Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Y6T	33647	2024-02-20	2022-06-21	4.2	7.23	4.41	4.1	0.008	0.97	0.0	0.06	19.09	0.01	2.044	40.32	0.41	9.2	90.4	0.4	-1.76	0.90	0.70	—	4.1	0.004	0.79	0.0	0.05	14.00	0.00	2.042	29.50	0.00	9.6	90.1	0.3	-1.67	1.54	0.90	0.70	—	27988	3446	40	0	115	0	0	logfile
✔	8DEX	27402	2024-02-24	2022-06-21	2.7	2.85	2.68	2.9	0.012	0.95	1.0	0.06	18.60	0.01	1.790	4.35	0.96	3.2	96.8	0.0	0.67	0.46	0.61	4.27	2.9	0.003	0.59	0.0	0.05	18.21	0.00	1.833	4.62	1.96	3.5	96.5	0.0	0.60	1.11	0.68	0.81	4.08	46307	2857	12	48	0	0	22829	logfile
✔	8DER	27396	2024-02-18	2022-06-21	3.3	2.43	3.35	2.1	0.005	0.85	0.0	0.06	12.83	0.01	1.967	4.56	0.00	4.2	95.8	0.0	-0.74	0.72	0.76	3.22	2.1	0.004	0.68	0.0	0.04	15.35	0.00	2.064	10.56	3.54	4.9	95.0	0.0	-0.60	1.32	0.74	0.79	2.74	22665	2921	18	0	10	0	0	logfile
✔	8DEV	27400	2024-02-19	2022-06-21	3.08	3.33	3.11	3.3	0.006	0.91	0.0	0.04	16.82	0.00	1.991	18.31	0.16	4.3	95.7	0.0	0.81	0.76	0.85	2.55	3.3	0.003	0.52	0.0	0.04	16.03	0.00	2.186	4.99	2.12	2.9	97.1	0.0	1.56	1.17	0.74	0.86	2.08	24245	3131	7	0	25	0	0	logfile
✔	7Y71	33650	2024-02-20	2022-06-21	3.12	3.37	3.19	3.4	0.003	0.61	1.0	0.05	15.55	0.00	1.894	7.57	0.17	4.6	95.3	0.1	-0.81	0.67	0.74	2.12	3.4	0.003	0.60	0.0	0.04	16.10	0.00	2.177	5.81	3.36	4.1	95.9	0.0	-0.51	0.46	0.69	0.82	2.06	27075	3428	15	0	28	0	0	logfile
✔	7Y6N	33644	2024-02-13	2022-06-21	4.4	3.58	4.16	4.0	0.003	0.84	0.0	0.05	12.98	0.01	2.222	15.34	0.00	12.1	87.9	0.0	-2.77	0.46	0.56	—	3.6	0.003	0.85	0.0	0.05	13.68	0.00	2.167	14.88	0.00	13.1	86.9	0.0	-2.97	0.76	0.52	0.63	—	3327	426	4	0	1	0	0	logfile
✔	8DEP	27394	2024-02-13	2022-06-21	3.6	4.01	3.65	3.8	0.008	0.76	0.0	0.07	19.70	0.01	2.197	5.44	0.65	0.5	99.5	0.0	3.03	0.47	0.78	1.93	3.9	0.003	0.63	0.0	0.03	13.06	0.00	2.178	8.00	1.29	2.0	98.0	0.0	2.52	0.66	0.46	0.78	1.76	3223	398	1	0	4	0	0	logfile
✔	8DE6	27385	2024-02-15	2022-06-20	3.2	3.41	3.23	3.4	0.010	0.93	0.0	0.06	14.68	0.01	2.169	4.54	2.53	4.0	96.0	0.0	-0.86	0.70	0.82	3.02	3.4	0.004	0.59	0.0	0.04	14.76	0.00	2.213	4.47	3.35	5.0	95.0	0.0	-1.05	0.56	0.72	0.85	3.04	13243	1659	10	0	12	0	0	logfile
✔	8A7D	15220	2024-02-15	2022-06-20	3.06	3.45	3.18	3.4	0.004	0.76	0.0	0.05	14.79	0.01	2.115	7.59	0.50	5.3	94.2	0.5	-0.22	0.64	0.77	2.66	3.4	0.002	0.58	0.0	0.04	15.69	0.00	2.160	7.01	2.35	4.3	95.5	0.2	0.38	0.50	0.60	0.74	2.45	10771	1361	5	0	17	0	0	logfile
