Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8DDU	27342	2024-02-21	2022-06-19	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32230	3872	12	0	82	0	0	logfile
✔	8DE4	27384	2024-02-13	2022-06-19	2.9	3.20	2.90	3.3	0.009	0.79	0.0	0.23	18.02	0.01	2.096	10.13	4.35	3.0	97.0	0.0	0.28	0.50	0.66	1.62	3.3	0.003	0.54	0.0	0.04	16.41	0.00	2.151	11.18	5.43	4.7	95.3	0.0	-0.17	0.88	0.52	0.69	1.76	6188	767	5	0	9	0	0	logfile
✔	7Y69	33638	2024-02-14	2022-06-18	3.21	3.59	3.28	3.5	0.008	0.83	0.0	0.06	21.16	0.01	2.196	16.09	0.00	9.2	90.8	0.0	-2.24	0.68	0.81	3.25	3.5	0.006	0.70	0.0	0.05	16.41	0.01	2.201	9.46	1.90	6.0	94.0	0.0	-0.50	0.38	0.68	0.82	2.71	10090	1274	8	0	16	0	0	logfile
✔	7Y68	33637	2024-02-14	2022-06-18	2.87	3.37	3.03	3.3	0.005	0.70	0.0	0.05	22.41	0.01	2.213	11.36	0.09	5.3	94.7	0.0	-1.61	0.68	0.82	3.50	3.3	0.004	0.62	0.0	0.04	15.90	0.00	2.182	8.98	1.61	5.4	94.6	0.0	0.27	1.19	0.65	0.81	2.88	10264	1300	8	0	18	0	0	logfile
✘	8DDS	27340	2024-02-21	2022-06-18	3.5	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32230	3872	12	0	82	0	0	logfile
✔	7Y60	33630	2024-02-15	2022-06-18	3.8	5.07	3.90	3.8	0.004	0.67	0.0	0.04	28.44	0.00	2.200	17.05	1.30	4.0	96.0	0.0	-0.08	0.81	0.68	0.94	3.9	0.005	0.79	0.0	0.04	29.34	0.00	2.026	24.43	4.28	3.1	96.9	0.0	0.33	0.86	0.91	0.86	0.73	11378	1004	12	216	0	0	0	logfile
✘	8DDR	27339	2024-02-21	2022-06-18	3.2	2.96	3.18	3.2	0.015	0.94	0.0	0.07	11.80	0.00	2.251	5.05	1.77	3.3	96.7	0.0	1.33	0.82	0.82	2.55	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32074	3872	12	0	78	0	0	logfile
✔	7Y5Z	33629	2024-02-14	2022-06-18	3.4	3.66	3.34	3.5	0.008	1.03	0.0	0.06	14.62	0.01	2.210	4.56	0.96	7.2	92.8	0.0	-4.63	0.66	0.83	3.22	3.5	0.003	0.70	0.0	0.04	14.49	0.00	2.215	8.32	3.56	5.7	94.3	0.0	-0.31	1.69	0.67	0.85	2.68	9962	1214	13	0	25	0	0	logfile
✘	7Y67	33636	2024-02-15	2022-06-18	2.8	2.24	2.75	2.1	0.003	0.69	0.0	0.04	13.09	0.01	1.877	7.05	0.10	2.5	97.5	0.0	0.59	0.78	0.77	2.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8889	1135	6	0	1	0	0	logfile
✔	8A6L	15210	2024-02-17	2022-06-18	3.18	3.40	3.23	3.4	0.005	0.62	0.0	0.04	10.52	0.01	2.188	4.11	0.00	2.2	97.8	0.0	0.80	0.64	0.82	2.76	3.4	0.003	0.54	0.0	0.04	14.06	0.00	2.083	6.35	0.99	3.4	96.6	0.0	1.25	0.73	0.65	0.85	2.27	16972	1079	5	0	4	3	8495	logfile
