Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DTM	27705	2024-02-15	2022-07-26	3.5	3.58	3.45	3.6	0.003	0.56	0.0	0.04	16.33	0.00	2.132	7.74	0.41	5.8	94.2	0.0	-0.79	0.71	0.80	2.96	3.6	0.003	0.52	0.0	0.04	16.91	0.00	2.145	7.19	2.33	5.6	94.4	0.0	-0.57	0.23	0.71	0.81	2.67	6498	802	3	0	0	0	0	logfile
✔	8DTP	27707	2024-02-18	2022-07-26	2.7	2.81	2.75	2.8	0.004	0.63	0.0	0.05	12.19	0.00	1.973	9.42	1.92	5.2	94.8	0.0	0.52	0.65	0.79	3.58	2.8	0.002	0.53	0.0	0.04	16.78	0.00	1.955	9.20	2.14	5.2	94.8	0.0	0.75	0.99	0.71	0.85	2.60	20944	2592	12	12	10	0	0	logfile
✔	8DTZ	27712	2024-02-18	2022-07-26	3.6	3.79	3.55	3.5	0.003	0.72	0.0	0.04	16.28	0.00	2.116	7.50	0.18	9.9	89.9	0.2	-1.55	0.69	0.62	0.92	3.5	0.004	0.68	0.0	0.04	17.31	0.00	2.061	12.00	2.69	10.9	89.0	0.1	-1.28	0.44	0.72	0.66	1.30	129524	16672	12	0	4	0	0	logfile
✔	8DTY	27711	2024-02-17	2022-07-26	3.5	3.95	3.53	3.7	0.003	0.61	0.0	0.04	15.94	0.00	2.188	5.52	0.23	5.7	94.2	0.1	-0.45	0.76	0.72	0.77	3.7	0.003	0.62	0.0	0.04	16.88	0.00	2.113	9.17	2.76	7.1	92.8	0.1	-0.09	0.52	0.77	0.75	1.00	128772	16444	12	0	4	0	0	logfile
✔	8DTo	27706	2024-02-18	2022-07-26	3.57	3.93	3.47	3.6	0.007	0.94	0.0	0.06	19.84	0.01	2.241	3.34	0.00	4.6	95.4	0.0	-1.43	0.81	0.84	2.58	3.6	0.005	0.64	0.0	0.05	14.35	0.00	2.051	8.81	1.56	4.9	95.1	0.0	-0.93	0.31	0.82	0.86	2.69	20923	2445	54	0	146	0	0	logfile
✔	8DU4	27715	2024-02-19	2022-07-26	3.55	3.67	3.48	3.6	0.004	0.69	0.0	0.04	25.34	0.01	2.118	14.07	1.78	4.2	95.8	0.0	-1.95	0.57	0.52	0.73	3.6	0.003	0.60	0.0	0.04	25.65	0.00	2.180	12.26	1.94	5.8	94.2	0.0	-1.40	1.69	0.65	0.64	0.91	17407	1446	13	292	0	0	0	logfile
✔	8DT3	27690	2024-02-13	2022-07-25	3.3	3.99	3.55	3.7	0.004	0.67	0.0	0.04	17.52	0.00	2.125	10.67	0.00	8.2	91.8	0.0	-0.65	0.78	0.83	2.90	3.7	0.004	0.68	0.0	0.04	15.42	0.00	2.161	12.01	3.83	7.8	92.2	0.0	-0.50	0.40	0.79	0.85	2.85	3821	485	4	0	3	0	0	logfile
✔	8DTG	27697	2024-02-15	2022-07-25	3.9	3.99	3.88	3.9	0.004	0.63	0.0	0.04	12.36	0.01	2.136	8.01	0.00	5.6	94.4	0.0	0.05	0.81	0.80	2.03	3.9	0.003	0.69	0.0	0.04	14.68	0.00	2.119	10.75	1.69	2.7	97.3	0.0	1.96	1.01	0.81	0.83	1.22	11451	1539	2	0	0	0	0	logfile
✔	8DTH	27698	2024-02-15	2022-07-25	3.6	3.70	3.53	3.6	0.003	0.60	0.0	0.04	12.28	0.01	2.196	3.90	0.00	5.5	94.5	0.0	-0.11	0.84	0.83	2.66	3.6	0.003	0.58	0.0	0.04	14.12	0.00	2.171	7.30	1.01	2.2	97.8	0.0	2.69	0.39	0.85	0.84	2.30	11153	1437	2	0	0	0	0	logfile
✔	8DTi	27699	2024-02-14	2022-07-25	3.8	3.87	—	3.8	0.006	0.66	0.0	0.04	14.51	0.00	2.196	4.70	0.00	2.9	97.1	0.0	1.82	0.81	0.76	2.21	3.8	0.002	0.52	0.0	0.04	15.26	0.00	2.204	7.98	2.36	2.3	97.7	0.0	2.11	0.39	0.82	0.78	2.06	9455	1258	4	0	2	0	0	logfile
