Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7YJN	33875	2024-02-14	2022-07-20	3.4	3.63	3.43	3.6	0.019	1.74	21.0	0.13	15.89	0.01	1.776	26.04	8.37	11.1	87.0	1.9	-2.39	0.70	0.83	2.69	3.6	0.003	0.66	0.0	0.04	16.17	0.00	2.200	7.15	3.48	5.7	94.1	0.2	0.22	0.51	0.69	0.84	2.05	8528	1095	6	0	1	0	0	logfile
✔	8DQX	27663	2024-02-24	2022-07-20	2.1	2.94	2.16	2.7	0.008	0.68	0.0	0.04	17.32	0.00	1.878	4.91	1.26	2.0	98.0	0.0	1.11	0.79	0.75	4.56	2.7	0.003	0.52	0.0	0.04	17.06	0.00	1.757	4.25	0.95	1.4	98.6	0.0	1.94	0.67	0.80	0.88	4.42	43173	2598	26	27	8	866	21143	logfile
✔	8DRE	27676	2024-02-19	2022-07-20	3.18	2.53	3.25	2.0	0.006	0.80	0.0	0.05	19.10	0.01	2.216	8.37	0.25	3.5	96.5	0.0	-0.71	0.73	0.76	1.15	2.0	0.003	0.53	0.0	0.04	17.00	0.00	2.154	11.15	2.42	3.1	96.9	0.0	0.27	1.13	0.73	0.78	1.33	25940	3069	18	0	20	6	0	logfile
✔	8DR7	27673	2024-02-24	2022-07-20	2.7	3.41	2.84	3.2	0.008	0.60	0.0	0.04	17.41	0.00	1.945	4.68	0.91	1.4	98.6	0.0	1.90	0.85	0.85	2.57	3.2	0.004	0.54	0.0	0.04	17.49	0.00	1.923	5.36	1.34	2.4	97.6	0.0	1.36	1.06	0.79	0.85	2.97	43060	2600	16	50	8	0	21405	logfile
✔	8AGX	15427	2024-02-28	2022-07-20	2.4	3.19	2.52	2.5	0.006	0.93	5.0	0.05	21.77	0.01	1.296	4.14	2.04	3.7	96.2	0.1	-0.44	0.92	0.89	3.34	2.6	0.004	0.63	1.0	0.04	21.68	0.00	1.910	8.64	2.02	4.4	95.6	0.0	0.51	0.46	0.94	0.93	3.42	149706	9204	68	3640	41	0	0	logfile
✔	8AGV	15425	2024-02-29	2022-07-20	2.6	3.24	2.71	2.7	0.006	0.91	8.0	0.06	21.64	0.01	1.419	4.95	1.56	3.7	96.2	0.1	0.07	0.92	0.89	2.99	2.7	0.005	0.64	0.0	0.04	21.66	0.00	1.874	9.29	2.45	4.2	95.8	0.0	0.54	1.19	0.94	0.92	3.18	151349	9427	69	3642	38	0	0	logfile
✔	8AGT	15423	2024-02-29	2022-07-20	2.6	3.22	2.67	2.6	0.006	0.90	6.0	0.05	21.62	0.01	1.011	4.89	1.63	3.6	96.3	0.1	0.14	0.92	0.88	3.20	2.6	0.003	0.60	1.0	0.04	21.63	0.00	1.973	9.10	1.76	4.1	95.8	0.0	0.64	1.16	0.93	0.91	3.03	151341	9428	69	3642	37	0	0	logfile
✘	8AGZ	15428	2024-02-29	2022-07-20	2.6	3.24	2.62	2.6	0.006	0.91	7.0	0.05	21.69	0.01	1.172	5.43	1.49	3.7	96.2	0.1	-0.39	0.92	0.89	3.23	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	151339	9427	69	3640	41	0	0	logfile
✔	7YJM	33874	2024-02-14	2022-07-20	3.2	3.29	3.09	3.2	0.007	1.08	0.0	0.06	19.61	0.00	1.946	17.47	17.31	9.4	89.4	1.2	-4.69	0.74	0.88	2.07	3.2	0.002	0.61	0.0	0.04	17.30	0.00	2.208	5.28	3.21	4.2	95.7	0.2	-0.92	0.42	0.73	0.89	2.48	8895	1120	7	0	2	0	0	logfile
✔	8AGW	15426	2024-02-28	2022-07-20	2.6	3.24	2.70	2.7	0.006	0.90	7.0	0.06	21.72	0.01	1.371	4.13	0.98	3.8	96.1	0.1	-0.36	0.92	0.89	3.19	2.6	0.005	0.61	0.0	0.04	21.64	0.00	1.893	8.41	2.31	4.5	95.5	0.0	0.63	0.46	0.94	0.92	3.22	150269	9285	68	3642	38	0	0	logfile
