Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7YAG	33711	2024-02-16	2022-06-28	3.1	3.30	3.18	3.2	0.005	0.81	0.0	0.05	15.72	0.01	2.259	4.52	0.12	2.2	97.8	0.0	0.92	0.63	0.74	1.88	3.2	0.003	0.52	0.0	0.04	15.38	0.00	2.172	8.53	1.42	2.9	97.1	0.0	1.53	0.43	0.60	0.74	1.89	15456	999	3	0	2	0	7790	logfile
✔	8Di5	27439	2024-02-13	2022-06-28	3.04	3.55	3.03	3.5	0.006	0.95	0.0	0.06	12.40	0.01	2.300	4.17	0.38	3.3	96.7	0.0	-2.40	0.65	0.80	4.29	3.5	0.003	0.57	0.0	0.04	15.51	0.00	2.237	10.85	1.89	2.9	97.1	0.0	-1.39	0.51	0.64	0.80	3.64	2467	311	3	0	1	0	0	logfile
✔	8A9A	15274	2024-02-15	2022-06-28	3.3	3.59	3.34	3.6	0.003	0.67	0.0	0.04	18.00	0.00	2.116	12.52	0.14	10.5	89.1	0.4	-1.45	0.63	0.58	1.12	3.6	0.008	1.13	1.0	0.05	18.51	0.00	1.982	19.77	4.29	11.8	87.9	0.4	-2.30	1.48	0.70	0.69	1.20	12772	1618	2	0	0	0	0	logfile
✔	8DHM	27436	2024-02-15	2022-06-27	2.73	3.45	2.74	3.3	0.006	0.76	0.0	0.04	12.98	0.01	2.002	5.25	0.65	1.7	98.3	0.0	0.74	0.71	0.83	3.56	3.2	0.004	0.57	0.0	0.04	13.90	0.00	1.947	3.96	0.16	1.8	98.2	0.0	3.55	1.21	0.63	0.87	2.99	11698	734	6	0	5	91	5900	logfile
✔	8A95	15270	2024-02-21	2022-06-27	2.64	4.21	2.75	2.6	0.010	1.30	9.0	0.09	14.68	0.01	2.042	7.53	0.00	5.4	94.5	0.2	-0.39	0.67	0.53	1.49	2.6	0.004	0.77	0.0	0.05	14.73	0.00	2.107	16.70	1.05	5.8	94.2	0.1	-0.74	1.43	0.89	0.85	1.89	30866	3862	19	0	59	0	0	logfile
✔	7YAD	33709	2024-02-13	2022-06-27	2.66	2.45	2.92	2.2	0.003	0.55	0.0	0.04	12.51	0.00	2.165	5.84	0.00	4.5	95.3	0.1	-1.22	0.71	0.77	3.55	2.2	0.003	0.59	0.0	0.04	14.79	0.00	2.176	6.52	2.65	4.9	94.9	0.2	-1.13	2.15	0.74	0.81	3.00	6728	848	8	0	6	0	0	logfile
✔	7YAC	33708	2024-02-14	2022-06-27	3.24	2.68	3.20	3.0	0.004	0.59	0.0	0.04	14.30	0.00	2.235	6.23	0.00	3.9	96.1	0.0	0.07	0.65	0.79	2.16	3.1	0.003	0.58	0.0	0.04	16.39	0.00	2.146	6.85	2.67	4.5	95.5	0.0	0.09	0.93	0.65	0.81	1.79	8937	1140	6	0	1	0	0	logfile
✔	8A93	15267	2024-02-13	2022-06-27	3.05	3.59	3.21	3.4	0.005	0.57	0.0	0.04	18.98	0.00	2.072	4.02	0.64	3.4	96.6	0.0	1.45	0.73	0.86	2.30	3.4	0.002	0.51	0.0	0.03	19.21	0.00	1.980	4.64	1.44	2.7	97.3	0.0	1.52	0.90	0.71	0.86	2.07	7353	828	9	44	4	0	0	logfile
✘	8A94	15269	2024-02-21	2022-06-27	2.4	2.82	2.71	2.7	0.007	1.10	1.0	0.07	14.51	0.01	2.046	6.57	0.66	5.3	94.7	0.1	-0.60	0.67	0.57	0.90	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30862	3864	19	0	57	0	0	logfile
✔	7Y9S	33690	2024-02-19	2022-06-26	3.0	2.41	3.07	2.2	0.004	0.64	0.0	0.05	14.21	0.01	2.203	5.75	0.26	4.9	94.8	0.3	-0.13	0.79	0.80	3.10	2.2	0.003	0.63	0.0	0.05	15.65	0.00	2.213	6.21	1.86	5.1	94.8	0.1	-0.11	0.36	0.80	0.81	2.84	25273	3126	22	0	53	0	0	logfile
