Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7YKS	33896	2024-02-17	2022-07-23	3.0	3.20	3.06	4.7	0.008	1.00	0.0	0.06	10.27	0.01	2.291	4.01	0.00	6.7	93.1	0.2	-6.58	0.17	0.11	-0.18	3.2	0.004	0.93	2.0	0.04	16.76	0.01	2.171	10.38	1.00	4.8	95.2	0.0	-0.98	2.24	0.59	0.80	1.81	18984	2364	4	0	0	0	0	logfile
✔	7YKR	33895	2024-02-21	2022-07-23	3.2	3.70	3.34	4.7	0.008	1.02	8.0	0.06	10.92	0.01	2.215	4.01	0.83	9.3	90.7	0.0	-6.34	0.34	0.19	0.00	3.6	0.003	0.71	0.0	0.04	15.79	0.00	2.204	9.30	1.34	7.2	92.8	0.0	-0.59	2.74	0.62	0.76	1.77	31924	4140	4	0	0	0	0	logfile
✔	8DSP	27657	2024-02-13	2022-07-22	3.3	3.95	3.29	3.7	0.005	0.79	0.0	0.05	12.78	0.00	2.147	13.79	0.47	8.9	90.5	0.6	-1.65	0.69	0.65	0.69	3.7	0.003	0.61	0.0	0.04	15.10	0.00	1.907	15.72	0.94	8.7	90.7	0.6	-1.15	2.24	0.74	0.80	2.64	7745	490	3	0	0	0	3848	logfile
✔	7YKJ	33892	2024-02-13	2022-07-22	3.5	3.71	3.62	3.7	0.013	1.78	1.0	0.09	15.54	0.04	1.761	8.58	2.98	6.6	92.2	1.1	-2.51	0.51	0.72	1.70	3.7	0.003	0.70	0.0	0.05	15.65	0.01	2.093	12.12	5.37	5.5	94.0	0.5	-1.13	1.24	0.52	0.75	1.39	4811	626	4	0	0	0	0	logfile
✔	7YK8	33890	2024-02-13	2022-07-22	2.8	2.62	1.74	2.8	0.005	0.66	0.0	0.06	11.56	0.00	2.465	18.20	0.00	8.5	91.5	0.0	-3.55	0.46	0.82	1.92	2.8	0.003	0.66	0.0	0.05	16.81	0.00	2.247	7.69	7.37	8.5	91.5	0.0	-2.87	1.14	0.44	0.82	1.95	3108	450	12	0	0	0	0	logfile
✔	7YKD	33891	2024-02-14	2022-07-22	2.81	3.29	2.94	3.2	0.009	0.86	0.0	0.06	14.19	0.00	2.118	15.46	0.10	5.0	95.0	0.0	-0.18	0.70	0.83	4.27	3.2	0.003	0.64	0.0	0.04	15.02	0.00	2.181	9.55	2.29	3.7	96.3	0.0	0.75	0.92	0.67	0.84	3.24	8965	1133	7	0	5	0	0	logfile
✔	8DRQ	27681	2024-02-13	2022-07-21	4.16	4.28	4.60	4.1	0.004	0.89	0.0	0.05	15.60	0.01	2.283	15.85	0.00	5.9	94.1	0.0	-3.30	0.39	0.56	—	4.1	0.004	0.83	0.0	0.05	13.36	0.01	2.086	24.08	0.00	7.7	92.3	0.0	-2.83	1.99	0.42	0.56	—	3321	407	1	0	0	0	0	logfile
✔	8DRP	27680	2024-02-16	2022-07-21	2.84	2.96	2.83	2.9	0.004	0.71	0.0	0.04	17.64	0.00	2.282	11.96	3.22	2.2	97.8	0.0	1.89	0.65	0.78	2.65	2.9	0.003	0.59	0.0	0.04	17.17	0.00	2.266	10.34	3.56	2.0	97.8	0.2	1.74	0.41	0.66	0.81	2.65	15816	2048	8	0	12	0	0	logfile
✔	8DSA	27687	2024-02-15	2022-07-21	3.48	3.75	3.47	3.7	0.005	0.81	0.0	0.05	17.32	0.01	2.201	7.06	0.53	2.6	97.4	0.0	0.06	0.59	0.63	1.34	3.7	0.004	0.68	0.0	0.04	17.05	0.00	2.048	13.45	4.79	3.3	96.7	0.0	1.20	2.75	0.61	0.69	0.77	12039	1418	14	0	4	6	0	logfile
✔	8DS6	27684	2024-02-14	2022-07-21	4.9	4.18	4.54	3.7	0.012	1.43	0.0	0.06	10.65	0.01	2.494	0.39	0.00	1.4	98.6	0.0	1.06	0.85	0.67	—	3.7	0.003	0.57	0.0	0.04	11.45	0.01	2.212	9.28	0.00	2.3	97.7	0.0	1.68	1.09	0.85	0.63	—	10135	669	2	0	0	0	5107	logfile
