Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ADN	15365	2024-02-25	2022-07-08	2.77	3.03	2.95	3.0	0.003	0.54	0.0	0.04	15.31	0.00	1.810	4.93	0.85	2.3	97.7	0.0	0.68	0.72	0.82	3.23	3.1	0.004	0.62	0.0	0.04	16.65	0.00	2.020	8.53	2.43	2.9	97.1	0.0	1.10	0.39	0.71	0.82	2.64	48318	6160	30	0	0	0	0	logfile
✔	8DLP	27509	2024-02-23	2022-07-08	2.64	3.56	2.96	2.7	0.005	0.79	0.0	0.05	13.24	0.01	2.276	2.95	0.12	2.2	97.8	0.0	-0.13	0.81	0.75	2.06	2.8	0.008	0.74	0.0	0.05	14.67	0.00	2.074	12.63	1.04	4.0	96.0	0.0	0.56	0.76	0.82	0.81	2.27	40095	4908	30	0	78	0	0	logfile
✔	8DLN	27507	2024-02-13	2022-07-08	3.04	3.75	3.10	3.4	0.005	0.86	0.0	0.06	13.35	0.01	2.303	2.81	0.29	1.8	98.2	0.0	-0.21	0.83	0.85	3.19	3.5	0.004	0.58	0.0	0.04	14.77	0.00	2.197	9.85	1.29	2.6	97.4	0.0	1.84	2.32	0.84	0.87	2.80	6553	797	4	0	7	0	0	logfile
✔	8ADG	15362	2024-02-18	2022-07-08	3.0	3.31	3.06	3.3	0.006	0.62	0.0	0.04	14.03	0.00	1.941	3.67	0.00	4.0	96.0	0.0	0.24	0.64	0.82	3.73	3.3	0.002	0.47	0.0	0.04	15.16	0.00	1.374	2.85	1.03	3.1	96.9	0.0	0.65	0.33	0.60	0.83	3.47	23183	1506	6	0	0	0	11375	logfile
✔	7YFL	33792	2024-02-17	2022-07-08	3.9	4.15	3.84	4.0	0.005	0.64	0.0	0.04	16.70	0.00	2.260	9.01	0.34	7.9	91.8	0.3	-0.49	0.72	0.77	1.05	4.0	0.003	0.60	0.0	0.04	16.39	0.00	2.248	8.75	3.23	7.6	92.3	0.1	-0.34	1.08	0.72	0.76	1.09	19968	2778	12	0	18	0	0	logfile
✔	8DM1	27523	2024-02-18	2022-07-08	3.04	3.80	3.09	3.5	0.005	0.84	0.0	0.06	13.21	0.01	2.305	3.36	0.54	1.7	98.3	0.0	0.41	0.78	0.75	1.04	3.5	0.003	0.60	0.0	0.04	14.34	0.00	2.147	8.68	2.07	2.2	97.8	0.0	1.00	1.11	0.83	0.85	2.27	22276	2751	24	0	55	0	0	logfile
✔	8DLT	27515	2024-02-19	2022-07-08	2.4	3.35	2.60	2.8	0.005	0.76	0.0	0.05	12.93	0.01	2.220	2.75	0.00	1.7	98.3	0.0	0.21	0.85	0.84	3.11	2.8	0.005	0.58	0.0	0.05	13.52	0.00	2.123	7.75	0.73	2.6	97.4	0.0	0.50	1.13	0.86	0.87	2.92	25245	3120	24	0	60	0	0	logfile
✔	8DLL	27505	2024-02-19	2022-07-08	2.56	3.44	2.79	2.8	0.005	0.78	0.0	0.06	12.79	0.01	2.279	3.13	0.00	2.8	97.2	0.0	-0.16	0.83	0.82	2.65	2.9	0.003	0.54	0.0	0.04	13.79	0.00	2.172	7.84	1.03	2.2	97.8	0.0	0.29	0.48	0.83	0.83	2.31	25095	3102	24	0	60	0	0	logfile
✔	8DLU	27516	2024-02-22	2022-07-08	3.14	3.96	3.32	3.4	0.005	0.80	0.0	0.06	13.06	0.01	2.288	2.95	0.08	1.8	98.2	0.0	0.19	0.82	0.79	1.97	3.4	0.003	0.60	0.0	0.04	14.19	0.00	2.159	9.71	1.08	2.4	97.6	0.0	0.83	1.22	0.82	0.78	1.77	35137	4312	28	0	72	0	0	logfile