✔	8DE7	27386	2024-02-13	2022-06-20	3.27	4.01	3.23	3.8	0.006	1.05	0.0	0.06	16.51	0.01	2.304	8.39	0.90	2.1	97.9	0.0	4.08	0.61	0.78	1.97	3.8	0.004	0.94	0.0	0.04	17.01	0.00	2.069	15.36	4.04	2.5	97.5	0.0	2.33	0.96	0.55	0.74	0.60	4168	526	4	0	4	0	0	logfile
✔	7Y6F	33639	2024-02-21	2022-06-20	2.7	2.68	2.68	2.8	0.003	0.62	0.0	0.03	15.05	0.00	1.807	9.87	0.00	1.7	98.3	0.0	4.11	0.71	0.83	1.79	2.8	0.003	0.68	0.0	0.03	18.67	0.00	2.113	4.75	0.75	0.4	99.6	0.0	4.57	0.30	0.71	0.84	1.11	31427	3772	48	0	59	0	0	logfile
✔	7Y6G	33640	2024-02-21	2022-06-20	3.6	4.77	3.60	3.7	0.003	0.62	0.0	0.03	15.05	0.00	1.807	9.87	0.00	1.7	98.3	0.0	4.11	0.69	0.59	0.30	3.7	0.004	0.66	0.0	0.03	16.83	0.00	1.887	8.29	0.84	1.9	98.1	0.0	4.13	0.68	0.91	0.90	1.42	31427	3772	48	0	59	0	0	logfile
✔	7Y6K	33642	2024-02-13	2022-06-20	3.34	3.42	3.31	3.4	0.004	0.65	0.0	0.04	14.23	0.01	2.222	15.89	0.57	4.9	95.1	0.0	-1.02	0.70	0.79	2.98	3.4	0.004	0.61	0.0	0.04	15.36	0.00	2.095	16.13	4.14	4.6	95.4	0.0	-0.60	1.83	0.71	0.82	3.08	6363	834	5	0	1	0	0	logfile
✔	8DE9	27388	2024-02-13	2022-06-20	3.4	4.08	3.48	3.9	0.005	1.12	0.0	0.06	14.38	0.01	2.309	8.02	0.23	3.3	96.7	0.0	2.27	0.60	0.77	1.86	3.9	0.004	1.00	0.0	0.05	17.28	0.00	2.104	16.63	2.52	3.9	95.9	0.2	1.89	3.04	0.59	0.80	1.36	4115	517	3	0	4	0	0	logfile
✔	8DEJ	27393	2024-02-19	2022-06-20	2.86	3.09	2.91	3.0	0.004	0.73	0.0	0.05	17.95	0.00	1.829	4.19	0.36	4.0	96.0	0.0	-0.19	0.70	0.70	3.05	3.0	0.003	0.59	0.0	0.04	19.48	0.00	2.183	4.33	1.97	3.2	96.8	0.0	0.05	0.65	0.81	0.85	2.81	26197	2975	14	135	0	0	0	logfile
✘	8DDU	27342	2024-02-21	2022-06-19	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32230	3872	12	0	82	0	0	logfile
✘	8DDX	27345	2024-02-22	2022-06-19	3.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	35500	4295	14	0	81	0	0	logfile
✘	8DDV	27343	2024-02-21	2022-06-19	3.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32230	3872	12	0	82	0	0	logfile
✔	8DDY	27382	2024-02-13	2022-06-19	2.89	2.51	2.86	2.8	0.016	1.75	0.0	0.07	16.38	0.01	2.247	4.49	3.82	4.8	95.2	0.0	-2.48	0.54	0.84	3.00	2.8	0.003	0.66	0.0	0.04	17.73	0.00	2.125	10.48	2.04	3.5	96.5	0.0	1.79	0.45	0.56	0.86	2.47	7968	954	18	0	9	330	0	logfile
✔	8DDW	27344	2024-02-19	2022-06-19	4.7	4.19	4.62	4.0	0.003	0.53	0.0	0.04	14.47	0.00	2.179	11.42	8.35	5.4	94.5	0.1	0.15	0.72	0.61	—	4.0	0.003	0.71	0.0	0.04	13.66	0.00	2.020	15.55	0.00	5.7	94.3	0.0	-0.05	1.69	0.78	0.74	—	25869	3198	10	0	68	0	0	logfile

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