Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Y85	33681	2024-02-16	2022-06-22	2.73	3.04	2.87	3.0	0.004	0.57	0.0	0.04	19.99	0.00	1.940	15.62	3.87	2.3	97.7	0.0	-0.05	0.55	0.75	2.97	3.0	0.005	0.59	0.0	0.04	19.89	0.00	1.932	16.06	3.57	2.4	97.6	0.0	0.25	0.31	0.58	0.77	2.90	16502	1884	5	59	5	0	0	logfile
✔	7Y7Y	33674	2024-02-13	2022-06-22	2.4	2.62	2.37	2.6	0.005	0.73	0.0	0.07	16.87	0.00	1.789	6.02	0.45	3.0	97.0	0.0	0.29	0.72	0.87	3.50	2.6	0.003	0.60	0.0	0.04	15.98	0.00	2.107	5.67	2.68	1.7	98.3	0.0	0.92	0.42	0.72	0.88	3.37	4303	527	1	0	7	54	0	logfile
✔	8DFP	27410	2024-02-16	2022-06-22	3.17	3.73	3.15	3.4	0.008	1.13	0.0	0.07	12.92	0.01	2.429	1.23	0.00	1.5	98.5	0.0	-0.93	0.84	0.79	3.52	3.4	0.003	0.57	0.0	0.04	11.92	0.00	1.969	4.13	0.71	2.1	97.9	0.0	0.72	0.55	0.85	0.82	3.42	16124	1118	10	0	10	0	7703	logfile
✔	7Y84	33680	2024-02-16	2022-06-22	2.61	2.79	2.65	2.8	0.006	0.68	2.0	0.05	19.40	0.00	1.448	15.72	1.92	1.8	98.2	0.0	-0.44	0.67	0.82	3.54	2.8	0.004	0.56	0.0	0.04	19.61	0.00	1.960	14.17	2.64	2.3	97.7	0.0	0.57	0.34	0.68	0.83	3.30	16081	1894	4	35	5	0	0	logfile
✔	7Y7C	33660	2024-02-22	2022-06-22	2.51	2.15	2.49	2.4	0.011	0.74	0.0	0.05	22.51	0.02	1.866	5.70	0.09	3.7	96.2	0.1	-0.01	0.59	0.82	3.80	2.4	0.006	0.80	2.0	0.04	22.85	0.01	1.824	6.46	3.19	3.9	96.0	0.1	-0.11	1.21	0.68	0.87	3.55	141933	5591	62	4557	285	0	0	logfile
✔	8A7Q	15224	2024-02-13	2022-06-21	2.8	3.63	2.72	3.4	0.004	0.67	0.0	0.05	11.64	0.00	2.197	7.83	0.00	3.2	96.8	0.0	-5.05	0.45	0.75	5.43	3.4	0.005	1.11	0.0	0.05	15.43	0.00	2.102	16.86	3.42	8.9	91.1	0.0	-4.99	5.24	0.41	0.75	3.02	6492	768	12	0	0	0	0	logfile
✔	8A7o	15222	2024-02-13	2022-06-21	3.0	3.15	2.97	3.0	0.002	0.55	0.0	0.04	11.28	0.00	2.418	6.71	0.00	2.9	97.1	0.0	-3.59	0.50	0.88	5.55	2.9	0.004	0.63	0.0	0.05	14.39	0.00	2.256	5.54	1.81	7.9	92.1	0.0	-3.58	1.40	0.49	0.91	5.45	4362	528	6	0	0	0	0	logfile
✔	8DER	27396	2024-02-18	2022-06-21	3.3	2.43	3.35	2.1	0.005	0.85	0.0	0.06	12.83	0.01	1.967	4.56	0.00	4.2	95.8	0.0	-0.74	0.72	0.76	3.22	2.1	0.004	0.68	0.0	0.04	15.35	0.00	2.064	10.56	3.54	4.9	95.0	0.0	-0.60	1.32	0.74	0.79	2.74	22665	2921	18	0	10	0	0	logfile
✔	8DEW	27401	2024-02-25	2022-06-21	2.89	3.11	2.93	3.1	0.005	0.85	1.0	0.04	14.96	0.00	2.160	6.02	0.16	3.2	96.8	0.0	1.58	0.74	0.84	2.90	3.1	0.003	0.49	0.0	0.04	16.25	0.00	2.103	4.45	1.10	3.4	96.6	0.0	1.74	0.59	0.72	0.86	2.70	48792	3172	7	0	23	0	24295	logfile
✔	7Y76	33653	2024-02-19	2022-06-21	3.2	3.58	3.10	3.3	0.010	0.84	0.0	0.05	16.48	0.00	1.996	13.47	5.15	8.8	90.8	0.3	-3.40	0.74	0.84	2.10	3.3	0.002	0.62	0.0	0.04	15.79	0.00	2.101	7.39	2.16	6.3	93.6	0.1	-0.09	0.42	0.75	0.87	1.54	25180	3042	26	0	46	0	0	logfile
