Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7YD1	33745	2024-02-13	2022-07-02	2.99	2.38	7.99	2.2	0.002	0.49	0.0	0.04	9.00	0.00	2.215	6.14	5.46	10.0	90.0	0.0	-4.06	0.75	0.74	3.20	2.2	0.004	0.73	0.0	0.04	13.64	0.00	2.005	11.83	3.28	10.0	90.0	0.0	-2.01	0.58	0.77	0.79	3.23	3305	428	3	0	0	0	0	logfile
✔	7YCX	33741	2024-02-14	2022-07-02	4.18	4.23	4.26	4.0	0.004	0.63	1.0	0.04	14.15	0.00	1.722	11.71	0.18	5.5	94.3	0.2	0.51	0.85	0.76	—	4.0	0.004	0.66	0.0	0.04	14.41	0.00	1.784	13.02	0.02	5.4	94.5	0.1	0.76	0.47	0.87	0.80	—	113089	14682	42	104	69	0	0	logfile
✘	8DJM	27461	2024-02-13	2022-07-01	3.23	3.66	3.31	3.6	0.029	1.53	2.0	1.04	32.65	0.00	1.844	8.23	0.82	3.7	96.3	0.0	-2.26	0.49	0.75	3.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7032	862	7	0	8	0	0	logfile
✔	8DK2	27481	2024-02-19	2022-07-01	4.1	4.81	4.17	4.1	0.002	0.47	0.0	0.04	13.70	0.00	1.988	7.72	2.88	3.7	96.3	0.0	2.05	0.84	0.80	—	4.1	0.002	0.49	0.0	0.04	14.12	0.00	2.038	6.61	0.00	3.4	96.6	0.0	2.16	0.58	0.85	0.80	—	23727	2840	12	52	4	0	0	logfile
✔	7YCi	33740	2024-02-14	2022-07-01	2.98	4.31	3.09	3.2	0.002	0.48	0.0	0.02	24.35	0.00	1.521	15.79	0.00	0.0	0.0	0.0	—	0.93	0.84	—	3.3	0.005	0.62	0.0	0.04	24.57	0.00	1.865	23.49	0.00	0.0	0.0	0.0	—	0.94	0.95	0.90	—	8474	0	2	395	4	0	0	logfile
✔	7YC8	33736	2024-02-14	2022-07-01	4.14	7.25	4.31	4.1	0.002	0.51	0.0	0.02	25.12	0.00	2.079	18.05	0.00	0.0	0.0	0.0	—	0.96	0.87	—	4.1	0.006	0.81	0.0	0.04	27.57	0.01	1.977	68.78	0.00	0.0	0.0	0.0	—	1.24	0.97	0.89	—	8335	0	1	388	1	0	0	logfile
✔	8DK3	27482	2024-02-14	2022-07-01	3.28	4.10	3.38	3.6	0.006	0.58	0.0	0.04	16.40	0.00	1.869	3.66	0.85	6.8	93.2	0.0	-0.13	0.85	0.87	2.42	3.7	0.003	0.53	0.0	0.04	17.54	0.00	1.948	3.37	1.46	5.4	94.6	0.0	0.18	0.39	0.86	0.87	2.32	8905	999	7	52	4	0	0	logfile
✔	7YCG	33738	2024-02-14	2022-07-01	3.18	4.71	3.37	3.5	0.002	0.50	0.0	0.03	24.46	0.00	1.893	15.83	0.00	0.0	0.0	0.0	—	0.94	0.84	—	3.5	0.007	0.66	0.0	0.03	24.51	0.00	1.855	32.20	0.00	0.0	0.0	0.0	—	0.31	0.95	0.89	—	8661	0	2	404	4	0	0	logfile
✔	8DK1	27480	2024-02-17	2022-07-01	2.95	3.68	3.03	3.4	0.002	0.42	0.0	0.04	9.97	0.00	2.294	2.83	1.44	3.3	96.7	0.0	2.11	0.85	0.90	2.51	3.4	0.002	0.50	0.0	0.04	12.80	0.00	2.259	4.00	1.10	3.7	96.3	0.0	2.59	0.63	0.85	0.90	2.22	19500	2446	8	0	0	0	0	logfile
✔	7YCH	33739	2024-02-14	2022-07-01	3.09	4.46	3.30	3.5	0.002	0.48	0.0	0.02	24.19	0.00	1.420	15.91	0.00	0.0	0.0	0.0	—	0.92	0.84	—	3.6	0.007	0.67	0.0	0.04	24.32	0.00	1.812	30.74	0.00	0.0	0.0	0.0	—	0.91	0.94	0.88	—	8661	0	2	404	4	0	0	logfile
