Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DD3	27333	2024-02-17	2022-06-17	2.9	2.70	2.96	3.1	0.005	0.82	0.0	0.05	14.34	0.00	2.021	6.29	0.00	3.7	96.3	0.0	0.77	0.77	0.85	4.03	3.1	0.003	0.65	0.0	0.04	14.98	0.00	2.153	5.74	2.55	2.6	97.4	0.0	1.26	1.18	0.74	0.85	3.59	17459	2121	17	0	28	0	0	logfile
✔	8DD2	27332	2024-02-17	2022-06-17	2.9	2.71	2.84	2.9	0.005	0.80	0.0	0.05	14.44	0.01	2.041	5.80	0.00	4.5	95.5	0.0	0.66	0.76	0.86	4.28	2.9	0.003	0.61	0.0	0.04	15.53	0.00	2.172	8.05	2.60	2.7	97.3	0.0	0.66	0.42	0.75	0.89	3.83	17459	2121	17	0	28	0	0	logfile
✔	8DCP	27327	2024-02-15	2022-06-17	2.41	2.31	2.35	2.3	0.003	0.64	0.0	0.04	20.07	0.00	2.253	7.28	3.06	4.3	95.7	0.0	0.79	0.68	0.82	3.67	2.3	0.003	0.66	0.0	0.04	19.94	0.00	2.266	9.84	3.65	4.7	95.3	0.0	0.90	0.23	0.70	0.85	3.57	10595	1281	4	0	0	21	0	logfile
✔	8DD8	27336	2024-02-14	2022-06-17	3.4	3.50	3.43	3.4	0.003	0.60	0.0	0.04	15.62	0.00	2.211	7.34	0.00	4.0	95.9	0.1	-0.65	0.81	0.81	2.33	3.4	0.002	0.51	0.0	0.04	16.84	0.00	2.188	10.11	0.60	4.1	95.9	0.0	0.47	1.22	0.83	0.84	1.89	10492	1272	2	0	0	0	0	logfile
✔	7Y5Q	33622	2024-02-15	2022-06-17	3.8	3.59	3.74	3.8	0.005	0.68	0.0	0.05	13.44	0.01	2.314	4.83	6.70	5.6	94.4	0.0	-2.13	0.74	0.77	2.61	3.8	0.005	0.65	0.0	0.05	15.15	0.00	2.106	10.38	4.47	6.6	93.4	0.0	-1.32	0.43	0.74	0.78	2.53	12762	1634	4	0	1	0	0	logfile
✔	8DCX	27330	2024-02-14	2022-06-17	2.8	3.32	3.33	3.4	0.003	0.58	0.0	0.04	14.71	0.00	2.195	13.47	0.00	5.4	94.6	0.1	-0.04	0.48	0.60	0.77	3.4	0.006	0.98	1.0	0.04	16.74	0.00	2.200	15.24	1.58	4.6	95.3	0.1	0.37	0.42	0.45	0.60	0.62	9627	1166	2	0	0	0	0	logfile
✔	8DD7	27335	2024-02-14	2022-06-17	3.3	3.57	3.30	3.4	0.005	0.94	0.0	0.05	17.63	0.01	2.272	11.26	0.44	6.7	93.3	0.0	-2.46	0.82	0.77	1.51	3.4	0.003	0.64	0.0	0.04	17.62	0.00	2.150	12.42	3.49	5.5	94.5	0.0	-0.06	0.54	0.85	0.83	1.39	10370	1275	3	0	1	0	0	logfile
✔	7Y5G	33619	2024-02-13	2022-06-17	3.85	4.19	3.81	4.2	0.002	0.43	0.0	0.04	12.74	0.00	2.084	2.19	0.00	0.7	99.3	0.0	-0.05	0.63	0.72	1.21	4.1	0.002	0.51	0.0	0.04	15.53	0.00	2.012	5.62	2.45	1.0	99.0	0.0	1.56	0.67	0.65	0.75	0.12	4736	604	4	0	6	0	0	logfile
✔	7Y5H	33620	2024-02-13	2022-06-17	3.72	4.13	3.68	4.1	0.002	0.39	0.0	0.04	12.51	0.00	2.030	3.76	0.00	0.5	99.5	0.0	0.06	0.63	0.77	1.35	4.1	0.003	0.62	0.0	0.04	15.09	0.00	2.000	7.00	2.46	1.7	98.3	0.0	1.58	1.08	0.66	0.81	1.36	4704	600	4	0	4	0	0	logfile
✔	7Y5S	33623	2024-02-15	2022-06-17	3.0	2.29	2.98	2.9	0.003	0.63	0.0	0.05	12.39	0.01	2.185	9.34	0.00	7.0	93.0	0.0	-2.10	0.75	0.70	2.12	1.8	0.003	0.71	0.0	0.05	15.68	0.00	2.207	14.01	3.14	9.1	90.9	0.0	-2.23	1.34	0.79	0.79	3.30	11535	1515	3	0	0	0	0	logfile
