Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7YFZ	33802	2024-02-17	2022-07-09	3.19	2.87	2.92	2.9	0.006	0.86	3.0	0.05	12.31	0.01	1.749	18.46	0.20	6.2	93.6	0.2	-0.92	0.62	0.79	3.45	2.9	0.003	0.57	1.0	0.04	14.53	0.00	1.866	12.22	0.94	4.8	95.2	0.1	0.60	1.25	0.61	0.81	3.04	128850	8814	42	0	0	0	61470	logfile
✔	7YG2	33805	2024-02-18	2022-07-09	3.32	3.64	3.42	3.6	0.003	0.61	0.0	0.05	15.08	0.01	2.196	6.69	0.00	3.5	96.5	0.0	-0.43	0.68	0.68	1.12	3.6	0.004	0.64	0.0	0.05	15.83	0.00	2.149	14.00	2.92	3.9	96.1	0.0	-0.37	0.68	0.71	0.76	1.39	20783	2630	23	0	12	0	0	logfile
✔	7YFX	33800	2024-02-13	2022-07-09	3.4	3.66	3.48	3.6	0.006	0.79	0.0	0.05	17.05	0.01	1.969	7.14	0.45	2.4	97.6	0.0	-0.16	0.64	0.71	1.95	3.6	0.004	0.71	0.0	0.04	17.72	0.01	1.922	10.40	5.49	4.2	95.8	0.0	-0.38	0.68	0.68	0.78	2.04	6319	746	4	15	2	0	0	logfile
✔	8DMY	27549	2024-02-15	2022-07-09	3.07	3.43	3.15	3.4	0.004	0.62	0.0	0.05	18.68	0.00	2.379	4.32	0.63	3.3	96.7	0.0	-1.24	0.57	0.84	2.69	3.4	0.003	0.63	0.0	0.05	17.36	0.00	2.231	2.74	2.85	4.3	95.7	0.0	-0.60	1.01	0.64	0.89	2.37	11796	1494	8	0	8	0	0	logfile
✔	7YG1	33804	2024-02-13	2022-07-09	3.77	4.01	3.78	3.9	0.005	1.15	1.0	0.06	14.00	0.01	2.230	42.79	1.33	14.0	86.0	0.0	-3.77	0.65	0.65	0.57	3.9	0.004	0.88	0.0	0.05	16.72	0.00	2.139	24.30	6.19	8.8	91.1	0.1	-1.76	1.43	0.67	0.68	0.13	6208	770	2	0	0	0	0	logfile
✔	8DLX	27519	2024-02-19	2022-07-08	2.45	3.38	2.62	2.7	0.005	0.83	0.0	0.06	13.11	0.01	2.279	3.50	0.08	2.2	97.8	0.0	-0.13	0.83	0.84	2.90	2.7	0.003	0.53	0.0	0.04	13.65	0.00	2.154	6.74	0.61	2.1	97.9	0.0	0.79	1.50	0.84	0.87	2.90	24293	3005	25	0	59	0	0	logfile
✔	8DLN	27507	2024-02-13	2022-07-08	3.04	3.75	3.10	3.4	0.005	0.86	0.0	0.06	13.35	0.01	2.303	2.81	0.29	1.8	98.2	0.0	-0.21	0.83	0.85	3.19	3.5	0.004	0.58	0.0	0.04	14.77	0.00	2.197	9.85	1.29	2.6	97.4	0.0	1.84	2.32	0.84	0.87	2.80	6553	797	4	0	7	0	0	logfile
✔	8DLT	27515	2024-02-19	2022-07-08	2.4	3.35	2.60	2.8	0.005	0.76	0.0	0.05	12.93	0.01	2.220	2.75	0.00	1.7	98.3	0.0	0.21	0.85	0.84	3.11	2.8	0.005	0.58	0.0	0.05	13.52	0.00	2.123	7.75	0.73	2.6	97.4	0.0	0.50	1.13	0.86	0.87	2.92	25245	3120	24	0	60	0	0	logfile
✔	8DM7	27529	2024-02-22	2022-07-08	2.49	3.10	2.62	2.7	0.005	0.84	0.0	0.06	13.32	0.01	2.296	3.28	0.58	1.6	98.4	0.0	0.44	0.79	0.78	2.55	2.8	0.006	0.70	0.0	0.05	15.07	0.00	2.140	11.41	1.77	3.0	97.0	0.0	0.16	1.33	0.80	0.83	2.72	35165	4330	28	0	61	0	0	logfile
✔	8DLJ	27503	2024-02-20	2022-07-08	2.91	3.82	3.10	3.1	0.005	0.84	0.0	0.06	12.96	0.01	2.282	3.47	0.13	1.7	98.3	0.0	0.38	0.84	0.82	2.35	3.1	0.005	0.63	0.0	0.04	14.07	0.00	2.061	10.63	0.52	2.5	97.5	0.0	0.75	1.56	0.85	0.85	2.56	28498	3508	26	0	64	0	0	logfile
