Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ABL	15325	2024-02-21	2022-07-04	2.1	2.00	2.04	2.0	0.010	1.69	34.0	0.11	18.71	0.01	2.060	2.82	4.41	2.2	97.8	0.0	-0.94	0.73	0.90	6.29	2.0	0.002	0.56	0.0	0.04	17.42	0.00	2.169	4.25	1.33	1.0	99.0	0.0	2.13	1.29	0.74	0.90	5.67	31660	3878	33	0	32	0	0	logfile
✔	7YDP	33755	2024-02-13	2022-07-04	3.1	2.36	3.18	2.1	0.005	0.73	0.0	0.05	12.57	0.00	2.123	11.85	0.00	5.2	94.8	0.0	-1.21	0.68	0.65	1.63	2.0	0.003	0.66	0.0	0.04	14.75	0.00	2.148	10.85	2.55	4.7	95.3	0.0	-0.10	0.37	0.69	0.66	1.16	8028	1022	5	0	0	0	0	logfile
✔	8ABJ	15323	2024-02-22	2022-07-04	3.7	3.62	3.32	3.1	0.012	1.93	76.0	0.13	18.57	0.01	1.563	3.98	4.36	2.8	97.2	0.1	-1.58	0.80	0.91	3.30	3.1	0.002	0.55	0.0	0.04	16.88	0.00	2.151	7.31	0.90	1.5	98.5	0.0	1.97	1.80	0.79	0.87	2.44	32548	3999	32	0	31	0	0	logfile
✔	8ABH	15321	2024-02-22	2022-07-04	3.0	3.35	2.86	3.0	0.012	1.85	55.0	0.12	18.49	0.01	2.040	4.45	4.03	2.6	97.4	0.1	-1.61	0.81	0.90	3.06	3.0	0.004	0.61	0.0	0.04	17.14	0.00	2.126	9.08	0.81	1.7	98.3	0.0	1.55	1.65	0.81	0.92	3.23	32548	3999	33	0	31	0	0	logfile
✔	8AB8	15314	2024-02-22	2022-07-04	2.6	2.84	2.42	2.7	0.010	1.62	34.0	0.11	18.12	0.01	2.069	3.46	3.28	2.5	97.5	0.0	-1.23	0.83	0.95	5.43	2.7	0.004	0.59	0.0	0.04	17.13	0.00	2.150	4.17	0.93	1.5	98.5	0.0	2.05	0.99	0.81	0.93	4.39	32550	3997	33	0	32	0	0	logfile
✔	8ABG	15320	2024-02-22	2022-07-04	2.3	2.71	2.21	2.5	0.010	1.69	45.0	0.11	18.08	0.01	2.059	3.18	3.25	2.5	97.5	0.0	-1.11	0.84	0.95	5.66	2.5	0.003	0.64	0.0	0.04	16.89	0.00	2.100	4.65	0.72	1.3	98.7	0.0	2.14	1.55	0.82	0.94	4.50	32540	3999	34	0	31	0	0	logfile
✔	8ABF	15319	2024-02-22	2022-07-04	2.3	2.70	2.22	2.5	0.010	1.75	55.0	0.11	18.08	0.01	2.075	3.17	3.22	2.3	97.7	0.0	-1.13	0.84	0.95	5.80	2.5	0.002	0.54	0.0	0.04	16.80	0.00	2.153	4.59	0.60	1.4	98.6	0.0	2.14	1.55	0.81	0.93	4.56	32540	3999	33	0	31	0	0	logfile
✔	7YDM	33753	2024-02-13	2022-07-04	2.89	2.31	2.90	2.1	0.007	0.72	0.0	0.05	13.26	0.01	2.115	3.82	0.00	5.0	95.0	0.0	-0.11	0.79	0.80	3.14	2.1	0.004	0.57	0.0	0.04	16.15	0.00	2.155	3.33	2.38	4.4	95.6	0.0	0.81	0.34	0.80	0.82	2.19	8131	1031	5	0	0	0	0	logfile
✔	8ABE	15318	2024-02-22	2022-07-04	2.3	2.69	2.21	2.5	0.010	1.72	37.0	0.11	18.06	0.01	2.050	3.27	3.37	2.5	97.5	0.0	-1.16	0.84	0.95	5.67	2.5	0.002	0.54	0.0	0.04	16.91	0.00	2.139	4.48	0.66	1.3	98.7	0.0	2.14	0.98	0.82	0.94	4.49	32540	3999	32	0	31	0	0	logfile
✔	8AB9	15315	2024-02-22	2022-07-04	3.3	3.62	3.23	3.4	0.011	1.79	51.0	0.11	18.51	0.01	2.046	4.23	3.82	2.5	97.4	0.1	-1.63	0.82	0.94	4.12	3.4	0.003	0.55	0.0	0.04	16.77	0.00	2.126	6.38	0.93	1.6	98.4	0.0	2.03	1.31	0.82	0.92	3.35	32540	3999	32	0	31	0	0	logfile
