	1.88	4.0	0.004	0.62	0.0	0.04	15.32	0.00	1.894	14.69	0.96	6.0	93.9	0.1	-0.07	1.75	0.86	0.79	1.68	59056	3748	21	56	9	0	28608	logfile
✔	8Q8S	18259	2024-02-15	2023-08-18	2.68	2.07	2.67	2.3	0.011	2.11	3.0	0.10	9.52	0.01	2.513	0.47	0.00	7.2	92.8	0.0	-1.68	0.30	0.74	5.06	2.2	0.003	0.68	0.0	0.05	16.25	0.01	2.024	5.56	1.35	5.4	94.6	0.0	-2.75	1.86	0.31	0.79	4.99	10611	684	9	0	0	0	5409	logfile
✔	8TVV	41652	2024-02-14	2023-08-18	3.7	4.35	3.80	3.9	0.004	0.62	0.0	0.05	13.42	0.00	1.785	8.84	0.00	4.1	95.9	0.1	-0.09	0.86	0.76	1.61	3.9	0.003	0.54	0.0	0.04	14.51	0.00	1.905	9.84	0.89	4.6	95.3	0.1	0.67	1.24	0.87	0.78	1.26	58341	3747	21	56	9	0	28238	logfile
✔	8Q8R	18258	2024-02-13	2023-08-18	2.1	1.89	2.15	1.9	0.011	1.82	6.0	0.10	11.11	0.01	2.505	0.00	0.00	11.0	89.0	0.0	-1.41	0.39	0.83	5.91	1.9	0.007	0.86	0.0	0.06	16.75	0.00	2.274	4.81	6.06	8.6	91.4	0.0	-1.70	2.41	0.46	0.88	6.08	3468	456	6	0	0	0	0	logfile
✔	8Q8E	18252	2024-02-13	2023-08-18	3.81	3.69	3.74	3.9	0.012	2.01	6.0	0.11	11.64	0.01	1.524	5.19	0.00	9.0	91.0	0.0	-2.95	0.28	0.52	2.07	4.0	0.003	0.80	0.0	0.05	15.19	0.01	2.133	12.17	6.15	6.8	93.2	0.0	-3.35	1.88	0.35	0.78	2.71	6810	894	12	0	0	0	0	logfile
✔	8Q8V	18262	2024-02-13	2023-08-18	3.8	3.56	3.64	3.9	0.012	2.00	2.0	0.09	12.46	0.01	2.510	1.71	0.00	6.4	93.6	0.0	-2.75	0.30	0.69	4.41	4.0	0.004	1.27	0.0	0.05	14.36	0.01	2.145	14.66	1.01	6.6	93.4	0.0	-3.14	2.97	0.32	0.78	4.93	7032	450	6	0	0	0	3588	logfile
✔	8TVR	41649	2024-02-23	2023-08-18	2.8	3.01	—	2.9	0.003	0.53	0.0	0.05	16.18	0.00	2.196	7.80	1.72	4.9	95.1	0.0	-1.14	0.65	0.85	4.19	3.0	0.007	0.75	0.0	0.06	17.17	0.01	2.022	8.71	3.92	5.9	94.1	0.0	-1.53	1.19	0.65	0.86	4.34	38532	4950	24	0	0	0	0	logfile
✔	8TVU	41651	2024-02-14	2023-08-18	3.0	3.36	—	3.2	0.003	0.58	0.0	0.04	19.51	0.01	2.196	8.23	3.55	3.3	96.7	0.0	1.18	0.64	0.85	2.26	3.2	0.005	0.60	0.0	0.04	19.49	0.00	2.034	8.42	3.13	3.5	96.5	0.0	1.57	0.25	0.61	0.85	2.49	72840	9120	24	0	0	0	0	logfile
✔	8Q7T	18233	2024-02-14	2023-08-17	3.0	2.38	2.99	3.1	0.011	1.80	0.0	0.09	12.35	0.01	2.480	0.10	0.18	2.4	97.6	0.0	-1.65	0.27	0.65	4.83	2.9	0.005	0.63	0.0	0.05	16.61	0.00	2.043	6.25	2.29	2.7	97.3	0.0	-1.53	1.22	0.34	0.83	4.98	10083	654	9	0	0	0	5136	logfile
