Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DMo	27545	2024-02-14	2022-07-08	3.9	5.15	3.90	4.1	0.003	0.63	0.0	0.04	14.36	0.00	2.239	9.02	0.00	3.0	96.9	0.1	1.78	0.74	0.67	0.80	4.2	0.003	0.71	0.0	0.04	15.91	0.00	2.171	13.45	1.43	3.1	96.9	0.1	2.00	0.61	0.85	0.86	0.78	8912	1150	2	0	0	0	0	logfile
✔	8DLV	27517	2024-02-13	2022-07-08	3.11	3.78	3.18	3.5	0.006	0.88	0.0	0.06	13.40	0.01	2.311	2.66	0.29	1.5	98.5	0.0	-0.25	0.82	0.85	2.77	3.5	0.003	0.57	0.0	0.04	14.95	0.00	2.220	8.21	1.29	2.8	97.2	0.0	1.73	0.62	0.83	0.87	2.35	6553	797	4	0	7	0	0	logfile
✘	7YFC	33785	2024-02-14	2022-07-08	3.0	3.40	3.05	3.4	0.005	0.66	0.0	0.04	18.01	0.00	2.198	5.98	0.09	2.5	97.5	0.0	1.05	0.65	0.82	3.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9882	1262	7	0	2	0	0	logfile
✔	8DM4	27526	2024-02-13	2022-07-08	2.45	2.88	2.45	2.8	0.006	0.90	0.0	0.06	13.36	0.01	2.259	4.06	0.23	4.1	95.9	0.0	-0.05	0.69	0.81	4.67	2.9	0.005	0.65	0.0	0.05	15.47	0.00	2.143	9.27	2.06	3.9	96.1	0.0	0.21	1.16	0.68	0.83	5.50	4018	497	5	0	6	0	0	logfile
✔	8DM0	27522	2024-02-13	2022-07-08	3.21	3.62	3.12	3.5	0.006	1.01	0.0	0.06	12.72	0.01	2.288	0.83	0.00	3.5	96.5	0.0	-1.78	0.59	0.80	3.29	3.6	0.003	0.60	0.0	0.04	14.73	0.00	2.238	7.85	3.75	2.9	97.1	0.0	-0.80	0.48	0.60	0.82	2.75	2480	314	3	0	1	0	0	logfile
✔	8DLY	27520	2024-02-13	2022-07-08	3.0	3.63	2.92	3.6	0.005	0.94	0.0	0.06	12.41	0.01	2.317	1.86	0.37	3.5	96.5	0.0	-1.46	0.63	0.81	3.36	3.6	0.004	0.73	0.0	0.05	15.92	0.00	2.294	13.42	5.24	2.9	97.1	0.0	-1.02	1.23	0.62	0.81	3.71	2483	314	3	0	1	0	0	logfile
✔	8DLK	27504	2024-02-13	2022-07-08	3.04	3.80	3.14	3.5	0.005	0.86	0.0	0.06	13.42	0.01	2.319	2.66	0.29	1.9	98.1	0.0	0.00	0.82	0.85	2.78	3.5	0.003	0.60	0.0	0.04	14.88	0.00	2.242	9.14	0.71	2.9	97.1	0.0	1.88	1.16	0.82	0.86	2.61	6554	797	4	0	7	0	0	logfile
✔	8ADN	15365	2024-02-25	2022-07-08	2.77	3.03	2.95	3.0	0.003	0.54	0.0	0.04	15.31	0.00	1.810	4.93	0.85	2.3	97.7	0.0	0.68	0.72	0.82	3.23	3.1	0.004	0.62	0.0	0.04	16.65	0.00	2.020	8.53	2.43	2.9	97.1	0.0	1.10	0.39	0.71	0.82	2.64	48318	6160	30	0	0	0	0	logfile
✔	8DLU	27516	2024-02-22	2022-07-08	3.14	3.96	3.32	3.4	0.005	0.80	0.0	0.06	13.06	0.01	2.288	2.95	0.08	1.8	98.2	0.0	0.19	0.82	0.79	1.97	3.4	0.003	0.60	0.0	0.04	14.19	0.00	2.159	9.71	1.08	2.4	97.6	0.0	0.83	1.22	0.82	0.78	1.77	35137	4312	28	0	72	0	0	logfile
✔	8DMJ	27541	2024-02-15	2022-07-08	3.2	2.19	3.22	2.0	0.003	0.64	0.0	0.05	14.82	0.00	2.167	8.41	0.32	3.1	96.9	0.0	-0.37	0.75	0.76	3.13	2.1	0.003	0.61	0.0	0.05	15.96	0.00	2.128	8.95	2.80	2.8	97.2	0.0	-0.50	0.34	0.75	0.77	2.86	11030	1425	7	0	0	0	0	logfile