✔	8AAF	15296	2024-02-29	2022-07-01	2.5	3.21	—	2.7	0.006	0.92	8.0	0.05	21.66	0.01	1.419	4.21	1.14	3.8	96.1	0.1	-0.37	0.90	0.85	3.18	2.7	0.003	0.60	1.0	0.04	21.65	0.00	1.978	9.22	1.57	4.0	95.9	0.0	0.57	1.15	0.92	0.89	2.83	151377	9427	69	3640	41	0	0	logfile
✘	8DJK	27460	2024-02-13	2022-06-30	3.33	3.77	3.32	3.7	0.029	1.52	1.0	1.03	32.03	0.01	1.327	7.25	0.82	5.0	95.0	0.0	-1.84	0.48	0.73	2.65	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7091	870	7	0	8	0	0	logfile
✔	8DJB	27459	2024-02-16	2022-06-30	3.18	3.51	3.10	3.3	0.005	0.72	0.0	0.06	12.90	0.00	1.908	12.93	6.96	4.2	95.6	0.2	-0.69	0.82	0.81	1.93	3.3	0.003	0.61	0.0	0.04	15.59	0.00	2.188	7.12	1.41	3.1	96.9	0.0	0.81	1.07	0.86	0.90	2.24	16781	2156	9	0	1	0	0	logfile
✔	7YC5	33734	2024-02-23	2022-06-30	3.1	3.32	3.15	3.3	0.006	0.83	0.0	0.06	14.00	0.02	2.222	17.88	0.78	5.8	94.2	0.0	-1.47	0.45	0.44	2.00	3.3	0.007	0.82	0.0	0.05	15.48	0.01	2.089	15.36	3.07	5.2	94.8	0.0	-1.06	1.10	0.65	0.72	2.12	39157	5028	12	0	32	0	0	logfile
✔	7YBH	33721	2024-02-20	2022-06-29	3.5	4.02	3.94	3.9	0.005	0.77	0.0	0.05	18.85	0.01	1.909	10.92	0.42	7.5	92.4	0.1	-0.97	0.76	0.76	1.04	3.9	0.006	0.81	0.0	0.05	15.24	0.00	2.081	11.99	2.87	8.0	92.0	0.0	-1.13	0.85	0.78	0.83	1.91	26964	3297	37	0	96	0	0	logfile
✔	8AA1	15290	2024-02-19	2022-06-29	2.9	3.20	2.77	3.0	0.011	0.55	0.0	0.04	12.37	0.00	2.061	7.22	0.00	1.6	98.4	0.1	1.18	0.86	0.90	3.93	3.0	0.006	0.60	2.0	0.04	12.08	0.00	1.950	6.04	0.85	2.8	97.1	0.1	0.50	0.29	0.85	0.91	4.30	23634	2950	12	0	26	0	0	logfile
✔	7YBK	33724	2024-02-20	2022-06-29	3.9	4.09	4.18	4.0	0.005	0.75	0.0	0.05	15.43	0.01	2.106	10.35	0.32	3.8	96.1	0.1	-1.53	0.74	0.74	1.92	4.0	0.004	0.70	0.0	0.05	14.95	0.00	2.085	11.33	2.06	5.6	94.4	0.0	-0.90	0.78	0.76	0.79	1.69	26491	3225	34	0	91	0	0	logfile
✔	8DiS	27441	2024-02-21	2022-06-29	2.62	3.13	2.74	3.0	0.008	0.91	0.0	0.05	17.84	0.00	2.224	4.63	5.04	3.7	95.9	0.4	-1.28	0.78	0.82	4.42	3.1	0.003	0.56	0.0	0.04	16.41	0.00	2.283	4.06	3.05	3.1	96.7	0.3	-0.36	0.26	0.71	0.86	4.31	17044	2148	30	0	27	61	0	logfile
✔	8A9Y	15288	2024-02-19	2022-06-29	3.5	4.25	3.38	3.6	0.002	0.48	0.0	0.04	9.99	0.00	2.100	8.53	0.04	4.2	95.7	0.1	0.29	0.72	0.85	2.79	3.6	0.004	0.56	0.0	0.04	11.69	0.00	1.867	10.15	1.39	4.8	95.0	0.2	-0.31	1.54	0.73	0.86	2.84	23688	2988	8	0	2	0	0	logfile
✔	8AA3	15292	2024-02-19	2022-06-29	2.7	3.00	2.56	2.8	0.010	0.50	0.0	0.04	14.25	0.00	2.085	7.26	0.00	1.6	98.4	0.0	1.42	0.84	0.89	3.41	2.8	0.003	0.49	0.0	0.04	14.46	0.00	1.921	5.63	1.01	2.0	98.0	0.0	0.67	1.13	0.84	0.90	4.47	23634	2950	12	0	26	0	0	logfile

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