Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7YBK	33724	2024-02-20	2022-06-29	3.9	4.09	4.18	4.0	0.005	0.75	0.0	0.05	15.43	0.01	2.106	10.35	0.32	3.8	96.1	0.1	-1.53	0.74	0.74	1.92	4.0	0.004	0.70	0.0	0.05	14.95	0.00	2.085	11.33	2.06	5.6	94.4	0.0	-0.90	0.78	0.76	0.79	1.69	26491	3225	34	0	91	0	0	logfile
✔	8AA2	15291	2024-02-23	2022-06-29	3.1	3.39	2.97	3.2	0.012	0.60	0.0	0.09	15.44	0.00	1.958	7.56	0.00	3.3	96.6	0.1	0.59	0.84	0.86	3.61	3.2	0.002	0.53	0.0	0.04	14.43	0.00	1.903	7.10	1.04	3.1	96.9	0.1	-0.20	1.56	0.85	0.90	3.89	35942	4472	19	0	49	0	0	logfile
✔	8DiM	27440	2024-02-22	2022-06-29	2.62	3.22	2.95	3.2	0.003	0.56	0.0	0.04	16.98	0.00	2.196	3.84	3.52	2.1	97.6	0.3	0.32	0.71	0.84	3.85	3.2	0.004	0.59	0.0	0.04	15.71	0.00	2.120	3.63	3.75	2.8	97.0	0.1	0.53	0.24	0.69	0.87	4.02	16745	2139	18	0	18	18	0	logfile
✔	7YBi	33722	2024-02-20	2022-06-29	4.1	4.25	4.13	4.1	0.004	0.66	0.0	0.05	15.19	0.00	2.038	11.91	0.21	3.8	96.1	0.1	-0.90	0.77	0.78	—	4.1	0.005	0.68	0.0	0.05	13.16	0.00	2.059	15.30	0.07	6.5	93.5	0.0	-0.94	0.40	0.77	0.79	—	26649	3241	35	0	95	0	0	logfile
✔	7YBU	33729	2024-02-13	2022-06-29	2.2	2.92	2.20	2.4	0.008	1.10	7.0	0.08	12.53	0.01	2.192	10.83	0.41	2.0	98.0	0.0	0.51	0.84	0.82	3.72	2.5	0.004	0.60	0.0	0.04	14.53	0.00	2.135	6.00	0.84	2.8	97.2	0.0	0.59	1.23	0.86	0.88	3.82	54318	7062	18	0	6	0	0	logfile
✔	8DiU	27443	2024-02-21	2022-06-29	2.61	3.00	2.64	2.9	0.004	0.69	0.0	0.05	18.25	0.01	2.248	3.69	3.53	3.1	96.4	0.4	0.02	0.76	0.85	4.39	2.9	0.005	0.82	1.0	0.05	16.78	0.00	1.936	3.90	3.47	2.7	96.9	0.3	0.44	0.24	0.77	0.89	4.30	17228	2151	23	0	36	140	0	logfile
✔	7YBJ	33723	2024-02-19	2022-06-29	3.73	3.85	3.73	3.8	0.003	0.67	0.0	0.04	13.01	0.00	2.110	9.11	0.00	4.3	95.7	0.0	-0.43	0.74	0.76	1.78	3.8	0.005	0.66	0.0	0.04	15.13	0.00	2.103	12.51	2.33	6.3	93.7	0.0	-0.29	0.54	0.74	0.76	1.74	25719	3282	3	0	0	0	0	logfile
✔	7YBH	33721	2024-02-20	2022-06-29	3.5	4.02	3.94	3.9	0.005	0.77	0.0	0.05	18.85	0.01	1.909	10.92	0.42	7.5	92.4	0.1	-0.97	0.76	0.76	1.04	3.9	0.006	0.81	0.0	0.05	15.24	0.00	2.081	11.99	2.87	8.0	92.0	0.0	-1.13	0.85	0.78	0.83	1.91	26964	3297	37	0	96	0	0	logfile
✔	8AA3	15292	2024-02-19	2022-06-29	2.7	3.00	2.56	2.8	0.010	0.50	0.0	0.04	14.25	0.00	2.085	7.26	0.00	1.6	98.4	0.0	1.42	0.84	0.89	3.41	2.8	0.003	0.49	0.0	0.04	14.46	0.00	1.921	5.63	1.01	2.0	98.0	0.0	0.67	1.13	0.84	0.90	4.47	23634	2950	12	0	26	0	0	logfile
✔	7YBM	33726	2024-02-20	2022-06-29	3.45	3.55	3.44	3.5	0.004	0.77	0.0	0.05	16.15	0.00	2.092	8.18	0.07	4.7	95.1	0.2	-0.61	0.67	0.64	1.90	3.5	0.003	0.69	0.0	0.04	14.37	0.00	2.163	8.90	1.56	4.9	95.0	0.1	-0.64	0.66	0.74	0.75	1.98	27456	3309	39	0	114	0	0	logfile