✔	7YFL	33792	2024-02-17	2022-07-08	3.9	4.15	3.84	4.0	0.005	0.64	0.0	0.04	16.70	0.00	2.260	9.01	0.34	7.9	91.8	0.3	-0.49	0.72	0.77	1.05	4.0	0.003	0.60	0.0	0.04	16.39	0.00	2.248	8.75	3.23	7.6	92.3	0.1	-0.34	1.08	0.72	0.76	1.09	19968	2778	12	0	18	0	0	logfile
✔	8ADi	15363	2024-02-18	2022-07-08	3.4	3.67	3.39	3.7	0.003	0.52	0.0	0.04	14.25	0.01	1.491	4.93	0.08	4.4	95.6	0.0	-0.36	0.69	0.83	3.58	3.7	0.004	0.48	0.0	0.04	15.04	0.00	1.958	5.66	1.03	5.8	94.2	0.0	-0.35	0.26	0.67	0.85	3.37	23141	1505	6	0	0	0	11353	logfile
✔	8DMi	27539	2024-02-14	2022-07-08	3.26	4.04	3.27	3.5	0.004	0.81	0.0	0.06	14.47	0.01	2.117	8.99	0.00	5.9	94.1	0.0	-1.20	0.82	0.78	3.33	3.5	0.004	0.75	0.0	0.04	14.90	0.00	2.146	10.41	1.74	4.4	95.6	0.0	0.44	0.77	0.87	0.86	2.82	8259	951	30	0	42	0	0	logfile
✔	7YFi	33791	2024-02-19	2022-07-08	3.3	3.42	3.48	3.3	0.004	0.70	0.0	0.05	17.74	0.01	2.097	8.86	1.20	6.1	93.5	0.4	-0.21	0.84	0.77	1.68	3.0	0.003	0.59	0.0	0.04	16.82	0.00	2.127	8.70	2.33	6.9	92.9	0.2	0.27	1.34	0.87	0.83	2.23	24135	2980	19	0	45	0	0	logfile
✔	7YFG	33789	2024-02-18	2022-07-08	3.6	3.14	3.54	3.5	0.011	1.14	1.0	0.05	17.45	0.01	2.035	10.50	0.22	5.9	93.9	0.2	-0.95	0.77	0.79	2.58	3.5	0.003	0.59	0.0	0.04	16.55	0.00	2.175	7.59	3.16	6.1	93.8	0.1	-0.32	0.34	0.77	0.80	2.17	21215	2620	25	0	48	0	0	logfile
✔	8DMK	27542	2024-02-13	2022-07-08	3.7	4.20	3.87	4.0	0.003	0.57	0.0	0.04	14.55	0.00	1.425	12.24	0.00	6.4	93.6	0.0	-1.18	0.76	0.66	1.02	4.0	0.003	0.64	0.0	0.04	15.94	0.00	2.150	18.54	2.00	7.2	92.8	0.0	-1.55	1.08	0.79	0.74	1.29	7348	917	6	0	6	0	0	logfile
✔	8DMF	27535	2024-02-13	2022-07-08	4.0	4.71	3.73	4.1	0.003	0.64	0.0	0.05	14.28	0.00	1.977	13.96	0.00	5.0	95.0	0.0	-0.20	0.81	0.83	—	4.1	0.005	0.73	0.0	0.04	16.01	0.00	1.812	21.12	1.14	7.4	92.6	0.0	-0.69	0.44	0.82	0.84	—	5670	718	1	0	2	0	0	logfile
✔	8DLP	27509	2024-02-23	2022-07-08	2.64	3.56	2.96	2.7	0.005	0.79	0.0	0.05	13.24	0.01	2.276	2.95	0.12	2.2	97.8	0.0	-0.13	0.81	0.75	2.06	2.8	0.008	0.74	0.0	0.05	14.67	0.00	2.074	12.63	1.04	4.0	96.0	0.0	0.56	0.76	0.82	0.81	2.27	40095	4908	30	0	78	0	0	logfile
✔	8DM3	27525	2024-02-21	2022-07-08	2.37	2.98	2.50	2.6	0.005	0.84	0.0	0.05	12.92	0.01	2.245	4.10	0.24	2.4	97.6	0.0	-0.56	0.78	0.82	2.75	2.6	0.005	0.78	1.0	0.05	14.15	0.00	2.009	10.74	1.45	2.9	97.1	0.0	0.23	0.59	0.78	0.84	2.91	31185	3888	30	0	57	0	0	logfile
✔	7YFP	33796	2024-02-24	2022-07-08	4.0	4.63	4.11	4.3	0.007	0.93	7.0	0.06	14.32	0.01	1.562	27.18	1.60	11.3	88.5	0.2	-3.00	0.83	0.83	—	4.3	0.003	0.82	0.0	0.04	16.42	0.00	2.126	20.05	3.00	9.1	90.8	0.0	-1.20	0.87	0.82	0.82	—	40949	5028	7	0	1	0	0	logfile

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