✔	8DQW	27662	2024-02-24	2022-07-20	2.1	2.86	2.16	2.6	0.007	0.55	0.0	0.04	18.05	0.00	1.761	3.31	0.44	1.6	98.4	0.0	2.35	0.77	0.72	3.64	2.7	0.003	0.53	0.0	0.04	17.77	0.00	1.722	3.85	1.11	1.7	98.3	0.0	2.19	2.60	0.82	0.88	3.89	46565	2802	25	36	8	429	22936	logfile
✔	8DR5	27671	2024-02-24	2022-07-20	2.76	3.39	2.90	3.2	0.007	0.56	0.0	0.04	17.22	0.00	1.939	4.82	0.82	2.0	98.0	0.0	1.42	0.84	0.84	2.91	3.2	0.003	0.54	0.0	0.04	17.52	0.00	1.880	5.63	1.15	2.6	97.4	0.0	1.38	1.39	0.79	0.85	2.87	45375	2749	17	50	8	0	22595	logfile
✔	8DR6	27672	2024-02-24	2022-07-20	2.39	3.20	2.47	3.0	0.002	0.52	0.0	0.04	17.90	0.00	1.996	3.30	0.95	1.3	98.7	0.0	2.01	0.85	0.85	3.82	3.0	0.003	0.53	0.0	0.04	18.00	0.00	1.779	3.80	1.17	1.7	98.3	0.0	1.94	0.58	0.77	0.86	3.76	43630	2608	20	63	9	12	21632	logfile
✔	8DR1	27668	2024-02-24	2022-07-20	2.14	2.91	2.21	2.7	0.008	0.57	0.0	0.04	18.10	0.00	1.946	2.66	0.74	1.4	98.6	0.0	1.79	0.80	0.77	4.33	2.7	0.004	0.54	0.0	0.04	17.98	0.00	1.692	3.21	1.25	1.5	98.5	0.0	1.82	0.66	0.78	0.88	4.67	43630	2608	21	64	8	12	21631	logfile
✔	8DR0	27667	2024-02-24	2022-07-20	2.42	3.22	2.49	3.0	0.008	0.56	0.0	0.04	17.94	0.00	2.058	3.70	1.04	1.4	98.6	0.0	2.09	0.87	0.85	3.77	3.0	0.003	0.52	0.0	0.04	17.94	0.00	1.919	4.56	0.91	1.9	98.1	0.0	1.83	1.78	0.80	0.86	3.73	42882	2608	15	41	8	0	21368	logfile
✔	8DR4	27670	2024-02-24	2022-07-20	2.45	3.17	2.59	3.0	0.008	0.56	0.0	0.04	18.58	0.00	1.929	2.78	0.91	1.9	98.1	0.0	1.85	0.84	0.85	3.40	3.0	0.003	0.52	0.0	0.04	18.24	0.00	1.905	3.65	1.39	2.2	97.8	0.0	1.70	0.66	0.76	0.86	3.51	43471	2600	17	63	8	0	21549	logfile
✔	8DQZ	27666	2024-02-24	2022-07-20	2.92	3.56	3.08	3.3	0.008	0.60	0.0	0.04	16.92	0.00	1.869	5.54	0.30	2.1	97.9	0.0	1.51	0.84	0.85	2.75	3.4	0.003	0.54	0.0	0.04	17.13	0.00	1.810	5.86	0.87	3.1	96.9	0.0	1.35	1.15	0.80	0.86	2.69	42754	2599	15	41	8	0	21302	logfile
✔	8DR8	27674	2024-02-16	2022-07-20	3.04	3.55	3.20	3.5	0.007	0.82	0.0	0.05	20.92	0.00	2.216	6.05	0.17	2.2	97.8	0.0	0.91	0.61	0.79	1.54	3.5	0.003	0.49	0.0	0.04	16.80	0.00	2.205	8.80	2.81	2.2	97.8	0.0	2.07	0.35	0.59	0.79	1.53	16270	1878	18	0	20	6	0	logfile
✔	8DR3	27669	2024-02-24	2022-07-20	2.2	2.97	2.27	2.7	0.007	0.54	0.0	0.04	18.83	0.00	1.910	2.96	1.15	1.5	98.5	0.0	2.43	0.83	0.81	3.80	2.8	0.004	0.56	0.0	0.04	18.44	0.00	1.675	3.65	1.40	2.0	98.0	0.0	2.01	1.32	0.79	0.89	4.36	45954	2758	21	64	8	12	22825	logfile
✔	7YJK	33873	2024-02-17	2022-07-20	3.2	3.33	3.18	3.3	0.008	0.92	0.0	0.05	14.35	0.01	2.223	8.05	0.21	7.1	92.1	0.7	-3.10	0.72	0.86	3.03	3.3	0.002	0.56	0.0	0.04	15.46	0.00	2.196	5.13	0.84	4.0	95.8	0.2	-0.72	1.57	0.70	0.86	2.47	17658	2236	10	0	4	0	0	logfile

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