Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DL0	27494	2024-02-18	2022-07-06	4.1	4.31	4.17	4.1	0.003	0.67	0.0	0.05	13.22	0.00	2.168	13.34	0.00	4.1	95.9	0.0	0.25	0.73	0.75	—	4.1	0.004	0.69	0.0	0.05	13.69	0.00	2.064	19.29	0.09	5.7	94.3	0.0	-0.19	1.63	0.73	0.77	—	10377	1268	4	0	0	0	0	logfile
✔	8DKX	27493	2024-02-13	2022-07-06	3.0	3.53	3.00	3.4	0.005	0.75	1.0	0.05	13.28	0.00	2.099	8.39	0.62	5.5	94.5	0.0	-3.42	0.62	0.84	4.43	3.4	0.003	0.59	0.0	0.04	15.63	0.00	2.171	6.89	3.11	4.9	95.1	0.0	-0.07	0.91	0.57	0.84	3.58	4370	553	3	0	0	0	0	logfile
✔	7YEP	33774	2024-02-23	2022-07-06	2.83	2.91	2.90	3.0	0.006	0.67	0.0	0.04	14.19	0.02	1.995	11.66	0.00	5.5	94.5	0.0	0.21	0.59	0.68	1.29	3.0	0.003	0.53	0.0	0.03	16.27	0.00	1.975	7.55	0.87	4.7	95.3	0.0	0.79	0.93	0.66	0.81	1.92	40332	2456	8	0	4	0	20284	logfile
✔	7YEZ	33779	2024-02-25	2022-07-06	3.4	4.04	3.50	3.9	0.008	1.09	6.0	0.07	10.87	0.01	1.398	7.56	0.30	8.8	91.1	0.1	-3.92	0.45	0.78	1.22	3.9	0.005	0.81	4.0	0.05	15.40	0.01	1.978	15.47	3.82	6.9	93.0	0.0	-0.90	1.65	0.50	0.86	1.54	146052	18531	28	0	6	0	0	logfile
✔	7YEV	33778	2024-02-25	2022-07-06	3.6	3.85	3.59	3.8	0.006	1.01	3.0	0.07	10.23	0.01	1.289	5.98	0.18	6.9	93.0	0.1	-3.55	0.52	0.85	2.42	3.8	0.004	0.70	0.0	0.04	14.32	0.00	1.988	10.85	3.26	6.0	94.0	0.0	-0.39	0.63	0.53	0.87	2.04	146393	18559	35	0	18	0	0	logfile
✔	8ACP	15352	2024-02-20	2022-07-06	4.5	4.98	4.52	4.4	0.002	0.61	0.0	0.04	16.33	0.00	2.072	16.33	0.08	6.3	93.7	0.0	-1.27	0.88	0.83	—	4.4	0.005	0.70	0.0	0.04	16.55	0.00	1.872	25.58	0.00	8.5	91.5	0.0	-1.54	0.38	0.88	0.84	—	26737	3141	9	104	3	0	0	logfile
✔	7YER	33775	2024-02-16	2022-07-06	3.0	3.14	—	3.2	0.003	0.55	0.0	0.04	13.65	0.00	2.248	4.24	0.13	6.3	93.2	0.4	0.97	0.69	0.82	2.38	3.2	0.002	0.55	0.0	0.04	16.31	0.00	2.157	4.83	1.76	5.9	93.6	0.5	1.17	1.13	0.68	0.83	2.13	14313	1810	6	0	1	0	0	logfile
✘	8DKU	27491	2024-02-15	2022-07-06	3.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10644	1300	5	0	3	0	0	logfile
✔	8DKW	27492	2024-02-13	2022-07-06	3.09	3.64	3.05	3.6	0.006	0.71	1.0	0.06	13.84	0.00	2.097	8.61	0.41	6.2	93.8	0.0	-2.92	0.60	0.83	3.25	3.6	0.004	0.61	0.0	0.04	15.31	0.00	2.166	7.01	2.70	6.2	93.8	0.0	-0.38	0.29	0.55	0.84	2.64	4370	553	3	0	0	0	0	logfile
✔	8ACT	15353	2024-02-17	2022-07-06	3.6	4.18	3.75	3.6	0.003	0.64	0.0	0.04	14.83	0.00	1.812	16.02	0.00	2.9	97.1	0.0	0.58	0.83	0.70	0.76	3.6	0.003	0.69	0.0	0.04	16.64	0.00	1.961	18.58	1.68	4.0	96.0	0.0	0.07	2.02	0.83	0.72	1.02	18843	2322	8	0	6	0	0	logfile
