Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7YMH	33928	2024-02-13	2022-07-28	3.52	3.74	3.42	3.7	0.004	0.78	0.0	0.05	13.79	0.01	2.324	3.55	0.00	4.8	95.2	0.0	-4.54	0.66	0.79	2.80	3.7	0.003	0.60	0.0	0.04	14.76	0.00	2.228	7.24	4.09	3.8	96.2	0.0	-0.41	0.51	0.66	0.79	1.84	3948	542	4	0	1	0	0	logfile
✘	8AJL	15482	2024-02-25	2022-07-28	2.77	3.00	2.84	3.0	0.006	0.73	0.0	0.05	12.92	0.01	1.956	1.79	0.03	4.7	95.3	0.0	-0.64	0.47	0.65	4.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	51875	3327	15	0	63	0	25130	logfile
✔	7YMN	33934	2024-02-13	2022-07-28	3.46	3.33	3.01	3.9	0.007	0.73	0.0	0.05	12.25	0.00	2.234	11.60	0.00	17.6	82.4	0.0	-5.43	0.38	0.81	4.13	3.5	0.006	0.70	0.0	0.05	14.15	0.01	2.167	10.89	0.76	14.9	85.1	0.0	-4.76	0.32	0.42	0.84	3.93	3468	456	6	0	0	0	0	logfile
✔	8DVF	27737	2024-02-19	2022-07-28	3.3	2.89	3.38	3.2	0.004	0.68	0.0	0.05	12.51	0.00	1.862	10.34	1.78	4.9	95.1	0.0	0.22	0.64	0.75	2.04	2.9	0.005	0.79	1.0	0.04	16.98	0.00	1.867	13.59	2.89	6.0	94.0	0.0	-0.33	0.84	0.67	0.79	2.19	23693	2914	14	17	10	0	0	logfile
✘	7YMM	33933	2024-02-19	2022-07-28	3.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	136856	13220	120	0	788	0	0	logfile
✔	7YML	33931	2024-02-17	2022-07-28	2.6	2.70	2.57	2.7	0.019	1.86	0.0	0.06	22.92	0.02	2.035	11.68	1.88	2.6	97.4	0.0	1.32	0.80	0.88	4.86	2.7	0.004	0.71	0.0	0.04	16.73	0.00	2.008	10.29	1.68	2.4	97.6	0.0	2.40	0.93	0.80	0.91	3.87	18554	1848	50	0	89	7	0	logfile
✔	7YMJ	33930	2024-02-13	2022-07-28	3.35	3.65	3.24	3.6	0.005	0.95	0.0	0.05	14.75	0.01	2.349	1.30	0.00	3.6	96.4	0.0	-3.45	0.64	0.83	2.70	3.6	0.003	0.56	0.0	0.04	15.15	0.00	2.341	2.60	2.80	3.6	96.4	0.0	0.67	0.36	0.63	0.84	2.30	3085	396	3	0	1	0	0	logfile
✔	8DUE	27719	2024-02-18	2022-07-27	2.9	2.30	3.00	3.0	0.003	0.53	0.0	0.04	13.30	0.00	1.926	12.84	3.40	5.9	94.1	0.0	0.26	0.55	0.66	1.93	2.9	0.004	0.66	0.0	0.04	16.56	0.00	1.790	14.07	3.75	7.2	92.8	0.0	-0.38	1.32	0.61	0.71	1.50	20904	2592	12	10	10	0	0	logfile
✔	7YM8	33924	2024-02-13	2022-07-27	2.92	3.14	2.90	3.2	0.006	0.86	0.0	0.05	16.01	0.01	2.331	4.04	0.00	4.2	95.8	0.0	-3.62	0.68	0.81	3.68	3.2	0.002	0.53	0.0	0.04	16.18	0.00	2.228	6.41	1.86	3.5	96.5	0.0	0.28	0.39	0.65	0.82	3.04	4287	556	4	0	2	0	0	logfile
✔	8AJA	15475	2024-02-25	2022-07-27	2.59	2.78	2.62	2.8	0.006	0.80	0.0	0.05	12.81	0.01	2.036	1.99	0.00	4.1	95.9	0.0	-0.47	0.66	0.79	4.37	2.8	0.005	0.66	0.0	0.05	15.52	0.00	1.885	3.90	2.18	3.4	96.6	0.0	0.13	1.32	0.65	0.82	4.06	51153	3270	15	0	57	0	24870	logfile
