Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DNR	27577	2024-02-14	2022-07-11	2.8	3.02	2.87	3.0	0.003	0.52	0.0	0.05	15.27	0.00	1.992	5.07	1.47	2.4	97.5	0.1	0.42	0.66	0.84	3.88	3.0	0.002	0.46	0.0	0.04	15.39	0.00	2.190	4.05	2.08	2.6	97.4	0.0	1.01	0.22	0.68	0.85	3.72	10191	1314	6	0	12	0	0	logfile
✘	8ADW	15372	2024-02-13	2022-07-11	2.95	2.93	2.87	3.0	0.009	1.46	0.0	0.07	22.42	0.01	2.469	8.01	23.33	7.7	92.3	0.0	-4.02	0.51	0.80	4.38	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6920	990	10	0	0	0	0	logfile
✔	7YGC	33815	2024-02-14	2022-07-11	2.65	3.28	2.77	2.9	0.007	0.50	0.0	0.03	24.40	0.00	1.778	12.79	0.00	0.0	0.0	0.0	—	0.90	0.83	—	2.9	0.004	0.55	0.0	0.03	24.24	0.00	1.926	14.01	0.00	0.0	0.0	0.0	—	1.47	0.92	0.90	—	8690	0	3	407	6	0	0	logfile
✔	8ADU	15370	2024-02-13	2022-07-11	3.24	2.85	2.78	3.3	0.007	0.82	0.0	0.07	15.52	0.00	2.296	20.22	0.00	11.3	88.7	0.0	-4.91	0.52	0.82	3.23	3.3	0.003	0.65	0.0	0.05	16.69	0.00	2.208	14.61	6.38	11.5	88.5	0.0	-4.21	1.15	0.50	0.81	2.85	3460	495	5	0	0	0	0	logfile
✔	7YGN	33817	2024-02-13	2022-07-11	3.0	3.26	3.08	3.3	0.004	0.83	0.0	0.05	15.54	0.02	1.892	3.34	0.00	2.7	97.3	0.0	0.11	0.69	0.77	2.97	3.3	0.006	0.72	0.0	0.05	16.75	0.01	1.859	6.11	1.49	4.0	96.0	0.0	-0.02	0.56	0.65	0.81	3.17	6133	739	3	9	2	0	0	logfile
✔	8DNP	27576	2024-02-22	2022-07-11	2.69	2.56	2.88	2.7	0.010	1.16	0.0	0.08	12.98	0.00	1.768	10.47	1.31	2.3	97.7	0.0	0.44	0.76	0.82	4.00	2.7	0.004	0.90	4.0	0.04	19.08	0.00	1.858	12.18	2.15	1.6	98.4	0.0	5.72	0.66	0.73	0.83	3.82	33936	4128	48	0	24	0	0	logfile
✔	7YGD	33816	2024-02-14	2022-07-11	3.41	4.13	3.42	3.3	0.002	0.49	0.0	0.03	24.63	0.00	2.100	14.25	0.00	0.0	0.0	0.0	—	0.90	0.81	—	3.3	0.007	0.75	0.0	0.04	25.30	0.01	1.824	32.50	0.00	0.0	0.0	0.0	—	1.50	0.91	0.88	—	8313	0	3	389	6	0	0	logfile
✔	8DNE	27564	2024-02-14	2022-07-11	3.5	3.77	3.53	3.8	0.004	0.65	0.0	0.04	14.83	0.00	1.785	9.38	0.00	4.9	95.1	0.0	-0.37	0.71	0.78	2.45	3.8	0.002	0.59	0.0	0.04	16.54	0.00	1.923	9.38	2.41	4.1	95.9	0.0	-0.20	1.22	0.69	0.77	1.46	10281	1251	6	0	4	0	0	logfile
✔	8DNF	27565	2024-02-15	2022-07-11	3.38	3.71	3.49	3.9	0.004	0.69	0.0	0.04	15.96	0.01	2.266	4.74	0.79	2.8	97.2	0.0	-0.81	0.56	0.81	1.68	3.9	0.004	0.64	0.0	0.04	16.56	0.00	1.877	4.70	2.93	4.8	95.2	0.0	-1.03	1.07	0.66	0.88	1.78	11812	1496	8	0	12	0	0	logfile
✔	8DNM	27574	2024-02-16	2022-07-11	2.76	3.58	2.88	3.4	0.006	0.85	4.0	0.05	12.93	0.01	2.217	8.35	0.86	3.6	96.4	0.0	-1.12	0.83	0.80	3.99	3.4	0.004	0.57	0.0	0.04	14.76	0.00	2.230	6.43	0.80	2.9	97.1	0.0	0.69	0.56	0.83	0.87	3.28	14880	1932	4	0	0	0	0	logfile
