Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8A8V	15241	2024-02-20	2022-06-24	3.34	3.62	3.37	3.7	0.004	0.79	0.0	0.05	15.57	0.01	2.208	8.03	0.11	3.5	96.5	0.0	-0.58	0.75	0.79	1.81	3.7	0.003	0.62	0.0	0.04	16.76	0.00	2.171	11.44	2.00	3.1	96.9	0.0	0.72	0.40	0.77	0.83	1.53	27164	3396	13	0	33	0	0	logfile
✔	8A8U	15240	2024-02-20	2022-06-24	3.62	3.92	3.73	3.8	0.004	0.83	0.0	0.05	15.49	0.01	2.196	8.04	0.04	3.4	96.6	0.0	-0.39	0.78	0.76	1.16	3.8	0.003	0.66	0.0	0.04	16.83	0.00	2.103	13.60	1.90	3.3	96.7	0.0	0.86	0.99	0.79	0.78	0.87	27129	3391	13	0	33	0	0	logfile
✔	7Y8Y	33686	2024-02-17	2022-06-24	3.0	3.24	3.07	3.2	0.003	0.61	0.0	0.04	18.86	0.00	2.201	6.52	2.51	5.7	94.1	0.2	-0.56	0.76	0.81	2.23	3.2	0.003	0.59	0.0	0.04	19.24	0.00	2.201	6.64	3.26	5.9	93.9	0.2	-0.40	1.14	0.76	0.82	2.15	17023	1971	5	55	4	0	0	logfile
✔	7Y8R	33684	2024-02-24	2022-06-24	4.4	5.29	5.72	4.4	0.003	0.54	0.0	0.04	18.47	0.00	1.920	4.56	0.05	5.0	94.9	0.1	-1.79	0.72	0.53	—	4.4	0.003	0.67	0.0	0.04	19.77	0.00	1.242	14.08	0.00	6.9	93.1	0.0	-0.31	2.11	0.83	0.79	—	43109	4407	28	330	174	0	0	logfile
✔	8A8W	15242	2024-02-20	2022-06-24	4.29	4.56	4.29	4.3	0.003	0.81	0.0	0.05	15.19	0.01	2.183	9.64	0.00	2.8	97.2	0.0	-0.24	0.85	0.80	—	4.3	0.002	0.64	0.0	0.04	14.68	0.00	2.159	15.79	0.00	2.6	97.4	0.0	0.95	0.42	0.85	0.81	—	27187	3398	13	0	35	0	0	logfile
✘	7Y8T	33685	2024-02-16	2022-06-24	2.9	3.12	2.98	3.1	0.004	0.63	1.0	0.04	16.97	0.00	2.218	4.76	1.21	6.0	93.8	0.2	-0.46	0.74	0.85	3.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16754	1978	4	37	4	0	0	logfile
✔	8A8M	15233	2024-02-13	2022-06-23	4.0	5.84	4.31	4.3	0.004	0.89	0.0	0.05	18.82	0.00	2.218	29.09	1.56	8.5	91.4	0.2	-2.63	0.78	0.54	—	4.5	0.004	0.88	0.0	0.05	18.09	0.00	1.935	34.66	3.65	8.6	91.2	0.2	-2.53	1.16	0.83	0.72	—	5244	647	4	0	6	0	0	logfile
✘	7Y89	33682	2024-02-14	2022-06-23	3.02	3.56	3.18	3.4	0.007	0.76	0.0	0.05	14.49	0.00	2.092	11.46	1.29	8.2	91.5	0.4	-1.39	0.69	0.85	2.94	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8641	1110	5	0	0	0	0	logfile
✔	8DGi	27423	2024-02-15	2022-06-23	3.94	4.27	4.04	4.1	0.005	1.16	4.0	0.06	15.93	0.01	2.263	8.89	0.67	5.9	93.8	0.3	-2.32	0.67	0.52	0.27	4.1	0.004	0.75	0.0	0.04	16.48	0.00	2.047	20.88	3.53	6.9	92.9	0.2	-0.43	0.55	0.66	0.51	0.27	13580	1690	2	0	0	0	0	logfile
✘	8DGC	27421	2024-02-19	2022-06-23	3.4	3.02	3.70	3.0	0.006	0.96	2.0	0.05	13.97	0.01	1.993	1.47	0.14	1.9	98.1	0.0	-0.33	0.51	0.52	1.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	81600	10216	16	0	16	0	0	logfile