✔	7YA0	33698	2024-02-14	2022-06-26	3.1	3.62	3.66	3.3	0.003	0.68	0.0	0.05	14.04	0.00	2.001	9.13	0.19	5.5	94.2	0.3	-0.72	0.75	0.78	1.83	3.3	0.003	0.62	0.0	0.04	15.12	0.00	2.122	10.05	1.07	5.9	94.0	0.1	-0.42	0.40	0.75	0.82	1.76	39996	4917	27	0	66	0	0	logfile
✔	7Y9Y	33696	2024-02-16	2022-06-26	2.77	3.00	2.82	3.0	0.003	0.60	0.0	0.04	17.98	0.01	2.064	8.75	1.63	1.5	98.5	0.0	0.08	0.70	0.83	3.22	3.0	0.002	0.54	0.0	0.04	18.09	0.00	2.091	7.06	3.12	2.0	98.0	0.0	0.68	0.41	0.64	0.82	3.13	13781	1545	5	61	4	0	0	logfile
✔	7Y9T	33691	2024-02-13	2022-06-26	3.1	3.31	3.07	3.3	0.018	1.56	18.0	0.09	11.12	0.01	2.305	4.09	0.96	6.7	93.3	0.0	-6.23	0.69	0.87	3.51	3.3	0.002	0.64	0.0	0.04	13.47	0.00	2.233	5.30	1.92	4.1	95.9	0.0	-1.38	0.58	0.67	0.87	3.12	7726	992	4	0	0	0	0	logfile
✔	7Y9V	33693	2024-02-13	2022-06-26	3.2	3.43	3.15	3.4	0.013	1.21	6.0	0.06	10.86	0.01	2.057	4.79	0.48	5.1	94.9	0.0	-5.91	0.62	0.83	3.18	3.4	0.003	0.65	0.0	0.04	13.59	0.00	2.168	7.41	3.13	3.8	96.2	0.0	-0.24	1.21	0.63	0.85	2.61	7734	988	8	0	2	4	0	logfile
✔	7Y9X	33695	2024-02-17	2022-06-26	2.49	2.67	2.52	2.7	0.004	0.52	0.0	0.04	11.11	0.00	2.130	5.49	0.31	1.6	98.4	0.0	-0.15	0.70	0.82	4.82	2.7	0.002	0.48	0.0	0.04	15.57	0.00	2.190	6.47	1.56	1.5	98.5	0.0	0.96	1.75	0.67	0.82	3.93	18662	2192	4	38	4	0	0	logfile
✔	7Y9U	33692	2024-02-13	2022-06-26	3.3	3.48	3.23	3.5	0.011	1.06	2.0	0.06	10.08	0.01	2.311	3.19	0.00	5.3	94.7	0.0	-6.23	0.60	0.84	3.22	3.5	0.003	0.60	0.0	0.04	13.88	0.00	2.182	4.92	2.53	2.8	97.2	0.0	-1.50	0.60	0.59	0.84	2.56	7748	988	6	0	2	0	0	logfile
✔	8DH9	27433	2024-02-14	2022-06-25	4.5	3.05	4.86	4.5	0.003	0.65	0.0	0.04	12.03	0.00	2.073	13.96	0.08	2.8	96.9	0.2	0.38	0.65	0.52	—	2.4	0.003	0.74	0.0	0.05	12.81	0.00	2.095	14.06	0.08	3.8	96.1	0.1	-0.31	1.13	0.69	0.60	—	10229	1281	4	0	0	0	0	logfile
✔	8DH7	27431	2024-02-14	2022-06-25	2.99	3.24	3.02	3.3	0.003	0.59	0.0	0.05	12.96	0.01	2.117	6.55	0.55	2.8	97.1	0.1	0.73	0.76	0.86	4.31	3.3	0.003	0.55	0.0	0.04	15.72	0.00	2.013	6.85	2.32	2.7	97.2	0.1	0.79	0.35	0.74	0.88	3.62	8274	1052	2	0	0	0	0	logfile
✘	8DH6	27430	2024-02-15	2022-06-25	2.94	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12901	1560	16	0	17	0	0	logfile
✔	8DHA	27434	2024-02-13	2022-06-25	3.8	4.85	4.37	4.8	0.004	0.76	0.0	0.05	17.10	0.01	2.155	15.08	0.49	4.8	95.2	0.0	0.08	0.69	0.73	0.68	4.8	0.003	0.74	0.0	0.05	17.63	0.00	2.114	11.38	4.44	4.6	95.4	0.0	-0.27	0.53	0.69	0.72	0.84	3510	439	5	0	2	0	0	logfile

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