✘	8DRK	27677	2024-02-16	2022-07-21	2.95	3.45	3.10	3.4	0.006	0.84	0.0	0.05	19.55	0.01	2.212	5.78	0.28	2.0	98.0	0.0	0.83	0.62	0.81	1.98	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16443	1901	18	0	21	6	0	logfile
✔	7YK1	33883	2024-02-16	2022-07-21	3.08	2.99	2.80	3.0	0.006	0.69	0.0	0.05	20.08	0.00	2.029	5.53	0.26	5.2	94.0	0.8	-1.48	0.75	0.89	3.82	3.0	0.003	0.66	0.0	0.05	19.18	0.00	1.937	5.05	2.20	5.5	93.8	0.7	-0.26	1.08	0.72	0.88	3.64	14364	1836	12	0	24	0	0	logfile
✔	8DRN	27678	2024-02-13	2022-07-21	4.12	4.23	4.09	4.2	0.004	0.98	0.0	0.05	15.67	0.01	2.264	18.85	0.26	6.6	93.4	0.0	-2.70	0.54	0.68	—	4.1	0.003	0.77	0.0	0.05	13.56	0.00	2.180	23.60	0.00	7.6	92.4	0.0	-1.85	1.54	0.59	0.73	—	6578	811	2	0	0	0	0	logfile
✔	8DS9	27686	2024-02-15	2022-07-21	3.17	3.61	3.26	3.6	0.005	0.81	0.0	0.05	17.32	0.01	2.201	7.01	0.53	2.6	97.4	0.0	0.06	0.57	0.61	1.30	3.6	0.004	0.58	0.0	0.04	16.99	0.00	2.060	10.87	4.64	2.9	97.1	0.0	1.27	1.91	0.56	0.68	0.97	12039	1418	14	0	4	6	0	logfile
✔	7YK5	33887	2024-02-23	2022-07-21	2.0	1.66	—	1.9	0.014	1.49	0.0	0.09	17.33	0.00	2.157	4.91	7.75	4.0	96.0	0.0	-2.45	0.38	0.48	6.60	1.9	0.005	0.77	0.0	0.05	16.41	0.01	2.346	1.79	1.20	2.7	97.3	0.0	-0.03	1.29	0.81	0.84	6.70	39948	5064	36	0	8	0	0	logfile
✔	8DRo	27679	2024-02-13	2022-07-21	4.06	4.13	4.38	4.1	0.004	0.96	0.0	0.05	15.27	0.01	2.265	14.83	0.40	7.3	92.7	0.0	-3.39	0.46	0.53	—	4.1	0.003	0.79	0.0	0.04	13.73	0.01	2.171	19.16	0.00	9.0	91.0	0.0	-2.44	2.62	0.45	0.51	—	6642	814	2	0	0	0	0	logfile
✔	8DS3	27682	2024-02-22	2022-07-21	3.07	2.62	3.25	3.2	0.005	0.90	0.0	0.05	17.58	0.01	2.212	11.43	0.28	4.5	95.5	0.0	-1.35	0.71	0.70	1.32	2.0	0.007	0.69	0.0	0.04	16.44	0.00	2.088	14.97	2.13	4.9	95.1	0.0	-0.62	0.49	0.74	0.80	1.29	32601	3888	18	0	21	6	0	logfile
✔	7YK2	33884	2024-02-13	2022-07-21	2.8	2.60	2.36	2.8	0.005	0.82	0.0	0.05	11.38	0.00	2.424	12.82	0.00	11.5	88.5	0.0	-3.89	0.42	0.78	3.09	2.8	0.002	0.58	0.0	0.05	14.70	0.00	2.444	5.39	2.96	5.7	94.3	0.0	-2.63	0.46	0.42	0.79	3.19	2628	378	6	0	0	0	0	logfile
✔	7YK6	33888	2024-02-14	2022-07-21	3.03	2.39	3.06	2.1	0.006	0.73	0.0	0.05	14.22	0.01	2.130	11.24	0.21	5.5	94.4	0.1	-0.18	0.73	0.74	2.51	2.1	0.002	0.57	0.0	0.04	16.31	0.00	2.125	9.91	2.45	4.5	95.5	0.0	0.34	1.12	0.73	0.75	2.04	8736	1118	6	0	1	0	0	logfile
✔	8AGT	15423	2024-02-29	2022-07-20	2.6	3.22	2.67	2.6	0.006	0.90	6.0	0.05	21.62	0.01	1.011	4.89	1.63	3.6	96.3	0.1	0.14	0.92	0.88	3.20	2.6	0.003	0.60	1.0	0.04	21.63	0.00	1.973	9.10	1.76	4.1	95.8	0.0	0.64	1.16	0.93	0.91	3.03	151341	9428	69	3642	37	0	0	logfile

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