Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DP1	27628	2024-02-19	2022-07-14	3.46	4.08	3.46	3.5	0.014	1.85	9.0	0.12	15.88	0.02	2.519	0.08	1.61	4.4	95.0	0.6	-0.92	0.84	0.83	3.01	3.5	0.004	0.65	0.0	0.04	14.12	0.00	2.119	7.54	0.97	3.2	96.8	0.0	-0.06	1.25	0.85	0.87	2.21	25000	3045	33	0	95	0	0	logfile
✔	8DP0	27627	2024-02-14	2022-07-14	2.96	3.56	—	3.4	0.002	0.50	0.0	0.04	13.31	0.00	2.213	5.91	0.00	2.5	97.5	0.0	1.09	0.77	0.70	0.99	3.4	0.003	0.58	0.0	0.04	15.77	0.00	2.139	6.59	1.74	2.8	97.2	0.0	1.20	0.97	0.83	0.87	2.05	8894	1104	2	0	0	0	0	logfile
✔	7Yi2	33849	2024-02-15	2022-07-14	3.4	2.75	3.37	2.7	0.003	0.59	0.0	0.04	18.25	0.01	2.062	9.71	0.23	6.9	93.1	0.0	-0.99	0.75	0.77	2.10	2.7	0.002	0.54	0.0	0.04	19.03	0.00	2.077	9.55	3.13	6.2	93.8	0.0	-0.07	0.31	0.75	0.76	1.80	12140	1397	9	33	5	0	0	logfile
✔	8DoW	27624	2024-02-19	2022-07-14	3.69	4.37	3.72	3.7	0.014	1.91	15.0	0.13	15.27	0.02	2.498	0.14	1.03	7.6	91.0	1.3	-1.25	0.84	0.82	2.02	3.6	0.002	0.66	0.0	0.04	14.37	0.00	2.121	8.77	0.85	5.3	94.4	0.3	-0.27	0.56	0.84	0.83	1.80	25053	3108	31	0	69	0	0	logfile
✔	7YHo	33832	2024-02-13	2022-07-14	3.3	3.49	3.34	3.3	0.005	0.74	1.0	0.07	23.57	0.00	2.273	11.12	8.78	4.0	96.0	0.0	0.44	0.74	0.72	1.30	3.3	0.005	0.65	0.0	0.04	23.78	0.00	2.197	13.57	4.70	4.9	95.1	0.0	-0.52	0.54	0.75	0.75	1.36	3923	361	4	49	1	0	0	logfile
✔	7YHP	33835	2024-02-13	2022-07-14	3.1	3.03	3.01	3.1	0.008	0.55	0.0	0.04	19.25	0.00	2.216	6.19	1.81	4.1	95.9	0.0	0.44	0.68	0.76	3.14	3.1	0.004	0.55	0.0	0.04	21.67	0.00	2.232	9.49	1.81	4.1	95.9	0.0	0.04	0.74	0.68	0.79	3.55	3815	374	4	38	1	0	0	logfile
✔	8AEX	15388	2024-02-13	2022-07-14	2.76	2.87	2.67	2.8	0.009	1.16	0.0	0.06	16.57	0.00	2.313	12.81	3.19	8.5	91.5	0.0	-3.01	0.49	0.85	5.31	2.8	0.008	0.87	0.0	0.06	17.79	0.00	2.269	11.67	4.68	10.0	90.0	0.0	-2.49	0.36	0.49	0.87	4.73	4665	680	10	0	0	0	0	logfile
✔	7YHS	33837	2024-02-19	2022-07-14	3.37	2.19	3.33	1.9	0.005	0.91	0.0	0.05	20.46	0.01	2.129	6.19	7.08	8.0	92.0	0.1	-4.27	0.70	0.65	1.63	1.9	0.004	0.76	2.0	0.04	20.49	0.00	2.100	11.45	5.61	8.4	91.6	0.0	-1.38	0.40	0.72	0.68	1.15	24596	2949	13	109	0	0	0	logfile
✔	8DP5	27630	2024-02-17	2022-07-14	3.1	3.61	3.19	3.5	0.013	1.78	2.0	0.09	12.28	0.02	2.317	0.79	0.00	1.1	98.9	0.0	-0.51	0.80	0.85	4.09	3.5	0.003	0.51	0.0	0.03	14.24	0.00	2.062	2.87	0.22	1.8	98.2	0.0	2.78	2.87	0.74	0.82	2.67	17772	1145	6	0	0	0	8908	logfile
✔	7Yi3	33850	2024-02-15	2022-07-14	3.3	2.58	3.25	3.1	0.003	0.52	0.0	0.04	16.30	0.01	2.014	7.86	0.16	6.1	93.9	0.0	-0.30	0.73	0.77	2.60	3.1	0.003	0.51	0.0	0.04	17.11	0.00	1.996	9.00	2.91	6.5	93.5	0.0	0.27	0.23	0.73	0.78	2.25	11425	1392	7	0	5	0	0	logfile