✔	7YET	33777	2024-02-15	2022-07-06	3.3	3.55	—	3.5	0.004	0.61	0.0	0.04	14.41	0.01	2.204	7.29	0.23	5.9	93.7	0.4	1.31	0.70	0.81	2.52	3.6	0.004	0.88	2.0	0.04	15.88	0.01	1.816	7.88	1.60	6.6	92.9	0.5	1.16	1.50	0.71	0.84	2.41	11862	1493	6	0	1	0	0	logfile
✔	7YES	33776	2024-02-16	2022-07-06	3.4	3.49	—	3.4	0.002	0.53	0.0	0.04	14.11	0.00	2.209	4.52	0.18	6.8	92.6	0.6	0.91	0.80	0.86	2.46	3.4	0.002	0.54	0.0	0.04	15.81	0.00	2.178	5.44	1.23	6.9	92.4	0.6	1.03	0.89	0.81	0.87	2.44	14679	1863	6	0	1	0	0	logfile
✔	8ABY	15327	2024-02-19	2022-07-05	3.7	4.01	3.81	4.0	0.004	0.62	0.0	0.04	15.03	0.00	2.131	10.11	0.00	4.0	96.0	0.0	-0.33	0.80	0.82	1.54	4.0	0.005	0.65	0.0	0.04	16.60	0.00	2.120	10.89	2.00	4.4	95.6	0.0	0.11	0.45	0.81	0.85	1.33	25719	3166	9	46	3	0	0	logfile
✔	8DKM	27490	2024-02-13	2022-07-05	3.39	3.59	3.11	3.6	0.003	0.64	0.0	0.05	12.93	0.00	2.241	7.23	0.83	6.4	93.6	0.0	-0.94	0.62	0.84	2.67	3.6	0.003	0.56	0.0	0.04	15.17	0.00	2.173	5.62	3.73	6.2	93.8	0.0	-0.16	0.27	0.61	0.85	2.33	4383	553	3	0	1	0	0	logfile
✔	8ACB	15345	2024-02-13	2022-07-05	2.6	2.88	1.65	2.9	0.004	0.71	0.0	0.08	15.24	0.00	2.257	7.47	0.00	7.8	92.2	0.0	-0.81	0.21	0.81	4.10	2.9	0.003	0.59	0.0	0.04	17.97	0.00	2.229	6.61	1.14	8.7	91.3	0.0	-0.45	1.20	0.20	0.84	3.77	1815	220	2	5	0	0	0	logfile
✔	7YEH	33773	2024-02-17	2022-07-05	3.92	4.33	3.78	3.9	0.006	1.00	0.0	0.05	16.73	0.01	2.011	28.89	5.09	7.7	92.3	0.0	-1.15	0.87	0.79	0.84	3.9	0.004	0.73	0.0	0.04	16.17	0.00	2.040	22.93	2.30	6.4	93.6	0.0	-0.09	1.04	0.88	0.82	0.80	19122	2419	5	1	1	0	0	logfile
✔	8DKi	27489	2024-02-13	2022-07-05	3.32	3.57	3.29	3.6	0.003	0.64	0.0	0.05	13.79	0.00	2.204	9.78	0.21	4.6	95.4	0.0	-0.62	0.62	0.84	2.61	3.5	0.004	0.63	0.0	0.04	15.95	0.00	2.200	11.28	2.28	7.1	92.9	0.0	-0.18	0.32	0.60	0.86	2.56	4365	552	3	0	0	0	0	logfile
✔	7YEG	33772	2024-02-13	2022-07-05	3.73	3.29	3.71	3.5	0.002	0.48	0.0	0.04	13.19	0.00	2.191	5.16	0.37	3.1	96.8	0.0	-4.62	0.61	0.57	0.60	3.5	0.004	0.70	0.0	0.04	15.52	0.00	2.118	11.70	2.16	5.5	94.5	0.0	-1.67	3.05	0.59	0.55	1.08	49974	6306	24	0	51	0	0	logfile
✔	7YE9	33766	2024-02-23	2022-07-05	4.17	3.70	4.10	3.5	0.002	0.50	0.0	0.04	12.42	0.00	2.182	5.86	0.82	3.1	96.8	0.1	-4.00	0.65	0.58	—	3.6	0.003	0.65	0.0	0.04	12.37	0.00	2.064	10.38	0.08	4.9	95.1	0.0	-1.40	1.00	0.68	0.68	—	35208	4518	18	0	36	0	0	logfile
✔	8DKE	27488	2024-02-13	2022-07-05	3.18	3.43	3.12	3.4	0.003	0.74	2.0	0.05	14.40	0.01	2.179	7.36	0.83	6.2	93.8	0.0	-0.95	0.57	0.85	3.68	3.4	0.003	0.55	0.0	0.04	15.63	0.00	2.246	5.75	2.07	6.0	94.0	0.0	0.21	0.26	0.57	0.86	3.45	4369	553	3	0	0	0	0	logfile

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