Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DW2	27749	2024-02-14	2022-07-30	4.11	4.56	4.33	4.3	0.003	0.81	0.0	0.05	17.65	0.01	2.127	18.20	0.48	6.2	93.7	0.1	-0.94	0.76	0.78	—	4.3	0.003	0.68	0.0	0.04	14.06	0.01	2.132	16.25	0.00	7.6	92.3	0.1	-0.77	1.03	0.77	0.80	—	9364	1223	7	0	3	0	0	logfile
✔	7YNG	33961	2024-02-13	2022-07-30	3.1	3.08	2.33	3.4	0.009	0.85	0.0	0.06	13.71	0.00	2.192	9.66	0.00	10.4	89.6	0.0	-4.25	0.36	0.76	3.68	3.4	0.003	0.56	0.0	0.05	14.79	0.00	2.286	7.62	0.00	4.9	95.1	0.0	-2.13	0.35	0.34	0.75	3.30	2628	378	6	0	0	0	0	logfile
✔	7YNB	33957	2024-02-16	2022-07-30	3.46	3.65	3.47	3.6	0.005	0.72	0.0	0.05	18.41	0.01	2.127	7.12	1.26	11.0	88.8	0.2	-4.52	0.83	0.87	2.37	3.6	0.002	0.59	0.0	0.04	18.52	0.00	2.169	6.00	1.64	10.0	90.0	0.0	-1.75	1.16	0.84	0.89	2.03	13847	1536	3	66	0	0	0	logfile
✔	7YNC	33958	2024-02-16	2022-07-30	3.14	3.40	3.24	3.4	0.003	0.65	0.0	0.04	18.05	0.01	2.130	6.93	1.04	10.6	89.4	0.1	-4.51	0.77	0.84	2.55	3.4	0.003	0.64	0.0	0.04	18.46	0.00	2.136	6.30	2.75	11.5	88.5	0.0	-2.01	1.16	0.78	0.87	2.40	13848	1536	3	66	0	0	0	logfile
✔	8AKN	15488	2024-02-25	2022-07-30	2.3	1.94	2.20	2.2	0.013	1.78	0.0	0.17	22.66	0.02	1.528	3.25	2.19	5.9	93.2	0.9	-3.31	0.61	0.80	5.18	2.1	0.006	0.83	0.0	0.04	22.94	0.01	1.754	6.96	3.95	2.9	97.0	0.1	-0.18	1.19	0.72	0.85	4.94	146513	5960	103	4552	309	1754	0	logfile
✘	8DW3	27750	2024-02-14	2022-07-30	4.26	4.66	4.43	4.4	0.013	0.95	0.0	0.05	17.59	0.01	1.895	15.23	0.10	5.7	94.2	0.1	-0.89	0.75	0.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9351	1223	7	0	3	0	0	logfile
✔	7YMZ	33948	2024-02-20	2022-07-29	4.39	8.19	4.54	4.5	0.005	0.89	1.0	0.06	16.43	0.01	2.199	7.09	0.70	6.4	93.4	0.2	-1.39	0.89	0.77	—	4.5	0.003	0.66	0.0	0.04	14.17	0.00	2.046	22.72	0.00	7.2	92.8	0.0	-0.79	0.57	0.92	0.87	—	27891	3498	27	0	63	0	0	logfile
✔	7YN0	33949	2024-02-20	2022-07-29	4.1	4.36	4.06	4.2	0.005	0.83	6.0	0.06	18.73	0.01	2.218	5.68	0.30	5.1	94.7	0.2	-0.74	0.84	0.79	—	4.2	0.003	0.67	0.0	0.04	15.42	0.00	2.100	12.70	0.00	6.2	93.8	0.0	-0.61	1.61	0.85	0.81	—	27912	3498	21	0	63	0	0	logfile
✔	8DVi	27739	2024-02-19	2022-07-29	3.2	2.70	3.23	3.1	0.004	0.68	0.0	0.05	12.49	0.00	1.856	10.77	1.78	4.9	95.1	0.0	0.23	0.65	0.78	2.56	2.7	0.004	0.72	1.0	0.05	16.56	0.00	1.930	11.04	1.74	4.8	95.2	0.0	0.33	0.80	0.67	0.82	2.34	23693	2914	14	17	10	0	0	logfile
✔	7YMX	33946	2024-02-20	2022-07-29	4.44	8.52	4.33	4.6	0.004	0.83	2.0	0.05	15.81	0.01	2.240	7.67	0.33	5.9	94.1	0.1	-1.19	0.89	0.80	—	4.6	0.004	0.68	0.0	0.04	14.09	0.00	2.043	26.02	0.00	7.5	92.5	0.0	-0.95	1.24	0.92	0.74	—	27775	3498	18	0	53	0	0	logfile