✔	8DD4	27334	2024-02-14	2022-06-17	3.1	3.27	3.15	3.2	0.003	0.65	0.0	0.04	14.94	0.00	2.219	8.36	0.00	2.8	97.0	0.2	0.21	0.74	0.75	2.15	3.2	0.003	0.65	0.0	0.04	16.65	0.00	2.250	12.83	1.73	3.0	96.9	0.2	0.42	1.61	0.76	0.79	2.28	10426	1255	4	0	0	21	0	logfile
✔	7Y4S	33606	2024-02-13	2022-06-16	3.5	3.72	3.47	3.8	0.004	0.74	0.0	0.04	12.74	0.01	2.373	5.20	0.46	2.9	97.1	0.0	1.47	0.69	0.77	3.18	3.8	0.004	0.60	0.0	0.04	15.04	0.00	2.220	10.18	3.69	2.2	97.8	0.0	2.64	1.58	0.72	0.78	2.53	4940	686	2	0	0	0	0	logfile
✔	8A63	15204	2024-02-20	2022-06-16	3.1	2.67	2.96	2.8	0.011	1.66	0.0	0.12	23.25	0.02	1.730	2.93	1.80	4.5	94.6	0.9	-2.32	0.69	0.81	3.65	2.7	0.004	0.64	0.0	0.04	23.62	0.00	1.835	10.06	3.60	4.2	95.7	0.1	-1.11	1.32	0.72	0.83	3.24	88390	2973	36	3022	170	0	0	logfile
✔	7Y5B	33615	2024-02-23	2022-06-16	4.4	4.11	4.45	4.0	0.002	0.56	0.0	0.04	15.01	0.00	1.888	7.15	0.00	2.7	97.3	0.0	1.29	0.79	0.81	—	4.0	0.002	0.56	0.0	0.04	14.69	0.00	1.951	7.67	0.00	2.8	97.2	0.0	1.34	0.23	0.79	0.81	—	35959	4838	26	0	22	0	0	logfile
✔	7Y5C	33616	2024-02-23	2022-06-16	4.7	4.41	4.64	4.1	0.003	0.60	0.0	0.04	14.53	0.00	1.916	9.62	0.00	2.6	97.4	0.0	1.08	0.77	0.73	—	4.1	0.003	0.61	0.0	0.04	14.04	0.00	1.859	10.77	0.00	3.1	96.9	0.0	1.04	1.19	0.77	0.75	—	35993	4851	26	0	11	0	0	logfile
✔	7Y5A	33614	2024-02-19	2022-06-16	3.5	4.25	3.40	3.6	0.003	0.60	0.0	0.04	15.01	0.00	1.986	6.54	0.04	2.7	97.3	0.0	0.45	0.90	0.85	1.38	3.6	0.002	0.56	0.0	0.04	16.01	0.00	1.942	7.30	1.82	2.8	97.2	0.0	0.62	0.28	0.90	0.86	1.40	23975	3164	12	0	10	0	0	logfile
✔	8A64	15205	2024-02-13	2022-06-16	4.6	7.63	4.66	4.6	0.008	0.86	0.0	0.06	10.17	0.01	2.112	20.40	0.00	5.8	94.2	0.0	-1.55	0.91	0.78	—	4.6	0.003	0.66	0.0	0.04	5.25	0.00	2.057	16.59	0.00	8.8	91.2	0.0	-0.64	1.80	0.91	0.78	—	6737	1354	4	0	3	0	0	logfile
✔	7Y4W	33608	2024-02-24	2022-06-16	3.67	4.29	3.79	4.1	0.002	0.62	0.0	0.04	14.25	0.00	2.137	8.86	0.00	8.1	91.4	0.4	0.01	0.79	0.81	1.11	4.1	0.002	0.63	0.0	0.04	15.85	0.00	2.125	9.53	1.28	7.8	91.7	0.4	0.06	1.16	0.79	0.81	1.06	42776	5385	14	0	4	0	0	logfile
✔	8A5Y	15199	2024-02-14	2022-06-16	4.9	5.07	4.78	4.9	0.004	0.88	4.0	0.05	13.25	0.00	1.998	18.51	0.05	3.9	95.8	0.4	0.86	0.85	0.76	—	4.9	0.003	0.68	0.0	0.04	13.58	0.00	2.123	15.31	0.00	4.5	95.3	0.2	0.59	0.66	0.86	0.78	—	57866	7213	18	0	3	0	0	logfile
✔	7Y53	33611	2024-02-24	2022-06-16	3.61	4.15	3.76	4.0	0.004	0.71	0.0	0.05	15.24	0.01	2.119	10.11	0.00	8.6	91.0	0.4	-0.33	0.77	0.78	1.33	4.0	0.003	0.67	0.0	0.04	16.36	0.00	2.141	9.87	0.91	7.2	92.5	0.3	-0.03	1.18	0.78	0.80	0.94	42966	5382	16	0	12	0	0	logfile

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