Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8AFE	15395	2024-02-13	2022-07-17	3.3	2.35	3.31	2.0	0.006	0.70	0.0	0.04	14.17	0.00	2.161	14.08	0.00	4.9	95.1	0.0	-1.30	0.59	0.64	1.83	2.0	0.005	0.62	0.0	0.04	16.24	0.00	2.218	12.00	3.44	4.1	95.9	0.0	0.68	0.37	0.62	0.69	1.07	6785	880	10	0	0	0	0	logfile
✔	7YiM	33861	2024-02-13	2022-07-17	2.6	2.93	2.77	2.9	0.013	1.14	0.0	0.07	15.89	0.01	2.272	6.72	0.78	4.9	95.1	0.0	-4.17	0.67	0.68	1.25	2.9	0.003	0.63	0.0	0.04	17.66	0.00	2.234	8.89	1.55	2.9	97.1	0.0	1.30	1.24	0.64	0.66	1.37	4657	592	1	0	0	0	0	logfile
✔	8DPS	27641	2024-02-15	2022-07-17	3.47	3.80	3.59	3.8	0.008	1.40	4.0	0.08	14.65	0.01	2.063	19.50	0.52	5.7	94.2	0.2	-0.57	0.68	0.72	1.72	3.8	0.003	0.75	0.0	0.04	15.28	0.00	2.140	12.66	2.78	3.5	96.5	0.0	0.14	0.49	0.69	0.74	1.18	10610	1324	12	0	14	0	0	logfile
✔	7YiF	33857	2024-02-18	2022-07-16	3.5	3.75	3.52	3.7	0.002	0.58	0.0	0.04	14.02	0.00	2.259	6.69	0.00	7.5	92.4	0.2	-1.85	0.68	0.80	2.49	3.7	0.003	0.55	0.0	0.04	15.91	0.00	2.220	6.27	1.43	7.3	92.5	0.2	-0.88	0.37	0.67	0.84	2.40	21322	2640	8	0	6	4	0	logfile
✔	8AFA	15393	2024-02-14	2022-07-16	3.16	3.52	3.20	3.5	0.003	0.48	0.0	0.04	14.99	0.00	2.223	6.23	0.53	1.8	98.2	0.0	0.26	0.63	0.83	2.67	3.5	0.003	0.51	0.0	0.04	15.34	0.00	2.211	8.76	2.32	1.8	98.2	0.0	2.70	0.89	0.61	0.83	2.02	9008	1208	6	0	0	0	0	logfile
✔	7YiE	33856	2024-02-18	2022-07-16	3.4	3.73	3.51	3.7	0.003	0.55	0.0	0.04	14.09	0.00	2.239	6.57	0.00	6.8	92.7	0.5	-0.45	0.66	0.76	2.38	3.7	0.003	0.53	0.0	0.04	15.84	0.00	2.231	6.31	1.81	7.4	92.3	0.3	0.23	0.36	0.65	0.84	1.99	21326	2640	8	0	6	8	0	logfile
✔	7YiG	33858	2024-02-18	2022-07-16	3.6	3.86	3.62	3.8	0.003	0.57	0.0	0.04	14.21	0.00	2.152	7.15	0.00	7.8	91.9	0.3	-2.00	0.67	0.80	2.11	3.8	0.003	0.56	0.0	0.04	15.92	0.00	2.206	6.90	1.76	8.6	91.2	0.2	-1.00	0.38	0.68	0.80	2.17	21320	2640	8	0	4	4	0	logfile
✔	7YiH	33859	2024-02-18	2022-07-16	3.5	3.85	3.58	3.8	0.004	0.78	0.0	0.05	14.23	0.01	2.066	16.72	0.00	13.9	85.0	1.1	-2.65	0.61	0.68	1.55	3.8	0.003	0.70	0.0	0.04	16.33	0.00	2.048	14.31	2.06	13.0	86.0	0.9	-1.86	0.93	0.62	0.71	1.49	21321	2640	8	0	5	4	0	logfile
✔	7YiJ	33860	2024-02-18	2022-07-16	3.8	4.24	3.93	4.1	0.004	0.92	0.0	0.05	14.45	0.01	2.135	19.50	0.00	13.3	85.3	1.4	-2.71	0.57	0.71	1.54	4.1	0.006	0.91	0.0	0.05	17.42	0.01	2.189	21.04	2.94	16.5	82.6	0.9	-2.55	1.52	0.58	0.72	1.61	21313	2640	5	0	1	0	0	logfile
✔	7YiD	33855	2024-02-18	2022-07-16	3.4	3.71	3.49	3.7	0.003	0.56	0.0	0.04	13.96	0.00	2.216	7.32	0.00	6.6	93.1	0.3	-0.75	0.65	0.81	3.12	3.7	0.002	0.50	0.0	0.04	15.58	0.00	2.211	6.41	1.76	6.1	93.6	0.3	-0.05	0.28	0.66	0.84	2.51	21326	2640	8	0	6	8	0	logfile