✔	8DTF	27696	2024-02-15	2022-07-25	3.7	3.84	3.71	3.7	0.003	0.72	0.0	0.04	11.94	0.01	2.250	8.95	0.00	4.4	95.6	0.0	0.35	0.83	0.79	2.41	3.7	0.002	0.60	0.0	0.04	14.40	0.00	2.265	9.20	1.23	2.1	97.9	0.0	2.62	1.36	0.85	0.85	1.52	12414	1606	2	0	0	0	0	logfile
✔	8DTK	27703	2024-02-13	2022-07-25	3.77	3.96	3.71	4.0	0.005	0.79	0.0	0.09	16.06	0.01	2.096	4.32	0.00	4.5	95.5	0.0	-2.29	0.63	0.71	2.78	4.0	0.003	0.66	0.0	0.09	15.86	0.00	1.977	12.40	1.56	7.9	92.1	0.0	-2.23	0.52	0.64	0.74	2.86	6914	449	4	0	2	0	3363	logfile
✘	8DTB	27695	2024-02-15	2022-07-25	3.14	3.27	3.11	3.2	0.003	0.62	0.0	0.04	18.08	0.00	2.175	9.05	0.99	1.9	98.1	0.0	1.18	0.66	0.74	0.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13724	1765	9	0	7	0	0	logfile
✔	7YKW	33897	2024-02-13	2022-07-25	3.6	4.09	3.10	4.0	0.012	1.76	0.0	0.09	13.04	0.00	2.538	10.73	0.00	3.9	96.1	0.0	-3.01	0.63	0.78	4.01	4.0	0.007	0.78	0.0	0.04	14.27	0.00	2.222	14.99	4.33	1.7	98.3	0.0	-4.79	1.49	0.63	0.77	3.77	1908	256	8	0	0	0	0	logfile
✔	7YL7	33903	2024-02-13	2022-07-25	3.3	3.54	3.17	3.5	0.004	1.05	0.0	0.04	11.95	0.00	2.196	22.56	0.00	4.9	95.1	0.0	-5.16	0.45	0.78	4.82	3.4	0.008	0.82	0.0	0.05	13.81	0.00	2.123	16.24	1.85	17.2	82.8	0.0	-5.31	0.77	0.45	0.79	5.20	2988	402	12	0	0	0	0	logfile
✔	7YL3	33902	2024-02-13	2022-07-25	3.2	3.58	3.19	3.5	0.011	2.22	0.0	0.06	12.08	0.00	1.654	22.50	0.00	3.3	96.7	0.0	-4.03	0.45	0.76	4.44	3.5	0.005	0.74	0.0	0.04	13.39	0.00	2.147	7.43	4.32	7.8	92.2	0.0	-4.81	1.29	0.42	0.76	5.06	2958	396	12	0	0	0	0	logfile
✔	7YLA	33904	2024-02-17	2022-07-25	2.52	2.04	2.52	1.6	0.006	0.71	0.0	0.04	22.86	0.01	1.980	8.85	0.75	4.3	95.5	0.3	-0.94	0.81	0.81	3.97	1.6	0.008	0.69	0.0	0.04	22.67	0.01	1.830	11.13	1.53	4.9	95.0	0.1	-0.78	1.10	0.83	0.84	3.66	125784	3775	36	2994	6	0	32052	logfile
✔	7YL0	33901	2024-02-13	2022-07-25	3.2	3.47	3.15	3.4	0.016	2.51	0.0	0.11	15.56	0.01	2.515	18.86	0.00	5.0	95.0	0.0	-4.14	0.41	0.74	4.76	3.4	0.003	0.73	0.0	0.04	13.89	0.00	2.136	10.54	2.78	10.0	90.0	0.0	-4.36	1.69	0.44	0.78	5.01	2958	396	12	0	0	0	0	logfile
✔	8DT8	27692	2024-02-18	2022-07-25	3.34	3.09	3.27	3.1	0.005	0.97	0.0	0.06	10.60	0.01	2.083	1.13	0.20	2.8	97.2	0.0	0.67	0.71	0.82	2.81	3.1	0.003	0.59	0.0	0.04	14.05	0.00	2.092	7.92	1.93	3.2	96.7	0.0	0.78	0.75	0.73	0.85	2.63	22796	2900	8	0	13	0	0	logfile
✔	8AHX	15452	2024-02-15	2022-07-24	3.11	3.79	3.18	3.6	0.007	0.92	0.0	0.22	19.65	0.00	2.203	5.77	0.71	5.1	94.7	0.3	0.91	0.77	0.89	3.08	3.6	0.003	0.60	0.0	0.04	13.89	0.00	2.090	6.66	2.06	5.3	94.6	0.1	0.91	0.35	0.76	0.88	2.73	12687	1608	13	0	24	0	0	logfile

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