✔	8DDJ	27337	2024-02-16	2022-06-18	3.1	4.14	3.25	3.7	0.003	0.63	0.0	0.04	13.09	0.00	2.236	8.70	0.00	4.5	95.1	0.4	2.06	0.77	0.82	2.02	3.7	0.004	0.64	0.0	0.04	14.73	0.00	2.216	8.44	1.57	4.8	94.9	0.3	2.30	0.36	0.78	0.84	1.99	14903	1960	7	0	0	0	0	logfile
✔	7Y64	33633	2024-02-15	2022-06-18	2.9	2.25	2.85	2.1	0.002	0.58	0.0	0.04	12.47	0.00	2.139	5.05	0.19	2.5	97.5	0.0	0.58	0.76	0.77	3.26	2.1	0.003	0.58	0.0	0.04	15.51	0.00	2.219	4.58	2.89	3.3	96.7	0.0	0.85	0.37	0.79	0.81	3.11	9520	1218	6	0	0	0	0	logfile
✔	7Y63	33632	2024-02-14	2022-06-18	3.16	3.52	3.25	3.4	0.006	0.70	0.0	0.05	18.69	0.01	2.214	10.48	0.00	6.0	94.0	0.0	-2.24	0.69	0.82	2.54	3.4	0.003	0.60	0.0	0.04	16.06	0.00	2.201	8.65	2.27	4.7	95.3	0.0	-0.01	1.22	0.67	0.82	2.27	9924	1238	8	0	16	0	0	logfile
✔	7Y66	33635	2024-02-15	2022-06-18	2.9	2.32	2.83	2.1	0.002	0.58	0.0	0.04	12.30	0.00	2.144	6.52	0.00	2.3	97.7	0.0	0.09	0.77	0.77	2.22	2.1	0.003	0.62	0.0	0.04	15.65	0.00	2.202	5.79	3.62	3.4	96.6	0.0	0.66	0.42	0.80	0.81	2.31	8917	1139	6	0	2	0	0	logfile
✘	8DDT	27341	2024-02-21	2022-06-18	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32229	3872	12	0	81	0	0	logfile
✔	7Y65	33634	2024-02-15	2022-06-18	3.2	3.41	3.19	3.4	0.003	0.59	0.0	0.15	14.43	0.01	2.183	8.62	0.85	3.2	96.7	0.1	0.35	0.61	0.70	1.73	3.4	0.003	0.61	0.0	0.04	16.22	0.00	2.145	9.43	3.18	4.1	95.9	0.0	0.39	0.54	0.66	0.77	1.94	8721	1109	6	0	1	0	0	logfile
✘	8DDQ	27338	2024-02-21	2022-06-18	2.7	2.93	2.76	2.9	0.015	0.96	0.0	0.07	12.33	0.00	2.231	4.92	1.61	3.4	96.6	0.0	0.95	0.77	0.85	3.13	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	31842	3848	12	0	78	0	0	logfile
✔	7Y5W	33627	2024-02-14	2022-06-17	3.5	4.54	3.56	3.7	0.003	0.53	0.0	0.03	27.56	0.00	2.102	12.41	0.00	2.0	98.0	0.0	2.53	0.81	0.70	0.94	3.7	0.004	0.86	0.0	0.04	28.65	0.00	2.096	21.46	3.24	2.5	97.5	0.0	0.93	0.95	0.90	0.85	0.98	8811	579	10	202	0	0	0	logfile
✔	8DD2	27332	2024-02-17	2022-06-17	2.9	2.71	2.84	2.9	0.005	0.80	0.0	0.05	14.44	0.01	2.041	5.80	0.00	4.5	95.5	0.0	0.66	0.76	0.86	4.28	2.9	0.003	0.61	0.0	0.04	15.53	0.00	2.172	8.05	2.60	2.7	97.3	0.0	0.66	0.42	0.75	0.89	3.83	17459	2121	17	0	28	0	0	logfile
✔	7Y5U	33625	2024-02-16	2022-06-17	3.8	4.49	3.82	4.2	0.002	0.62	0.0	0.04	12.27	0.00	2.212	12.78	0.11	4.0	96.0	0.0	-0.20	0.80	0.69	1.18	4.2	0.003	0.73	0.0	0.05	14.98	0.00	2.193	20.21	2.46	4.6	95.4	0.0	-0.32	3.39	0.85	0.79	1.09	8865	1139	5	0	0	0	0	logfile

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