Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8AGZ	15428	2024-02-29	2022-07-20	2.6	3.24	2.62	2.6	0.006	0.91	7.0	0.05	21.69	0.01	1.172	5.43	1.49	3.7	96.2	0.1	-0.39	0.92	0.89	3.23	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	151339	9427	69	3640	41	0	0	logfile
✔	8DQL	27656	2024-02-13	2022-07-19	3.0	2.95	2.90	2.9	0.002	0.47	0.0	0.04	14.89	0.00	2.309	5.10	0.00	3.6	96.4	0.0	2.01	0.74	0.81	1.75	2.9	0.003	0.58	0.0	0.04	16.65	0.00	2.302	5.25	2.74	4.5	95.5	0.0	1.70	3.33	0.75	0.84	1.98	6402	771	3	0	0	0	0	logfile
✔	8DQK	27655	2024-02-13	2022-07-19	4.0	4.35	4.38	3.9	0.003	0.72	0.0	0.05	12.56	0.01	2.134	12.28	0.00	2.6	97.2	0.1	0.14	0.55	0.56	—	4.1	0.004	0.69	0.0	0.04	15.44	0.00	2.107	19.61	3.97	4.4	95.4	0.1	0.29	1.71	0.60	0.70	—	5891	733	1	0	0	0	0	logfile
✔	8AG3	15414	2024-02-13	2022-07-19	3.47	2.17	3.26	2.0	0.002	0.60	0.0	0.04	17.16	0.01	2.143	8.90	0.00	6.6	93.4	0.0	-1.45	0.61	0.73	3.03	1.8	0.003	0.63	0.0	0.05	17.40	0.01	2.085	9.47	4.22	8.2	91.8	0.0	-1.12	0.32	0.62	0.77	2.98	2632	322	2	0	0	0	0	logfile
✘	8AG4	15415	2024-02-15	2022-07-19	2.46	2.04	2.48	1.7	0.003	0.49	0.0	0.04	13.59	0.00	2.170	5.34	0.00	3.9	96.1	0.0	0.77	0.82	0.83	4.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11155	1384	4	0	0	0	0	logfile
✔	8AG5	15416	2024-02-16	2022-07-19	3.47	2.11	—	1.9	0.003	0.49	0.0	0.04	17.82	0.00	2.194	6.46	0.26	3.8	96.2	0.0	0.35	0.75	0.75	3.20	1.9	0.002	0.49	0.0	0.04	17.78	0.00	2.206	6.76	2.55	3.8	96.2	0.0	0.65	0.24	0.76	0.78	2.88	13762	1703	4	0	0	0	0	logfile
✔	7YJ4	33871	2024-02-14	2022-07-19	3.19	3.39	3.21	3.4	0.004	0.67	0.0	0.05	14.73	0.01	2.175	9.63	1.55	5.5	94.4	0.1	-0.72	0.60	0.73	1.95	3.4	0.003	0.65	0.0	0.04	16.06	0.00	2.141	11.36	2.06	5.1	94.9	0.0	-0.35	0.67	0.63	0.79	2.19	8985	1154	7	0	0	0	0	logfile
✔	7YJ2	33869	2024-02-14	2022-07-19	2.9	3.04	2.91	3.0	0.010	1.03	0.0	0.07	17.03	0.01	2.119	9.08	8.32	7.1	92.3	0.6	-3.30	0.69	0.86	3.49	3.0	0.003	0.61	0.0	0.04	16.86	0.00	2.204	3.83	2.98	5.0	94.9	0.1	-0.76	0.41	0.68	0.87	2.62	9124	1154	6	0	1	0	0	logfile
✔	7YJ1	33868	2024-02-14	2022-07-19	3.1	3.27	3.03	3.2	0.006	0.84	0.0	0.05	18.00	0.00	1.486	11.68	9.53	7.4	91.9	0.7	-3.00	0.72	0.88	2.84	3.2	0.002	0.57	0.0	0.04	16.93	0.00	2.176	4.42	2.05	4.2	95.8	0.0	-0.46	0.34	0.70	0.88	2.24	9140	1154	6	0	1	0	0	logfile
✔	8DPZ	27644	2024-02-13	2022-07-18	3.38	3.59	2.04	3.5	0.004	0.77	0.0	0.05	13.01	0.01	2.363	1.84	0.00	3.6	96.4	0.0	-2.09	0.74	0.80	3.86	3.5	0.003	0.64	0.0	0.04	14.86	0.00	2.121	7.53	3.61	4.9	95.1	0.0	-1.38	1.14	0.75	0.83	3.55	3326	420	4	0	2	0	0	logfile