✔	8ABM	15326	2024-02-22	2022-07-04	2.8	3.31	2.69	3.0	0.011	1.76	55.0	0.12	18.39	0.01	2.055	3.35	3.85	2.6	97.4	0.1	-1.57	0.84	0.95	4.56	3.0	0.004	0.58	0.0	0.04	16.83	0.00	2.174	5.13	0.60	1.3	98.7	0.0	1.87	1.27	0.83	0.93	3.53	32540	3999	32	0	31	0	0	logfile
✔	8ABB	15317	2024-02-22	2022-07-04	3.2	3.58	3.15	3.4	0.011	1.78	46.0	0.11	18.42	0.01	1.629	4.05	3.76	2.4	97.6	0.0	-1.54	0.83	0.94	4.34	3.4	0.004	0.56	0.0	0.04	16.62	0.00	2.152	5.71	0.78	1.6	98.4	0.0	2.01	0.54	0.80	0.92	3.25	32540	3999	33	0	31	0	0	logfile
✔	8ABi	15322	2024-02-22	2022-07-04	3.0	3.38	2.88	3.0	0.011	1.83	58.0	0.12	18.41	0.01	2.058	4.06	3.82	2.7	97.3	0.0	-1.54	0.81	0.89	2.93	3.0	0.003	0.61	0.0	0.04	16.98	0.00	2.110	8.22	0.57	1.7	98.3	0.0	1.77	1.65	0.80	0.91	3.13	32548	3999	32	0	31	0	0	logfile
✔	8ABA	15316	2024-02-22	2022-07-04	3.2	3.57	3.13	3.3	0.011	1.76	38.0	0.11	18.44	0.01	2.064	4.03	3.58	2.5	97.5	0.0	-1.57	0.83	0.94	4.20	3.3	0.003	0.56	0.0	0.04	16.79	0.00	2.169	6.39	0.87	1.6	98.4	0.0	1.96	1.00	0.80	0.92	3.27	32540	3999	31	0	31	0	0	logfile
✔	8AB7	15313	2024-02-22	2022-07-04	3.3	2.57	3.15	3.1	0.013	1.99	78.0	0.12	19.18	0.01	1.874	7.05	5.54	2.9	97.0	0.1	-1.88	0.61	0.84	3.31	3.0	0.004	0.62	0.0	0.04	17.93	0.00	2.048	10.26	2.94	2.2	97.7	0.1	1.08	1.33	0.64	0.84	2.88	33654	4124	34	0	36	0	0	logfile
✔	8ABK	15324	2024-02-22	2022-07-04	2.5	2.72	2.19	2.6	0.010	1.70	31.0	0.11	18.17	0.01	2.069	3.67	3.10	2.5	97.5	0.0	-1.30	0.82	0.94	5.41	2.6	0.003	0.56	0.0	0.04	17.22	0.00	2.156	4.95	0.93	1.2	98.8	0.0	2.04	1.31	0.79	0.93	4.25	32573	3997	34	0	33	0	0	logfile
✔	7YCX	33741	2024-02-14	2022-07-02	4.18	4.23	4.26	4.0	0.004	0.63	1.0	0.04	14.15	0.00	1.722	11.71	0.18	5.5	94.3	0.2	0.51	0.85	0.76	—	4.0	0.004	0.66	0.0	0.04	14.41	0.00	1.784	13.02	0.02	5.4	94.5	0.1	0.76	0.47	0.87	0.80	—	113089	14682	42	104	69	0	0	logfile
✔	7YD1	33745	2024-02-13	2022-07-02	2.99	2.38	7.99	2.2	0.002	0.49	0.0	0.04	9.00	0.00	2.215	6.14	5.46	10.0	90.0	0.0	-4.06	0.75	0.74	3.20	2.2	0.004	0.73	0.0	0.04	13.64	0.00	2.005	11.83	3.28	10.0	90.0	0.0	-2.01	0.58	0.77	0.79	3.23	3305	428	3	0	0	0	0	logfile
✔	7YD0	33744	2024-02-21	2022-07-02	3.58	2.60	3.55	2.1	0.002	0.59	0.0	0.04	9.45	0.00	2.223	7.06	5.95	6.5	93.4	0.1	-4.80	0.71	0.70	2.21	2.2	0.003	0.71	0.0	0.04	13.98	0.00	2.072	12.53	4.39	8.7	91.3	0.0	-2.30	1.29	0.72	0.73	1.84	30413	3944	7	0	0	0	0	logfile
✔	7YCY	33742	2024-02-20	2022-07-02	3.74	2.71	3.69	2.1	0.002	0.53	0.0	0.04	8.83	0.00	2.242	5.97	4.56	6.3	93.7	0.0	-4.39	0.72	0.71	2.15	2.1	0.004	0.76	2.0	0.05	13.63	0.01	2.027	13.50	3.73	7.7	92.3	0.0	-2.08	0.78	0.72	0.72	1.86	29175	3773	9	0	0	0	0	logfile

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