✔	8DVU	27745	2024-02-13	2022-07-29	2.9	3.07	2.86	3.0	0.002	0.51	0.0	0.04	16.46	0.00	2.164	6.25	1.01	6.2	93.8	0.0	-2.23	0.73	0.84	3.49	3.0	0.003	0.56	0.0	0.04	17.80	0.00	2.036	6.25	2.35	7.1	92.9	0.0	0.42	0.41	0.70	0.84	3.69	6170	669	3	36	3	0	0	logfile
✔	7YMY	33947	2024-02-20	2022-07-29	4.96	9.09	5.33	5.2	0.006	0.96	3.0	0.06	16.64	0.01	2.203	11.52	0.50	8.6	91.2	0.2	-2.07	0.89	0.80	—	5.2	0.003	0.66	0.0	0.05	14.39	0.00	2.094	21.82	0.00	7.2	92.8	0.0	-1.47	1.25	0.91	0.85	—	27677	3498	15	0	46	0	0	logfile
✔	8DVS	27744	2024-02-13	2022-07-29	3.0	3.15	2.97	3.2	0.002	0.47	0.0	0.04	15.92	0.00	2.271	7.41	1.32	6.8	93.2	0.0	-1.94	0.68	0.80	2.76	3.2	0.003	0.57	0.0	0.04	17.47	0.00	2.150	6.32	4.61	9.0	91.0	0.0	0.51	0.46	0.71	0.85	3.34	6058	682	3	26	3	0	0	logfile
✔	8DVV	27746	2024-02-15	2022-07-29	3.68	4.01	3.75	3.6	0.003	0.67	0.0	0.04	17.69	0.00	2.197	6.25	0.26	11.3	88.1	0.5	-1.71	0.74	0.71	0.83	3.7	0.004	0.66	0.0	0.04	18.06	0.00	2.110	11.17	3.93	12.1	87.5	0.5	-1.14	0.41	0.75	0.73	0.87	119280	15972	12	0	8	0	0	logfile
✔	8DVR	27743	2024-02-13	2022-07-29	3.3	3.38	3.19	3.4	0.002	0.46	0.0	0.04	15.72	0.00	2.267	8.74	1.40	4.5	95.5	0.0	-2.25	0.67	0.75	1.81	3.4	0.003	0.60	0.0	0.04	17.38	0.00	2.281	10.19	2.63	6.2	93.8	0.0	0.03	0.54	0.71	0.82	2.05	5601	635	4	21	2	0	0	logfile
✘	7YMM	33933	2024-02-19	2022-07-28	3.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	136856	13220	120	0	788	0	0	logfile
✔	8DVE	27736	2024-02-14	2022-07-28	3.84	4.26	4.00	4.0	0.003	0.63	0.0	0.04	12.17	0.00	2.196	9.27	0.63	1.7	98.3	0.0	1.70	0.81	0.78	1.20	4.0	0.004	0.61	0.0	0.04	14.20	0.00	2.084	10.31	2.41	2.9	97.1	0.0	1.56	0.43	0.84	0.83	1.23	114229	16751	16	0	16	0	0	logfile
✔	8DVD	27735	2024-02-18	2022-07-28	4.12	4.71	4.34	4.3	0.007	1.07	0.0	0.07	24.44	0.00	1.932	5.05	0.69	8.0	91.9	0.1	-0.76	0.79	0.74	—	4.3	0.004	0.86	0.0	0.05	13.19	0.00	2.213	12.99	0.05	8.6	91.3	0.1	-1.24	1.76	0.84	0.81	—	20804	2137	83	0	302	0	0	logfile
✔	7YMJ	33930	2024-02-13	2022-07-28	3.35	3.65	3.24	3.6	0.005	0.95	0.0	0.05	14.75	0.01	2.349	1.30	0.00	3.6	96.4	0.0	-3.45	0.64	0.83	2.70	3.6	0.003	0.56	0.0	0.04	15.15	0.00	2.341	2.60	2.80	3.6	96.4	0.0	0.67	0.36	0.63	0.84	2.30	3085	396	3	0	1	0	0	logfile
✔	7YMH	33928	2024-02-13	2022-07-28	3.52	3.74	3.42	3.7	0.004	0.78	0.0	0.05	13.79	0.01	2.324	3.55	0.00	4.8	95.2	0.0	-4.54	0.66	0.79	2.80	3.7	0.003	0.60	0.0	0.04	14.76	0.00	2.228	7.24	4.09	3.8	96.2	0.0	-0.41	0.51	0.66	0.79	1.84	3948	542	4	0	1	0	0	logfile

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