✔	7Yi0	33845	2024-02-15	2022-07-14	3.2	3.31	3.15	3.3	0.003	0.57	0.0	0.04	15.67	0.00	2.105	8.46	0.93	5.7	94.3	0.0	-0.27	0.62	0.62	1.43	3.3	0.002	0.57	0.0	0.04	17.42	0.00	2.110	9.85	2.39	5.4	94.6	0.0	0.81	2.09	0.68	0.75	1.64	13430	1638	9	0	7	0	0	logfile
✔	8DoU	27623	2024-02-15	2022-07-14	3.54	3.80	3.52	3.8	0.003	0.63	0.0	0.04	14.70	0.00	2.233	7.01	0.34	4.7	95.3	0.0	0.61	0.70	0.76	1.40	3.8	0.003	0.65	0.0	0.04	16.29	0.00	2.227	8.14	2.84	5.4	94.6	0.0	-0.21	0.57	0.74	0.81	1.69	10666	1300	6	0	2	0	0	logfile
✔	7Yi1	33848	2024-02-16	2022-07-14	2.8	2.41	2.78	2.6	0.003	0.57	0.0	0.03	26.98	0.00	2.155	7.30	0.37	1.9	98.1	0.0	0.11	0.81	0.84	2.94	2.6	0.003	0.58	0.0	0.04	27.73	0.00	2.182	7.41	1.98	2.4	97.6	0.0	1.57	0.17	0.81	0.86	2.63	13926	967	12	302	0	0	0	logfile
✔	8DoK	27596	2024-02-19	2022-07-13	3.2	3.37	3.24	3.4	0.006	0.92	7.0	0.07	17.80	0.01	2.136	12.34	0.71	3.8	96.1	0.2	-0.58	0.65	0.83	3.01	3.4	0.003	0.59	0.0	0.05	14.37	0.00	2.152	9.45	2.06	4.0	96.0	0.0	-0.30	0.90	0.67	0.85	2.52	25844	3091	46	0	122	0	0	logfile
✔	7YHK	33831	2024-02-16	2022-07-13	3.14	3.38	3.17	3.4	0.007	0.99	0.0	0.06	14.13	0.01	2.283	5.30	0.76	5.0	94.8	0.2	-3.95	0.54	0.74	4.42	3.4	0.005	0.85	0.0	0.04	15.47	0.01	1.967	8.00	2.16	3.6	96.3	0.1	-1.40	0.42	0.70	0.88	4.20	14502	1812	15	0	18	0	0	logfile
✔	7YH7	33822	2024-02-20	2022-07-13	3.3	3.70	3.30	3.4	0.003	0.51	0.0	0.04	13.55	0.00	2.190	4.90	0.03	4.2	95.8	0.0	0.00	0.73	0.69	2.39	3.5	0.004	0.57	0.0	0.04	14.49	0.00	2.136	7.60	1.43	5.0	95.0	0.0	-0.02	0.44	0.79	0.87	2.23	28318	3574	20	0	43	0	0	logfile
✔	7YH6	33820	2024-02-13	2022-07-12	3.4	3.90	3.35	3.7	0.005	0.64	0.0	0.05	13.19	0.00	2.161	8.14	0.00	7.1	92.7	0.2	-0.87	0.66	0.86	3.92	3.7	0.003	0.66	0.0	0.04	14.64	0.00	2.205	8.29	1.94	6.1	93.9	0.0	-0.81	0.30	0.68	0.87	2.95	3343	430	3	0	1	0	0	logfile
✔	8Do2	27588	2024-02-13	2022-07-12	2.95	3.24	2.95	3.2	0.005	1.14	0.0	0.04	15.15	0.00	2.254	7.21	0.22	1.7	98.3	0.0	2.17	0.58	0.80	2.71	3.2	0.004	0.79	0.0	0.04	17.09	0.00	2.233	7.68	1.33	2.3	97.7	0.0	2.34	0.33	0.59	0.83	2.17	4226	541	3	0	1	0	0	logfile
✔	8DNY	27584	2024-02-13	2022-07-12	2.85	3.15	2.84	3.1	0.009	0.68	0.0	0.04	13.55	0.01	2.287	8.04	0.00	2.2	97.8	0.0	2.03	0.61	0.81	3.14	3.1	0.002	0.43	0.0	0.04	15.34	0.00	2.103	22.32	1.09	3.3	96.7	0.0	3.04	1.12	0.62	0.84	2.66	4336	558	4	0	1	0	5	logfile
✘	8Do3	27589	2024-02-13	2022-07-12	3.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4185	534	3	0	1	0	0	logfile

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