Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Y7K	33668	2024-02-13	2022-06-22	4.4	4.96	5.46	4.3	0.010	1.63	0.0	0.07	13.11	0.01	2.215	33.93	3.90	10.3	86.1	3.6	-2.50	0.71	0.63	—	4.4	0.003	0.76	0.0	0.04	11.35	0.00	2.166	15.16	0.35	7.5	92.3	0.2	-1.11	1.42	0.73	0.68	—	2942	422	3	0	0	0	0	logfile
✔	7Y85	33681	2024-02-16	2022-06-22	2.73	3.04	2.87	3.0	0.004	0.57	0.0	0.04	19.99	0.00	1.940	15.62	3.87	2.3	97.7	0.0	-0.05	0.55	0.75	2.97	3.0	0.005	0.59	0.0	0.04	19.89	0.00	1.932	16.06	3.57	2.4	97.6	0.0	0.25	0.31	0.58	0.77	2.90	16502	1884	5	59	5	0	0	logfile
✔	7Y7J	33667	2024-02-19	2022-06-22	3.8	4.33	3.92	3.8	0.007	0.99	1.0	0.08	12.74	0.01	2.008	12.19	1.09	5.6	93.7	0.8	-1.85	0.83	0.82	2.40	3.8	0.003	0.70	0.0	0.05	13.32	0.00	2.185	8.03	1.70	4.6	95.3	0.0	-0.47	1.03	0.84	0.83	2.20	23742	3191	23	0	56	0	0	logfile
✔	7Y84	33680	2024-02-16	2022-06-22	2.61	2.79	2.65	2.8	0.006	0.68	2.0	0.05	19.40	0.00	1.448	15.72	1.92	1.8	98.2	0.0	-0.44	0.67	0.82	3.54	2.8	0.004	0.56	0.0	0.04	19.61	0.00	1.960	14.17	2.64	2.3	97.7	0.0	0.57	0.34	0.68	0.83	3.30	16081	1894	4	35	5	0	0	logfile
✔	7Y7C	33660	2024-02-22	2022-06-22	2.51	2.15	2.49	2.4	0.011	0.74	0.0	0.05	22.51	0.02	1.866	5.70	0.09	3.7	96.2	0.1	-0.01	0.59	0.82	3.80	2.4	0.006	0.80	2.0	0.04	22.85	0.01	1.824	6.46	3.19	3.9	96.0	0.1	-0.11	1.21	0.68	0.87	3.55	141933	5591	62	4557	285	0	0	logfile
✔	7Y7G	33664	2024-02-22	2022-06-22	2.34	1.96	2.32	2.2	0.010	0.75	0.0	0.05	22.51	0.03	1.891	4.79	0.00	3.8	96.1	0.1	0.22	0.53	0.79	4.24	2.2	0.004	0.76	0.0	0.04	22.79	0.01	1.797	6.57	3.58	4.0	95.9	0.1	-0.01	0.90	0.61	0.84	4.18	141958	5591	62	4558	259	0	0	logfile
✔	7Y7F	33663	2024-02-22	2022-06-22	2.43	2.02	2.40	2.4	0.012	0.80	0.0	0.05	22.50	0.02	1.827	5.03	0.04	4.2	95.7	0.1	-0.19	0.55	0.80	4.07	2.3	0.004	0.77	0.0	0.04	22.85	0.01	1.831	6.09	2.27	4.3	95.6	0.1	-0.09	0.88	0.63	0.85	4.12	141929	5591	63	4557	262	0	0	logfile
✔	7Y7D	33661	2024-02-22	2022-06-22	2.58	2.12	2.57	2.5	0.010	0.78	0.0	0.05	22.54	0.02	1.795	7.63	0.00	4.0	95.9	0.1	-0.60	0.52	0.76	3.40	2.5	0.005	0.80	0.0	0.04	23.03	0.01	1.724	7.80	4.63	5.1	94.9	0.1	-0.65	1.23	0.62	0.83	3.26	141917	5591	63	4557	260	0	0	logfile
✔	7Y7Z	33675	2024-02-13	2022-06-22	3.2	3.57	3.17	3.5	0.009	1.04	0.0	0.05	15.11	0.01	2.037	11.20	0.00	7.2	92.8	0.0	-0.11	0.59	0.80	1.84	3.5	0.003	0.70	0.0	0.04	15.71	0.00	2.289	6.42	2.65	5.8	94.2	0.0	0.76	0.45	0.64	0.84	1.43	4303	532	1	0	5	0	0	logfile
✔	7Y7W	33672	2024-02-13	2022-06-22	2.4	2.70	2.46	2.7	0.006	0.78	0.0	0.08	17.20	0.00	1.907	5.88	1.11	3.0	97.0	0.0	0.06	0.68	0.85	4.04	2.7	0.003	0.56	0.0	0.04	16.28	0.00	2.154	5.17	2.45	2.5	97.5	0.0	1.23	1.16	0.70	0.87	3.69	4310	529	1	0	7	48	0	logfile
