Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8AE1	15378	2024-02-18	2022-07-12	3.25	3.42	3.19	3.3	0.002	0.47	0.0	0.04	12.79	0.00	2.165	3.58	0.00	2.7	97.3	0.0	-1.01	0.77	0.87	4.39	3.3	0.003	0.53	0.0	0.04	14.00	0.00	2.186	4.11	1.14	3.2	96.8	0.0	-0.31	0.27	0.77	0.88	3.64	21504	2859	6	0	18	0	0	logfile
✘	8Do3	27589	2024-02-13	2022-07-12	3.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4185	534	3	0	1	0	0	logfile
✔	8Do2	27588	2024-02-13	2022-07-12	2.95	3.24	2.95	3.2	0.005	1.14	0.0	0.04	15.15	0.00	2.254	7.21	0.22	1.7	98.3	0.0	2.17	0.58	0.80	2.71	3.2	0.004	0.79	0.0	0.04	17.09	0.00	2.233	7.68	1.33	2.3	97.7	0.0	2.34	0.33	0.59	0.83	2.17	4226	541	3	0	1	0	0	logfile
✔	7YH6	33820	2024-02-13	2022-07-12	3.4	3.90	3.35	3.7	0.005	0.64	0.0	0.05	13.19	0.00	2.161	8.14	0.00	7.1	92.7	0.2	-0.87	0.66	0.86	3.92	3.7	0.003	0.66	0.0	0.04	14.64	0.00	2.205	8.29	1.94	6.1	93.9	0.0	-0.81	0.30	0.68	0.87	2.95	3343	430	3	0	1	0	0	logfile
✔	8DNV	27581	2024-02-13	2022-07-12	3.03	3.41	3.04	3.4	0.004	0.59	0.0	0.04	11.81	0.01	2.276	7.53	0.00	2.5	97.5	0.0	1.82	0.49	0.76	3.80	3.3	0.003	0.52	0.0	0.04	13.82	0.00	2.282	5.53	0.67	2.5	97.5	0.0	2.50	0.35	0.56	0.82	3.16	4157	535	3	0	0	0	0	logfile
✔	8DNY	27584	2024-02-13	2022-07-12	2.85	3.15	2.84	3.1	0.009	0.68	0.0	0.04	13.55	0.01	2.287	8.04	0.00	2.2	97.8	0.0	2.03	0.61	0.81	3.14	3.1	0.002	0.43	0.0	0.04	15.34	0.00	2.103	22.32	1.09	3.3	96.7	0.0	3.04	1.12	0.62	0.84	2.66	4336	558	4	0	1	0	5	logfile
✔	8DNM	27574	2024-02-16	2022-07-11	2.76	3.58	2.88	3.4	0.006	0.85	4.0	0.05	12.93	0.01	2.217	8.35	0.86	3.6	96.4	0.0	-1.12	0.83	0.80	3.99	3.4	0.004	0.57	0.0	0.04	14.76	0.00	2.230	6.43	0.80	2.9	97.1	0.0	0.69	0.56	0.83	0.87	3.28	14880	1932	4	0	0	0	0	logfile
✔	8DNH	27572	2024-02-15	2022-07-11	2.99	3.18	3.05	3.2	0.006	0.88	0.0	0.06	17.00	0.01	2.150	8.51	0.16	3.8	96.2	0.0	0.38	0.58	0.74	1.96	3.1	0.003	0.62	0.0	0.04	17.88	0.00	1.917	5.69	2.53	3.8	96.2	0.0	-0.03	1.13	0.68	0.83	2.10	11796	1496	8	0	12	0	0	logfile
✔	8DNA	27560	2024-02-16	2022-07-11	2.77	3.01	2.93	3.0	0.002	0.54	0.0	0.04	13.25	0.00	2.269	6.05	0.00	2.7	97.3	0.0	1.26	0.77	0.83	3.87	3.0	0.005	0.66	0.0	0.05	16.59	0.00	2.305	4.31	0.94	3.2	96.7	0.1	0.43	0.34	0.79	0.87	4.44	120420	15840	60	0	0	0	0	logfile
✔	7YGD	33816	2024-02-14	2022-07-11	3.41	4.13	3.42	3.3	0.002	0.49	0.0	0.03	24.63	0.00	2.100	14.25	0.00	0.0	0.0	0.0	—	0.90	0.81	—	3.3	0.007	0.75	0.0	0.04	25.30	0.01	1.824	32.50	0.00	0.0	0.0	0.0	—	1.50	0.91	0.88	—	8313	0	3	389	6	0	0	logfile