✔	8A9Y	15288	2024-02-19	2022-06-29	3.5	4.25	3.38	3.6	0.002	0.48	0.0	0.04	9.99	0.00	2.100	8.53	0.04	4.2	95.7	0.1	0.29	0.72	0.85	2.79	3.6	0.004	0.56	0.0	0.04	11.69	0.00	1.867	10.15	1.39	4.8	95.0	0.2	-0.31	1.54	0.73	0.86	2.84	23688	2988	8	0	2	0	0	logfile
✔	7YAT	33719	2024-02-13	2022-06-28	2.2	2.33	1.39	2.3	0.009	1.06	0.0	0.06	14.84	0.00	2.267	9.86	0.00	4.3	95.7	0.0	-4.79	0.61	0.88	7.98	2.3	0.005	0.90	0.0	0.05	15.44	0.00	2.233	10.36	1.56	4.5	95.5	0.0	-4.89	0.34	0.65	0.92	7.27	4129	600	45	0	0	25	0	logfile
✔	7YAJ	33714	2024-02-13	2022-06-28	3.16	3.97	3.22	3.6	0.005	0.95	0.0	0.05	18.80	0.01	2.150	9.01	1.66	2.6	97.4	0.0	-1.00	0.60	0.66	0.66	3.7	0.003	0.72	0.0	0.04	18.53	0.00	2.077	16.72	4.63	1.8	98.2	0.0	0.43	0.85	0.61	0.74	0.66	7649	997	3	0	2	0	0	logfile
✔	8Di5	27439	2024-02-13	2022-06-28	3.04	3.55	3.03	3.5	0.006	0.95	0.0	0.06	12.40	0.01	2.300	4.17	0.38	3.3	96.7	0.0	-2.40	0.65	0.80	4.29	3.5	0.003	0.57	0.0	0.04	15.51	0.00	2.237	10.85	1.89	2.9	97.1	0.0	-1.39	0.51	0.64	0.80	3.64	2467	311	3	0	1	0	0	logfile
✔	8A99	15273	2024-02-21	2022-06-28	2.5	2.78	2.74	2.6	0.007	1.23	2.0	0.25	17.40	0.01	2.214	6.33	0.21	5.1	94.9	0.1	-0.13	0.72	0.63	1.18	2.6	0.005	0.80	0.0	0.05	15.69	0.00	2.086	13.65	2.71	5.2	94.7	0.0	-0.80	0.93	0.83	0.82	2.41	30897	3864	20	0	60	0	0	logfile
✔	7YAH	33712	2024-02-13	2022-06-28	3.12	3.28	3.14	3.3	0.006	0.84	0.0	0.05	15.97	0.01	2.229	8.86	0.35	2.6	97.4	0.0	0.05	0.63	0.71	1.63	3.3	0.002	0.53	0.0	0.04	16.26	0.00	2.211	10.28	3.07	2.0	98.0	0.0	1.43	0.36	0.63	0.74	1.27	7666	999	3	0	2	0	0	logfile
✔	8DHX	27437	2024-02-16	2022-06-28	2.92	3.26	3.25	6.7	0.004	0.82	0.0	0.04	17.61	0.00	2.218	6.05	1.95	1.8	97.7	0.6	3.55	0.41	0.20	4.09	3.3	0.003	0.58	0.0	0.03	18.14	0.00	2.340	5.35	1.52	2.3	97.7	0.0	5.72	0.48	0.70	0.78	2.96	34200	4152	24	0	0	0	0	logfile
✔	7YAG	33711	2024-02-16	2022-06-28	3.1	3.30	3.18	3.2	0.005	0.81	0.0	0.05	15.72	0.01	2.259	4.52	0.12	2.2	97.8	0.0	0.92	0.63	0.74	1.88	3.2	0.003	0.52	0.0	0.04	15.38	0.00	2.172	8.53	1.42	2.9	97.1	0.0	1.53	0.43	0.60	0.74	1.89	15456	999	3	0	2	0	7790	logfile
✔	8A9A	15274	2024-02-15	2022-06-28	3.3	3.59	3.34	3.6	0.003	0.67	0.0	0.04	18.00	0.00	2.116	12.52	0.14	10.5	89.1	0.4	-1.45	0.63	0.58	1.12	3.6	0.008	1.13	1.0	0.05	18.51	0.00	1.982	19.77	4.29	11.8	87.9	0.4	-2.30	1.48	0.70	0.69	1.20	12772	1618	2	0	0	0	0	logfile
✔	7YAM	33717	2024-02-13	2022-06-28	3.3	3.46	3.26	3.4	0.003	0.53	0.0	0.04	14.47	0.00	1.756	6.05	0.13	1.6	98.4	0.0	1.95	0.70	0.80	2.17	3.4	0.003	0.93	0.0	0.04	16.23	0.00	1.933	7.97	2.41	2.1	97.9	0.0	1.88	0.40	0.69	0.82	1.77	6672	871	1	0	2	0	0	logfile

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