✔	8DV2	27731	2024-02-13	2022-07-27	3.5	3.88	3.57	3.7	0.018	1.68	1.0	0.10	10.74	0.01	2.222	1.33	0.14	1.9	98.0	0.1	-0.17	0.78	0.79	2.69	3.7	0.004	0.73	0.0	0.05	15.32	0.00	2.200	11.11	2.29	3.4	96.5	0.1	1.31	0.91	0.78	0.80	1.79	6545	796	4	0	7	0	0	logfile
✔	7YLY	33921	2024-02-17	2022-07-27	3.05	3.00	3.12	3.3	0.006	0.86	11.0	0.05	10.60	0.00	1.830	2.42	0.72	3.9	96.0	0.1	-3.86	0.76	0.74	1.11	3.3	0.004	0.75	0.0	0.04	16.28	0.00	1.678	12.19	3.29	4.2	95.8	0.0	0.22	1.66	0.82	0.84	1.15	68656	8884	48	0	46	14	0	logfile
✔	7YLV	33918	2024-02-15	2022-07-27	3.91	4.23	4.38	4.3	0.009	0.68	0.0	0.06	10.36	0.00	2.239	1.53	0.03	2.3	97.6	0.2	-0.18	0.55	0.40	0.18	4.3	0.004	1.05	1.0	0.05	15.61	0.00	2.080	25.07	2.82	3.6	96.3	0.1	-0.32	2.25	0.74	0.73	0.18	65495	8564	17	0	0	0	0	logfile
✔	8DV1	27730	2024-02-13	2022-07-27	3.4	3.67	3.39	3.5	0.018	1.71	2.0	0.10	10.89	0.01	2.277	1.25	0.43	2.5	97.5	0.0	-0.24	0.79	0.80	2.48	3.5	0.004	0.73	0.0	0.05	15.41	0.00	2.163	11.36	2.72	3.9	96.1	0.0	0.87	1.52	0.79	0.82	1.97	6543	796	4	0	7	0	0	logfile
✔	8DUA	27718	2024-02-16	2022-07-27	4.32	5.26	4.35	4.3	0.005	0.79	4.0	0.06	19.51	0.00	1.889	5.05	0.19	5.6	94.2	0.2	-1.65	0.70	0.61	—	4.3	0.003	0.73	0.0	0.05	12.89	0.00	2.057	13.77	0.00	7.2	92.8	0.0	-1.69	2.56	0.80	0.81	—	15612	1815	33	0	87	0	0	logfile
✔	7YLW	33919	2024-02-17	2022-07-27	3.39	2.63	3.52	3.0	0.008	1.04	31.0	0.07	11.34	0.01	1.306	5.69	1.53	4.1	95.5	0.4	-3.65	0.69	0.68	0.71	3.0	0.004	0.77	0.0	0.04	16.65	0.00	1.155	14.09	4.29	4.7	95.3	0.0	-0.10	0.95	0.77	0.78	1.37	70338	9105	49	0	47	14	0	logfile
✔	7YLX	33920	2024-02-16	2022-07-27	3.2	2.89	3.32	3.3	0.007	0.90	13.0	0.06	10.71	0.00	1.418	2.68	0.87	3.7	96.1	0.2	-3.82	0.74	0.72	0.82	3.2	0.003	0.75	0.0	0.04	16.39	0.00	1.117	12.09	3.80	4.3	95.7	0.1	-0.01	2.15	0.82	0.84	1.33	67085	8693	47	0	46	14	0	logfile
✘	8DUL	27722	2024-02-16	2022-07-27	4.17	4.34	4.24	4.7	0.005	1.04	0.0	0.07	13.09	0.02	2.317	6.11	0.06	5.3	94.7	0.0	-2.03	0.56	0.49	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14203	1802	15	0	10	0	0	logfile
✔	8DUJ	27721	2024-02-13	2022-07-27	3.7	3.96	3.84	3.8	0.003	0.57	0.0	0.04	14.44	0.00	2.200	8.18	1.25	1.5	98.5	0.0	2.77	0.78	0.71	0.63	3.8	0.002	0.57	0.0	0.04	14.52	0.00	2.135	9.28	3.74	2.1	97.9	0.0	2.65	0.42	0.81	0.78	1.05	106156	16523	17	0	16	0	0	logfile
✔	7YLU	33917	2024-02-15	2022-07-27	4.55	4.26	5.68	4.4	0.002	0.44	0.0	0.04	6.30	0.00	1.304	3.45	0.11	1.9	98.0	0.1	2.63	0.69	0.62	—	4.4	0.004	0.72	0.0	0.05	10.99	0.00	2.092	19.45	0.01	4.1	95.8	0.1	0.05	1.16	0.74	0.72	—	65607	8578	17	0	0	0	0	logfile

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