✔	8DGJ	27427	2024-02-15	2022-06-23	4.02	4.32	4.05	4.1	0.007	1.24	2.0	0.06	14.25	0.01	2.213	11.07	0.13	7.4	92.3	0.3	-2.71	0.69	0.56	—	4.1	0.004	0.74	0.0	0.04	14.02	0.01	2.063	20.23	0.00	7.6	92.3	0.1	-0.59	0.60	0.68	0.55	—	13574	1689	2	0	0	0	0	logfile
✔	8DG9	27419	2024-02-16	2022-06-23	2.24	2.40	2.33	2.5	0.004	0.63	0.0	0.05	17.36	0.00	2.116	5.15	0.91	2.7	97.3	0.0	-0.16	0.69	0.83	4.59	2.5	0.004	0.88	0.0	0.06	16.83	0.00	2.178	4.98	3.25	2.8	97.2	0.0	0.34	1.11	0.68	0.84	4.58	15450	2007	12	0	6	0	0	logfile
✔	8A8J	15231	2024-02-13	2022-06-23	3.1	3.35	3.16	3.3	0.005	0.71	0.0	0.04	19.60	0.00	2.009	4.14	0.19	4.4	95.6	0.0	0.13	0.72	0.84	3.07	3.3	0.003	0.56	0.0	0.04	20.03	0.00	2.012	3.98	1.53	4.6	95.4	0.0	0.26	0.90	0.69	0.85	2.52	6159	682	6	38	4	0	0	logfile
✔	8DG8	27418	2024-02-15	2022-06-23	3.62	3.99	3.58	4.0	0.004	0.72	0.0	0.05	14.02	0.01	2.129	16.01	0.15	8.4	91.6	0.1	-2.83	0.52	0.57	1.57	4.0	0.003	0.71	0.0	0.05	15.98	0.00	2.104	13.70	2.30	7.9	92.0	0.1	-2.29	1.17	0.64	0.64	1.03	11617	1494	8	0	9	0	0	logfile
✔	8DGA	27420	2024-02-16	2022-06-23	3.73	4.05	3.82	3.9	0.007	1.17	0.0	0.06	14.99	0.01	2.210	8.33	0.12	7.0	92.7	0.3	-2.35	0.70	0.60	0.89	3.8	0.004	0.84	1.0	0.05	16.57	0.00	1.755	17.51	2.55	5.7	93.9	0.3	-0.10	0.99	0.70	0.60	0.90	15473	1811	5	41	1	0	0	logfile
✔	8DG4	27407	2024-02-25	2022-06-23	3.12	3.38	3.17	3.4	0.013	1.93	24.0	0.10	13.65	0.01	2.537	0.00	0.15	3.9	96.0	0.1	-2.10	0.68	0.80	3.99	3.4	0.003	0.55	0.0	0.04	15.23	0.00	1.888	2.37	1.30	4.3	95.7	0.0	-0.93	0.44	0.64	0.79	2.72	52368	3488	8	0	0	0	25920	logfile
✔	8DG7	27417	2024-02-16	2022-06-23	3.32	3.61	3.39	3.5	0.007	1.11	1.0	0.06	18.49	0.01	1.980	8.83	1.24	8.7	91.2	0.1	-2.75	0.70	0.70	0.47	3.5	0.003	0.67	0.0	0.04	18.53	0.00	1.920	15.21	4.60	6.9	93.0	0.2	-0.64	0.93	0.71	0.71	0.40	15609	1816	7	47	9	0	0	logfile
✔	8DGF	27422	2024-02-15	2022-06-23	2.9	2.47	3.10	2.7	0.009	1.21	0.0	0.06	14.36	0.01	2.088	1.38	0.53	2.2	97.8	0.0	-0.06	0.48	0.56	2.47	2.4	0.003	0.62	0.0	0.04	16.52	0.00	2.124	7.59	2.09	3.0	97.0	0.0	0.33	0.80	0.50	0.61	1.79	64958	7902	12	0	8	0	0	logfile
✔	8DG5	27416	2024-02-16	2022-06-23	3.26	3.59	3.37	3.5	0.011	1.42	1.0	0.06	16.30	0.01	2.013	8.22	0.00	8.0	91.7	0.3	-2.73	0.69	0.69	1.25	3.5	0.003	0.64	0.0	0.04	17.05	0.00	1.978	13.13	1.67	5.9	93.8	0.3	-0.46	0.37	0.68	0.69	0.57	16269	1887	5	50	12	0	0	logfile
✔	8DFQ	27411	2024-02-16	2022-06-22	3.96	4.53	3.89	4.0	0.007	1.12	0.0	0.06	13.05	0.01	2.270	0.98	0.15	1.8	98.2	0.0	-1.00	0.84	0.79	2.57	4.0	0.004	0.64	0.0	0.04	11.48	0.00	2.109	3.84	0.60	5.1	94.9	0.0	-0.12	0.56	0.84	0.81	1.79	14233	1114	8	0	7	0	6514	logfile

• ← previous
• Page 181 of 633
• next →