✔	8AFX	15411	2024-02-13	2022-07-18	4.8	5.07	4.58	5.0	0.005	0.90	0.0	0.05	16.08	0.01	2.159	17.10	1.05	6.1	93.9	0.0	-0.47	0.60	0.65	—	5.0	0.003	0.72	0.0	0.05	12.19	0.00	1.973	12.92	0.00	5.1	94.9	0.0	-0.84	0.59	0.74	0.80	—	2498	321	1	0	0	0	0	logfile
✔	7YiX	33865	2024-02-15	2022-07-18	2.96	3.52	3.10	3.4	0.003	0.51	0.0	0.04	13.44	0.00	2.001	3.35	0.00	3.6	96.4	0.0	-0.34	0.63	0.78	3.94	3.4	0.003	0.53	0.0	0.04	15.47	0.00	2.013	4.41	1.97	3.8	96.2	0.0	-0.28	0.29	0.64	0.80	3.68	11080	1416	10	0	20	0	0	logfile
✔	7YiU	33864	2024-02-14	2022-07-18	2.9	3.02	2.83	3.0	0.007	1.08	1.0	0.07	19.63	0.01	1.932	14.64	16.13	6.5	92.3	1.2	-4.83	0.69	0.87	2.38	3.0	0.002	0.62	0.0	0.04	17.70	0.00	2.138	4.77	2.13	4.7	95.3	0.0	-0.39	1.18	0.69	0.88	2.63	9285	1166	7	0	4	0	0	logfile
✔	8AFM	15402	2024-02-13	2022-07-18	4.8	3.13	4.72	3.9	0.004	0.74	0.0	0.04	15.27	0.00	2.153	18.43	0.25	8.2	91.8	0.0	-3.48	0.46	0.51	—	3.0	0.003	0.73	0.0	0.04	15.59	0.00	2.101	13.44	0.00	4.0	96.0	0.0	-0.87	2.12	0.48	0.56	—	7842	1010	12	0	0	0	0	logfile
✔	7YiY	33866	2024-02-14	2022-07-18	2.7	2.84	2.66	2.8	0.008	1.00	0.0	0.06	16.20	0.01	2.205	6.16	4.77	5.2	94.2	0.6	-1.48	0.71	0.87	3.70	2.8	0.003	0.61	0.0	0.05	16.67	0.01	2.221	3.13	2.03	4.0	96.0	0.0	0.69	1.58	0.71	0.88	2.95	9257	1164	7	0	2	0	0	logfile
✘	8DQ1	27646	2024-02-18	2022-07-18	4.1	3.85	3.29	3.9	0.011	1.10	3.0	0.06	19.21	0.01	2.082	14.69	0.87	5.7	94.3	0.0	-1.40	0.44	0.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17754	1075	8	36	2	0	8343	logfile
✘	8DQ0	27645	2024-02-18	2022-07-18	3.74	3.61	3.79	3.6	0.008	0.98	0.0	0.05	16.04	0.01	2.203	6.20	1.20	4.9	95.1	0.0	-1.54	0.53	0.72	2.38	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17129	1075	6	0	2	0	8445	logfile
✔	8AFH	15398	2024-02-15	2022-07-18	3.9	2.50	3.75	3.1	0.006	0.70	0.0	0.04	14.17	0.00	2.160	15.04	0.00	4.9	95.1	0.0	-1.29	0.61	0.62	1.09	2.1	0.003	0.62	0.0	0.04	17.25	0.00	2.184	11.52	3.87	3.6	96.4	0.0	1.69	1.60	0.63	0.66	0.51	13570	1760	20	0	0	0	0	logfile
✔	8AFL	15401	2024-02-13	2022-07-18	4.4	3.03	4.24	2.2	0.004	0.74	0.0	0.04	15.27	0.00	2.153	18.68	0.25	8.4	91.6	0.0	-3.48	0.59	0.59	—	2.1	0.004	0.73	0.0	0.04	15.42	0.00	2.158	16.25	0.00	6.5	93.5	0.0	-1.48	0.80	0.59	0.59	—	3921	505	6	0	0	0	0	logfile
✔	8DPS	27641	2024-02-15	2022-07-17	3.47	3.80	3.59	3.8	0.008	1.40	4.0	0.08	14.65	0.01	2.063	19.50	0.52	5.7	94.2	0.2	-0.57	0.68	0.72	1.72	3.8	0.003	0.75	0.0	0.04	15.28	0.00	2.140	12.66	2.78	3.5	96.5	0.0	0.14	0.49	0.69	0.74	1.18	10610	1324	12	0	14	0	0	logfile

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