✔	8DM5	27527	2024-02-22	2022-07-08	2.51	3.08	2.62	2.7	0.005	0.85	0.0	0.06	13.49	0.01	2.287	3.44	0.50	1.7	98.3	0.0	0.27	0.77	0.77	2.74	2.8	0.003	0.62	0.0	0.04	15.03	0.00	2.124	9.54	1.05	2.2	97.8	0.0	0.54	0.74	0.77	0.81	2.68	35279	4328	28	0	69	0	0	logfile
✔	8DLL	27505	2024-02-19	2022-07-08	2.56	3.44	2.79	2.8	0.005	0.78	0.0	0.06	12.79	0.01	2.279	3.13	0.00	2.8	97.2	0.0	-0.16	0.83	0.82	2.65	2.9	0.003	0.54	0.0	0.04	13.79	0.00	2.172	7.84	1.03	2.2	97.8	0.0	0.29	0.48	0.83	0.83	2.31	25095	3102	24	0	60	0	0	logfile
✔	8DMH	27538	2024-02-16	2022-07-08	3.19	3.54	3.17	3.2	0.003	0.60	0.0	0.04	16.83	0.00	2.149	9.05	0.00	4.3	95.7	0.0	-1.30	0.82	0.83	3.37	3.2	0.004	0.64	0.0	0.05	15.29	0.00	2.091	9.12	1.87	3.3	96.7	0.0	-0.54	4.01	0.83	0.84	2.69	14259	1725	36	0	45	0	0	logfile
✔	7YFN	33794	2024-02-20	2022-07-08	3.8	4.19	3.97	4.1	0.008	1.32	6.0	0.07	14.72	0.01	1.130	19.45	3.57	9.2	90.2	0.6	-2.63	0.73	0.80	1.46	4.1	0.004	0.76	0.0	0.04	16.76	0.00	2.113	11.70	3.19	8.3	91.6	0.1	-0.45	0.96	0.74	0.82	1.20	26397	3241	7	0	1	0	0	logfile
✔	8DMJ	27541	2024-02-15	2022-07-08	3.2	2.19	3.22	2.0	0.003	0.64	0.0	0.05	14.82	0.00	2.167	8.41	0.32	3.1	96.9	0.0	-0.37	0.75	0.76	3.13	2.1	0.003	0.61	0.0	0.05	15.96	0.00	2.128	8.95	2.80	2.8	97.2	0.0	-0.50	0.34	0.75	0.77	2.86	11030	1425	7	0	0	0	0	logfile
✔	8DMX	27548	2024-02-15	2022-07-08	3.37	3.66	3.43	3.6	0.003	0.59	0.0	0.04	13.99	0.00	2.105	6.01	0.00	2.3	97.7	0.0	0.17	0.55	0.79	2.06	3.6	0.002	0.54	0.0	0.04	15.94	0.00	2.005	3.73	1.83	2.5	97.5	0.0	-0.42	0.49	0.70	0.91	2.41	11748	1488	8	0	8	0	0	logfile
✔	8ADE	15361	2024-02-13	2022-07-08	2.78	2.65	2.55	2.7	0.012	1.58	0.0	0.11	9.64	0.00	2.213	3.08	0.00	3.4	96.6	0.0	-4.12	0.74	0.76	3.27	3.0	0.006	0.74	0.0	0.05	15.32	0.00	2.179	15.52	3.48	3.4	96.6	0.0	-2.46	0.73	0.77	0.83	4.61	5026	644	7	0	0	0	0	logfile
✔	8ADL	15364	2024-02-22	2022-07-08	2.95	2.79	3.17	2.1	0.003	0.59	0.0	0.05	13.45	0.01	2.230	4.28	0.00	3.4	96.6	0.0	-1.37	0.73	0.71	1.51	2.1	0.005	0.74	0.0	0.05	16.26	0.00	1.998	17.02	3.18	4.5	95.5	0.0	-0.69	0.87	0.76	0.75	1.61	98972	12238	30	0	28	0	0	logfile
✔	8DM6	27528	2024-02-13	2022-07-08	2.77	3.36	2.83	3.3	0.006	0.94	0.0	0.06	14.08	0.01	2.282	3.28	0.57	1.6	98.4	0.0	-0.08	0.77	0.83	2.73	3.2	0.004	0.65	0.0	0.04	16.20	0.00	2.208	9.52	2.15	2.1	97.9	0.0	1.45	1.59	0.76	0.83	2.84	6559	796	4	0	7	0	0	logfile
✔	8DMG	27536	2024-02-16	2022-07-08	4.4	5.39	4.50	4.6	0.029	2.33	20.0	0.12	16.95	0.01	0.312	28.72	6.80	6.0	92.3	1.7	-2.43	0.79	0.61	—	4.6	0.004	0.76	0.0	0.04	13.61	0.00	1.855	87.56	0.00	6.9	93.0	0.0	0.04	2.26	0.93	0.85	—	16844	2068	4	0	18	0	202	logfile

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