✔	8KG9	37215	2024-02-15	2023-08-17	4.52	8.93	5.25	4.5	0.004	0.77	0.0	0.05	14.79	0.00	1.015	36.87	0.74	6.0	93.8	0.3	-0.28	0.88	0.79	—	4.5	0.004	0.70	0.0	0.04	14.84	0.00	1.828	36.32	0.00	6.5	93.3	0.2	-0.53	0.36	0.88	0.77	—	63507	7910	25	23	15	0	0	logfile
✔	8Q85	18247	2024-02-14	2023-08-17	3.97	4.11	3.83	3.9	0.004	0.92	0.0	0.05	17.20	0.01	2.146	18.47	0.53	2.9	97.1	0.0	1.93	0.61	0.75	0.67	3.9	0.007	1.04	1.0	0.05	17.52	0.00	2.050	21.05	3.26	2.8	97.2	0.0	3.59	1.16	0.61	0.74	1.11	10299	1436	12	0	0	0	0	logfile
✔	8KG6	37211	2024-02-17	2023-08-17	3.07	3.71	3.17	3.4	0.004	0.59	0.0	0.04	15.74	0.00	1.954	11.17	1.30	5.1	94.8	0.2	-0.01	0.81	0.81	2.03	3.4	0.003	0.56	1.0	0.04	16.53	0.00	1.928	10.15	1.09	4.7	95.3	0.0	0.22	0.28	0.80	0.82	1.86	70613	8703	27	57	17	0	0	logfile
✔	8KG8	37213	2024-02-15	2023-08-17	4.23	6.03	4.25	4.2	0.002	0.58	0.0	0.04	14.46	0.00	1.997	13.72	0.01	4.1	95.9	0.0	0.19	0.84	0.78	—	4.2	0.002	0.56	0.0	0.04	14.33	0.00	1.938	16.39	0.03	4.9	95.1	0.0	0.25	1.20	0.86	0.83	—	63829	7950	25	25	17	0	0	logfile
✔	8Q7Y	18244	2024-02-14	2023-08-17	2.6	2.67	2.58	2.6	0.003	0.69	0.0	0.04	19.41	0.00	2.081	13.77	3.87	5.6	94.4	0.0	-1.10	0.64	0.77	3.25	2.6	0.004	0.71	0.0	0.05	18.98	0.00	2.121	11.93	4.91	7.9	92.1	0.0	-0.91	0.47	0.67	0.83	3.15	10032	1212	4	0	0	0	0	logfile
✔	8Q84	18246	2024-02-18	2023-08-17	3.15	3.94	3.45	3.5	0.003	0.74	0.0	0.04	15.74	0.00	2.054	12.03	0.58	2.3	97.6	0.1	3.51	0.69	0.85	0.94	3.5	0.004	0.71	0.0	0.04	16.69	0.00	2.097	13.29	3.10	2.4	97.5	0.1	4.28	0.51	0.67	0.81	0.88	21802	3115	25	0	0	0	0	logfile
✔	8Q7C	18212	2024-02-18	2023-08-16	2.9	4.06	3.13	3.6	0.004	0.54	0.0	0.04	14.30	0.00	2.140	7.64	3.64	3.1	96.9	0.0	-0.10	0.90	0.90	4.16	3.6	0.004	0.59	0.0	0.04	14.71	0.00	2.139	7.78	3.38	3.2	96.8	0.0	0.09	0.23	0.90	0.90	3.90	21348	2670	3	0	0	0	0	logfile
✔	8Q7P	18228	2024-02-13	2023-08-16	3.28	3.24	3.20	3.3	0.011	1.82	0.0	0.09	11.62	0.01	2.479	0.00	0.00	1.4	98.6	0.0	-1.91	0.36	0.78	5.16	3.3	0.004	0.64	0.0	0.05	16.24	0.00	2.224	6.21	3.08	1.8	98.2	0.0	-2.19	1.41	0.42	0.87	5.27	3402	450	6	0	0	0	0	logfile
✔	8Q7M	18224	2024-02-13	2023-08-16	3.26	3.16	3.21	3.3	0.011	1.96	4.0	0.11	11.70	0.01	2.490	0.38	0.17	3.1	96.9	0.0	-1.88	0.32	0.70	3.84	3.2	0.006	0.76	0.0	0.05	15.05	0.00	2.219	6.33	1.88	1.8	98.2	0.0	-1.83	0.84	0.36	0.87	4.15	5109	669	9	0	0	0	0	logfile

• ← previous
• Page 16 of 633
• next →