✔	8DFM	27408	2024-02-16	2022-06-22	3.45	4.16	3.29	3.6	0.008	1.14	0.0	0.07	12.32	0.01	2.387	1.31	0.00	2.0	98.0	0.0	-0.37	0.88	0.83	3.25	3.6	0.004	0.59	0.0	0.04	11.36	0.00	2.036	4.91	0.36	2.9	97.1	0.0	1.08	1.44	0.88	0.84	3.36	15966	1126	10	0	10	0	7566	logfile
✔	7Y7i	33666	2024-02-15	2022-06-22	3.42	3.09	3.34	3.3	0.004	0.57	0.0	0.04	28.76	0.00	2.234	8.91	0.15	1.9	98.1	0.0	2.18	0.64	0.77	1.32	3.2	0.005	0.62	0.0	0.04	28.78	0.00	2.102	8.02	3.35	2.2	97.8	0.0	2.30	0.66	0.68	0.81	2.11	12445	824	12	286	0	0	0	logfile
✔	7Y7V	33671	2024-02-13	2022-06-22	2.2	2.46	2.24	2.4	0.005	0.73	0.0	0.07	16.08	0.00	2.078	5.73	1.11	3.2	96.8	0.0	0.09	0.71	0.86	4.53	2.4	0.003	0.65	0.0	0.05	15.55	0.00	2.230	5.50	3.76	2.3	97.7	0.0	1.61	0.34	0.69	0.87	4.11	4341	532	1	0	4	58	0	logfile
✔	8A8E	15230	2024-02-13	2022-06-22	2.9	2.76	2.92	2.7	0.005	0.79	0.0	0.05	15.95	0.01	2.353	4.32	2.81	7.0	93.0	0.0	-2.84	0.78	0.83	3.00	2.7	0.004	0.64	0.0	0.05	16.89	0.01	2.273	2.30	2.21	6.0	94.0	0.0	0.40	0.48	0.79	0.86	2.80	56568	7248	24	0	0	0	0	logfile
✔	7Y80	33676	2024-02-15	2022-06-22	2.71	2.92	2.77	3.0	0.005	0.90	3.0	0.05	20.87	0.01	2.031	8.90	3.77	1.8	98.2	0.0	-1.49	0.59	0.75	2.46	3.0	0.003	0.56	0.0	0.04	20.44	0.00	1.935	14.71	4.05	1.4	98.6	0.0	0.38	0.36	0.64	0.79	2.82	10572	1218	3	35	5	0	0	logfile
✔	7Y82	33678	2024-02-15	2022-06-22	2.83	2.38	2.88	3.0	0.003	0.57	0.0	0.04	20.35	0.00	1.887	16.18	4.59	1.8	98.2	0.0	0.77	0.77	0.81	2.77	3.0	0.003	0.56	0.0	0.04	20.29	0.00	1.916	15.34	2.89	2.4	97.6	0.0	0.99	0.27	0.70	0.79	2.90	12278	1341	4	66	5	0	0	logfile
✔	8DFo	27409	2024-02-19	2022-06-22	3.1	3.40	3.29	7.2	0.022	1.64	93.0	0.16	18.53	0.01	1.724	6.88	0.57	4.8	95.2	0.0	-0.44	0.27	0.07	0.22	3.4	0.003	0.73	0.0	0.04	18.14	0.01	2.099	16.30	1.88	4.4	95.6	0.0	-0.23	1.84	0.44	0.39	0.68	23861	2912	13	45	0	0	0	logfile
✔	8DFS	27412	2024-02-25	2022-06-22	3.0	3.29	3.13	3.3	0.011	0.90	0.0	0.06	18.70	0.00	1.756	7.27	0.23	3.4	96.6	0.0	0.80	0.61	0.74	3.64	3.3	0.004	0.59	0.0	0.04	17.99	0.00	1.876	6.86	2.37	4.0	96.0	0.0	0.44	1.46	0.68	0.81	3.48	49778	3082	13	48	0	0	24538	logfile
✔	7Y7H	33665	2024-02-22	2022-06-22	2.51	2.14	2.51	2.4	0.010	0.74	0.0	0.05	22.52	0.03	1.859	5.32	0.00	4.0	95.9	0.1	0.09	0.57	0.81	4.06	2.4	0.005	0.80	0.0	0.04	22.85	0.01	1.802	6.12	3.30	4.2	95.7	0.1	-0.11	0.90	0.64	0.86	3.85	141965	5591	64	4558	266	0	0	logfile
✔	8DFV	27415	2024-02-16	2022-06-22	3.06	3.24	3.07	3.2	0.010	1.15	0.0	0.06	16.02	0.01	2.206	10.04	0.00	9.7	90.0	0.3	-2.99	0.68	0.70	2.03	3.2	0.003	0.68	0.0	0.04	17.42	0.00	2.139	14.16	1.88	6.2	93.4	0.4	-0.36	0.64	0.68	0.70	0.89	16710	1917	5	60	10	0	0	logfile

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