✔	8DN9	27558	2024-02-16	2022-07-11	2.9	3.17	3.07	3.2	0.003	0.65	0.0	0.04	14.88	0.00	2.218	6.34	0.45	4.1	95.9	0.0	-0.18	0.79	0.84	2.93	3.2	0.004	0.59	0.0	0.04	16.51	0.00	2.241	4.73	0.86	3.7	96.3	0.0	0.78	0.40	0.81	0.86	3.20	121080	15840	60	0	0	0	0	logfile
✔	8DNS	27579	2024-02-14	2022-07-11	3.22	3.05	3.26	3.1	0.006	1.46	0.0	0.09	11.07	0.01	2.425	5.60	3.33	2.4	97.6	0.0	-0.08	0.66	0.78	2.68	3.1	0.004	0.64	0.0	0.05	14.89	0.00	2.121	11.10	2.50	2.4	97.6	0.0	0.03	1.61	0.68	0.82	3.68	10092	1332	4	0	0	0	0	logfile
✔	8DNE	27564	2024-02-14	2022-07-11	3.5	3.77	3.53	3.8	0.004	0.65	0.0	0.04	14.83	0.00	1.785	9.38	0.00	4.9	95.1	0.0	-0.37	0.71	0.78	2.45	3.8	0.002	0.59	0.0	0.04	16.54	0.00	1.923	9.38	2.41	4.1	95.9	0.0	-0.20	1.22	0.69	0.77	1.46	10281	1251	6	0	4	0	0	logfile
✔	8DNo	27575	2024-02-16	2022-07-11	3.4	3.13	3.46	3.2	0.013	1.45	0.0	0.06	13.09	0.01	2.298	40.43	4.71	10.4	87.0	2.6	-4.22	0.63	0.74	1.54	3.2	0.004	0.72	0.0	0.05	16.83	0.00	2.131	15.50	4.09	4.2	95.8	0.0	-0.25	1.72	0.61	0.77	1.14	15160	1972	4	0	0	0	0	logfile
✔	7YG5	33808	2024-02-18	2022-07-11	3.0	3.31	3.22	3.3	0.015	1.09	2.0	0.07	17.21	0.01	2.195	16.07	0.56	10.9	88.8	0.3	-2.73	0.65	0.82	2.84	3.3	0.003	0.67	0.0	0.04	16.52	0.00	2.034	9.76	1.82	7.7	92.2	0.0	-0.54	1.13	0.62	0.81	2.46	20308	2436	8	0	37	0	0	logfile
✔	7YG7	33810	2024-02-23	2022-07-11	3.7	3.35	3.38	3.3	0.004	0.80	0.0	0.05	18.89	0.01	2.065	5.65	1.00	9.7	90.3	0.0	-2.57	0.71	0.73	1.83	3.3	0.003	0.62	0.0	0.04	18.55	0.00	2.092	8.98	3.40	11.7	88.3	0.0	-1.33	0.35	0.72	0.75	1.98	38035	4554	12	99	0	0	0	logfile
✔	7YG9	33812	2024-02-14	2022-07-11	2.68	3.47	2.76	2.8	0.005	0.51	0.0	0.03	24.67	0.00	1.804	13.88	0.00	0.0	0.0	0.0	—	0.86	0.81	—	2.8	0.006	0.62	0.0	0.04	24.38	0.00	1.873	17.58	0.00	0.0	0.0	0.0	—	0.39	0.92	0.92	—	8630	0	3	404	8	0	0	logfile
✔	8DNG	27566	2024-02-14	2022-07-11	3.0	3.19	3.01	3.2	0.004	0.61	0.0	0.05	15.29	0.00	2.029	11.14	2.15	3.2	96.8	0.0	0.46	0.53	0.67	2.03	3.2	0.005	0.96	1.0	0.05	16.28	0.00	1.743	8.81	3.35	2.6	97.4	0.0	-0.20	0.51	0.65	0.77	2.12	10218	1308	6	0	12	0	0	logfile
✔	7YGN	33817	2024-02-13	2022-07-11	3.0	3.26	3.08	3.3	0.004	0.83	0.0	0.05	15.54	0.02	1.892	3.34	0.00	2.7	97.3	0.0	0.11	0.69	0.77	2.97	3.3	0.006	0.72	0.0	0.05	16.75	0.01	1.859	6.11	1.49	4.0	96.0	0.0	-0.02	0.56	0.65	0.81	3.17	6133	739	3	9	2	0	0	logfile
✔	8DNF	27565	2024-02-15	2022-07-11	3.38	3.71	3.49	3.9	0.004	0.69	0.0	0.04	15.96	0.01	2.266	4.74	0.79	2.8	97.2	0.0	-0.81	0.56	0.81	1.68	3.9	0.004	0.64	0.0	0.04	16.56	0.00	1.877	4.70	2.93	4.8	95.2	0.0	-1.03	1.07	0.66	0.88	1.78	11812	1496	8	0	12	0	0	logfile

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