✔	8DPi	27636	2024-02-14	2022-07-15	3.4	2.28	3.42	2.1	0.002	0.55	0.0	0.06	10.82	0.00	2.211	4.16	0.98	1.3	98.6	0.1	1.79	0.73	0.68	1.99	2.1	0.003	0.64	0.0	0.04	14.04	0.00	2.070	7.43	2.44	3.1	96.9	0.0	0.63	0.59	0.75	0.73	2.18	8150	1093	6	0	2	0	0	logfile
✔	8DPH	27635	2024-02-14	2022-07-15	3.2	2.17	3.15	2.0	0.005	0.59	0.0	0.05	10.99	0.00	2.162	2.82	0.73	1.4	98.6	0.0	1.66	0.76	0.73	2.48	2.0	0.005	0.68	0.0	0.05	15.46	0.00	2.178	6.08	3.79	3.8	96.2	0.0	0.65	1.06	0.78	0.78	2.45	8182	1093	6	0	3	0	0	logfile
✔	8DPL	27637	2024-02-18	2022-07-15	2.53	3.55	2.56	3.0	0.002	0.48	0.0	0.04	9.41	0.00	2.277	3.90	0.00	2.5	97.5	0.0	1.13	0.90	0.87	4.07	3.1	0.004	0.75	0.0	0.04	13.61	0.01	2.130	8.94	2.31	3.3	96.7	0.0	0.48	1.58	0.89	0.88	4.09	16872	2163	21	0	21	0	0	logfile
✔	8DPM	27638	2024-02-18	2022-07-15	3.0	3.51	2.99	3.3	0.002	0.50	0.0	0.04	10.75	0.00	2.221	6.59	0.62	2.7	97.3	0.0	0.12	0.81	0.80	3.81	3.2	0.004	0.73	0.0	0.04	14.38	0.00	2.181	12.34	2.58	4.0	96.0	0.0	-0.24	1.26	0.84	0.85	3.46	16992	2169	21	0	21	0	0	logfile
✔	7Yi9	33854	2024-02-13	2022-07-15	2.6	2.91	2.69	2.9	0.004	0.65	0.0	0.40	14.61	0.00	2.115	9.72	0.00	5.0	95.0	0.0	-0.81	0.63	0.75	3.34	2.9	0.003	0.57	0.0	0.04	17.61	0.00	2.121	9.82	2.95	4.0	96.0	0.0	-0.50	0.96	0.64	0.78	3.27	5226	634	5	0	1	0	0	logfile
✔	8DPG	27634	2024-02-14	2022-07-15	3.6	2.36	3.57	2.2	0.002	0.49	0.0	0.04	9.69	0.00	2.151	4.40	0.61	0.9	99.1	0.0	1.82	0.73	0.69	1.78	2.2	0.004	0.60	0.0	0.04	13.63	0.00	2.122	6.48	2.32	3.1	96.9	0.0	0.67	1.11	0.76	0.73	1.89	8162	1093	6	0	2	0	0	logfile
✔	8DPF	27633	2024-02-14	2022-07-15	2.84	2.18	2.90	2.0	0.004	0.77	0.0	0.07	11.10	0.00	2.093	3.46	0.12	1.8	98.2	0.0	1.40	0.78	0.77	4.38	2.0	0.003	0.63	0.0	0.04	14.66	0.00	2.169	4.53	1.59	2.7	97.3	0.0	0.66	1.01	0.80	0.80	3.07	8160	1093	6	0	2	0	0	logfile
✔	7Yi8	33853	2024-02-13	2022-07-15	2.7	2.97	2.76	2.9	0.003	0.61	0.0	0.04	14.73	0.00	2.179	9.92	0.00	4.0	96.0	0.0	-0.52	0.69	0.74	2.24	3.0	0.003	0.59	0.0	0.04	17.83	0.00	2.186	11.82	3.29	3.7	96.3	0.0	-0.86	0.95	0.69	0.78	1.92	5225	635	5	0	0	0	0	logfile
✔	7YHS	33837	2024-02-19	2022-07-14	3.37	2.19	3.33	1.9	0.005	0.91	0.0	0.05	20.46	0.01	2.129	6.19	7.08	8.0	92.0	0.1	-4.27	0.70	0.65	1.63	1.9	0.004	0.76	2.0	0.04	20.49	0.00	2.100	11.45	5.61	8.4	91.6	0.0	-1.38	0.40	0.72	0.68	1.15	24596	2949	13	109	0	0	0	logfile
✔	8DoU	27623	2024-02-15	2022-07-14	3.54	3.80	3.52	3.8	0.003	0.63	0.0	0.04	14.70	0.00	2.233	7.01	0.34	4.7	95.3	0.0	0.61	0.70	0.76	1.40	3.8	0.003	0.65	0.0	0.04	16.29	0.00	2.227	8.14	2.84	5.4	94.6	0.0	-0.21	0.57	0.74	0.81	1.69	10666	1300	6	0	2	0	0	logfile

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