✔	8DNo	27575	2024-02-16	2022-07-11	3.4	3.13	3.46	3.2	0.013	1.45	0.0	0.06	13.09	0.01	2.298	40.43	4.71	10.4	87.0	2.6	-4.22	0.63	0.74	1.54	3.2	0.004	0.72	0.0	0.05	16.83	0.00	2.131	15.50	4.09	4.2	95.8	0.0	-0.25	1.72	0.61	0.77	1.14	15160	1972	4	0	0	0	0	logfile
✔	7YGA	33813	2024-02-14	2022-07-11	2.35	3.08	2.44	2.8	0.008	0.62	0.0	0.04	24.74	0.01	1.779	10.87	0.00	0.0	0.0	0.0	—	0.89	0.87	—	2.8	0.007	0.61	0.0	0.04	24.28	0.00	1.825	12.17	0.00	0.0	0.0	0.0	—	0.84	0.89	0.88	—	8692	0	3	407	8	0	0	logfile
✔	8DNH	27572	2024-02-15	2022-07-11	2.99	3.18	3.05	3.2	0.006	0.88	0.0	0.06	17.00	0.01	2.150	8.51	0.16	3.8	96.2	0.0	0.38	0.58	0.74	1.96	3.1	0.003	0.62	0.0	0.04	17.88	0.00	1.917	5.69	2.53	3.8	96.2	0.0	-0.03	1.13	0.68	0.83	2.10	11796	1496	8	0	12	0	0	logfile
✔	8DN8	27556	2024-02-15	2022-07-10	3.7	4.03	3.79	4.0	0.003	0.61	0.0	0.04	13.76	0.00	2.157	9.82	0.00	6.0	94.0	0.0	-0.14	0.72	0.82	1.16	3.9	0.005	0.68	0.0	0.04	16.01	0.00	2.147	13.31	3.10	6.7	93.3	0.0	-0.18	0.58	0.72	0.83	1.08	10638	1300	6	0	2	0	0	logfile
✔	8DN2	27552	2024-02-16	2022-07-10	3.9	4.27	4.08	4.3	0.003	0.65	0.0	0.05	12.21	0.01	1.224	14.88	2.83	5.9	94.0	0.1	0.00	0.62	0.81	2.07	4.3	0.004	0.75	0.0	0.05	14.63	0.00	2.072	13.44	4.93	6.3	93.7	0.0	-0.05	0.97	0.61	0.82	1.74	14102	1696	12	0	40	0	0	logfile
✔	8DN5	27555	2024-02-16	2022-07-10	3.63	3.95	3.73	3.9	0.004	0.73	0.0	0.05	11.89	0.01	0.981	14.52	1.52	6.4	93.4	0.2	-0.87	0.67	0.83	2.14	3.9	0.003	0.65	0.0	0.04	14.68	0.00	2.176	9.33	3.38	6.0	93.8	0.2	-0.26	0.94	0.63	0.84	1.95	14081	1689	13	0	47	0	0	logfile
✔	8DN4	27554	2024-02-16	2022-07-10	4.1	4.45	4.26	4.3	0.004	0.72	0.0	0.05	13.55	0.00	1.353	18.54	0.40	5.8	93.9	0.3	-0.28	0.63	0.81	—	4.3	0.003	0.71	0.0	0.05	13.35	0.00	2.067	16.12	0.07	6.7	93.1	0.2	-0.67	0.52	0.63	0.81	—	13817	1682	10	0	20	0	0	logfile
✔	8DN3	27553	2024-02-16	2022-07-10	3.55	3.91	3.65	3.9	0.003	0.56	0.0	0.05	11.89	0.01	2.181	12.00	1.97	3.9	96.0	0.1	0.56	0.61	0.81	2.45	3.9	0.002	0.58	0.0	0.04	13.94	0.00	2.218	9.19	2.56	3.9	96.1	0.0	0.65	0.92	0.61	0.82	1.87	14315	1699	10	0	61	0	0	logfile
✔	7YFX	33800	2024-02-13	2022-07-09	3.4	3.66	3.48	3.6	0.006	0.79	0.0	0.05	17.05	0.01	1.969	7.14	0.45	2.4	97.6	0.0	-0.16	0.64	0.71	1.95	3.6	0.004	0.71	0.0	0.04	17.72	0.01	1.922	10.40	5.49	4.2	95.8	0.0	-0.38	0.68	0.68	0.78	2.04	6319	746	4	15	2	0	0	logfile
✔	7YG2	33805	2024-02-18	2022-07-09	3.32	3.64	3.42	3.6	0.003	0.61	0.0	0.05	15.08	0.01	2.196	6.69	0.00	3.5	96.5	0.0	-0.43	0.68	0.68	1.12	3.6	0.004	0.64	0.0	0.05	15.83	0.00	2.149	14.00	2.92	3.9	96.1	0.0	-0.37	0.68	0.71	0.76	1.39	20783	2630	23	0	12	0	0	logfile

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