✔	8DEV	27400	2024-02-19	2022-06-21	3.08	3.33	3.11	3.3	0.006	0.91	0.0	0.04	16.82	0.00	1.991	18.31	0.16	4.3	95.7	0.0	0.81	0.76	0.85	2.55	3.3	0.003	0.52	0.0	0.04	16.03	0.00	2.186	4.99	2.12	2.9	97.1	0.0	1.56	1.17	0.74	0.86	2.08	24245	3131	7	0	25	0	0	logfile
✔	7Y6L	33643	2024-02-13	2022-06-21	3.5	3.06	3.33	3.4	0.004	0.54	0.0	0.04	15.59	0.00	2.198	9.08	0.56	2.2	97.8	0.0	-0.30	0.47	0.76	2.09	3.4	0.004	0.58	0.0	0.05	16.66	0.00	2.186	9.70	6.20	3.4	96.6	0.0	0.03	0.91	0.61	0.80	2.86	3308	422	4	0	1	0	0	logfile
✔	7Y6V	33649	2024-02-14	2022-06-21	3.3	4.21	3.47	3.6	0.004	0.74	0.0	0.06	17.91	0.00	2.149	10.16	0.00	5.7	94.0	0.2	-0.46	0.64	0.82	2.69	3.6	0.002	0.64	0.0	0.05	14.33	0.00	2.136	9.39	0.76	5.5	94.3	0.2	-0.44	0.36	0.64	0.83	2.51	9988	1224	16	0	45	0	0	logfile
✔	7Y6T	33647	2024-02-20	2022-06-21	4.2	7.23	4.41	4.1	0.008	0.97	0.0	0.06	19.09	0.01	2.044	40.32	0.41	9.2	90.4	0.4	-1.76	0.90	0.70	—	4.1	0.004	0.79	0.0	0.05	14.00	0.00	2.042	29.50	0.00	9.6	90.1	0.3	-1.67	1.54	0.90	0.70	—	27988	3446	40	0	115	0	0	logfile
✔	7Y6U	33648	2024-02-14	2022-06-21	3.2	4.00	3.27	3.5	0.004	0.69	0.0	0.05	18.86	0.00	2.170	7.45	0.00	5.5	94.2	0.3	-0.28	0.66	0.83	3.27	3.5	0.004	0.62	0.0	0.05	14.20	0.00	2.157	8.17	2.19	5.2	94.6	0.2	-0.34	1.11	0.66	0.84	2.94	9915	1224	13	0	40	0	0	logfile
✔	8DEU	27399	2024-02-20	2022-06-21	2.95	3.22	3.03	3.1	0.006	0.97	0.0	0.05	15.99	0.00	2.211	14.97	3.07	4.7	95.3	0.0	-1.69	0.68	0.83	2.50	3.2	0.002	0.45	0.0	0.04	16.73	0.00	2.185	16.15	3.35	2.9	97.1	0.0	1.47	2.32	0.69	0.85	2.26	29088	3130	7	0	27	0	4959	logfile
✔	7Y6S	33646	2024-02-19	2022-06-21	3.1	4.17	3.22	3.3	0.005	0.76	0.0	0.06	19.82	0.00	2.147	9.28	0.31	4.3	95.5	0.1	-0.64	0.86	0.85	2.88	3.3	0.004	0.76	1.0	0.05	14.84	0.00	2.186	8.18	1.50	3.6	96.4	0.0	0.34	0.33	0.86	0.85	2.59	24852	3012	42	0	120	0	0	logfile
✔	8DEP	27394	2024-02-13	2022-06-21	3.6	4.01	3.65	3.8	0.008	0.76	0.0	0.07	19.70	0.01	2.197	5.44	0.65	0.5	99.5	0.0	3.03	0.47	0.78	1.93	3.9	0.003	0.63	0.0	0.03	13.06	0.00	2.178	8.00	1.29	2.0	98.0	0.0	2.52	0.66	0.46	0.78	1.76	3223	398	1	0	4	0	0	logfile
✘	7Y75	33652	2024-02-19	2022-06-21	3.1	3.35	3.04	3.3	0.008	0.80	0.0	0.05	16.44	0.00	1.927	10.11	4.43	7.1	92.7	0.2	-2.95	0.75	0.86	1.91	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25186	3042	26	0	46	0	0	logfile
✔	7Y6P	33645	2024-02-21	2022-06-21	3.3	3.20	3.21	3.3	0.005	0.66	0.0	0.04	15.54	0.00	1.892	8.44	0.00	2.3	97.7	0.0	3.78	0.77	0.89	3.18	3.3	0.005	0.69	0.0	0.03	16.74	0.00	2.089	3.78	0.94	2.1	97.9	0.0	4.33	0.18	0.76	0.90	2.36	31428	3772	48	0	60	0	0	logfile

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