✔	8DM3	27525	2024-02-21	2022-07-08	2.37	2.98	2.50	2.6	0.005	0.84	0.0	0.05	12.92	0.01	2.245	4.10	0.24	2.4	97.6	0.0	-0.56	0.78	0.82	2.75	2.6	0.005	0.78	1.0	0.05	14.15	0.00	2.009	10.74	1.45	2.9	97.1	0.0	0.23	0.59	0.78	0.84	2.91	31185	3888	30	0	57	0	0	logfile
✔	8DMF	27535	2024-02-13	2022-07-08	4.0	4.71	3.73	4.1	0.003	0.64	0.0	0.05	14.28	0.00	1.977	13.96	0.00	5.0	95.0	0.0	-0.20	0.81	0.83	—	4.1	0.005	0.73	0.0	0.04	16.01	0.00	1.812	21.12	1.14	7.4	92.6	0.0	-0.69	0.44	0.82	0.84	—	5670	718	1	0	2	0	0	logfile
✘	7YFC	33785	2024-02-14	2022-07-08	3.0	3.40	3.05	3.4	0.005	0.66	0.0	0.04	18.01	0.00	2.198	5.98	0.09	2.5	97.5	0.0	1.05	0.65	0.82	3.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9882	1262	7	0	2	0	0	logfile
✔	8ADE	15361	2024-02-13	2022-07-08	2.78	2.65	2.55	2.7	0.012	1.58	0.0	0.11	9.64	0.00	2.213	3.08	0.00	3.4	96.6	0.0	-4.12	0.74	0.76	3.27	3.0	0.006	0.74	0.0	0.05	15.32	0.00	2.179	15.52	3.48	3.4	96.6	0.0	-2.46	0.73	0.77	0.83	4.61	5026	644	7	0	0	0	0	logfile
✔	8DMX	27548	2024-02-15	2022-07-08	3.37	3.66	3.43	3.6	0.003	0.59	0.0	0.04	13.99	0.00	2.105	6.01	0.00	2.3	97.7	0.0	0.17	0.55	0.79	2.06	3.6	0.002	0.54	0.0	0.04	15.94	0.00	2.005	3.73	1.83	2.5	97.5	0.0	-0.42	0.49	0.70	0.91	2.41	11748	1488	8	0	8	0	0	logfile
✘	8DL7	27498	2024-02-13	2022-07-07	2.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6586	909	6	0	4	1	0	logfile
✘	8AD1	15357	2024-02-20	2022-07-07	4.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	28169	3403	9	71	3	0	0	logfile
✔	8DL8	27499	2024-02-13	2022-07-07	3.0	4.08	3.15	3.6	0.003	0.53	0.0	0.04	16.82	0.01	1.612	6.82	3.54	2.5	97.3	0.1	2.02	0.75	0.82	1.99	3.7	0.003	0.77	0.0	0.04	16.75	0.00	2.043	11.45	3.54	3.0	96.9	0.1	2.44	0.55	0.72	0.83	2.28	6208	877	5	0	2	1	0	logfile
✔	8DL6	27497	2024-02-13	2022-07-07	3.0	4.19	2.98	3.5	0.008	1.09	0.0	0.06	14.53	0.00	2.169	7.37	3.22	6.9	92.1	0.9	-0.55	0.75	0.81	1.88	3.5	0.003	0.70	0.0	0.04	14.88	0.00	2.221	6.69	1.43	5.8	93.9	0.3	2.03	0.47	0.75	0.82	1.32	6171	874	5	0	1	1	0	logfile
✔	7YF0	33780	2024-02-23	2022-07-07	3.4	4.12	3.49	3.9	0.007	1.01	0.0	0.06	10.35	0.01	2.212	4.39	0.33	6.9	93.0	0.1	-4.08	0.55	0.84	2.18	3.9	0.003	0.74	0.0	0.04	14.90	0.00	2.070	11.40	3.20	6.0	93.9	0.1	-0.73	1.56	0.53	0.87	1.89	143441	18210	29	0	7	0	0	logfile
✔	8DLF	27500	2024-02-15	2022-07-07	3.23	3.07	3.22	3.0	0.009	1.29	0.0	0.16	25.90	0.01	2.103	35.48	8.48	8.3	90.2	1.4	-1.74	0.60	0.48	0.90	3.0	0.004	0.75	0.0	0.05	26.17	0.01	2.203	24.76	5.01	9.6	89.4	1.0	-2.21	1.71	0.66	0.57	0.78	7167	631	10	112	0	4	0	logfile

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