Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Y4S	33606	2024-02-13	2022-06-16	3.5	3.72	3.47	3.8	0.004	0.74	0.0	0.04	12.74	0.01	2.373	5.20	0.46	2.9	97.1	0.0	1.47	0.69	0.77	3.18	3.8	0.004	0.60	0.0	0.04	15.04	0.00	2.220	10.18	3.69	2.2	97.8	0.0	2.64	1.58	0.72	0.78	2.53	4940	686	2	0	0	0	0	logfile
✔	8A63	15204	2024-02-20	2022-06-16	3.1	2.67	2.96	2.8	0.011	1.66	0.0	0.12	23.25	0.02	1.730	2.93	1.80	4.5	94.6	0.9	-2.32	0.69	0.81	3.65	2.7	0.004	0.64	0.0	0.04	23.62	0.00	1.835	10.06	3.60	4.2	95.7	0.1	-1.11	1.32	0.72	0.83	3.24	88390	2973	36	3022	170	0	0	logfile
✔	8A64	15205	2024-02-13	2022-06-16	4.6	7.63	4.66	4.6	0.008	0.86	0.0	0.06	10.17	0.01	2.112	20.40	0.00	5.8	94.2	0.0	-1.55	0.91	0.78	—	4.6	0.003	0.66	0.0	0.04	5.25	0.00	2.057	16.59	0.00	8.8	91.2	0.0	-0.64	1.80	0.91	0.78	—	6737	1354	4	0	3	0	0	logfile
✔	8A5P	15180	2024-02-16	2022-06-15	3.4	4.19	3.47	3.6	0.011	1.65	3.0	0.10	17.87	0.02	1.816	2.29	0.90	3.3	96.6	0.1	-1.12	0.93	0.90	2.49	3.6	0.003	0.61	0.0	0.04	18.40	0.00	1.949	8.79	1.13	2.7	97.3	0.1	1.61	1.99	0.91	0.87	2.29	13937	1550	10	72	6	0	0	logfile
✔	8DC2	27320	2024-02-13	2022-06-15	2.99	2.48	3.03	3.1	0.003	0.54	0.0	0.04	19.79	0.00	2.216	11.65	0.16	3.0	97.0	0.0	1.17	0.82	0.83	2.49	3.0	0.004	0.64	0.0	0.04	20.97	0.00	2.113	12.09	2.25	3.9	96.1	0.0	0.68	0.37	0.83	0.85	2.73	7296	673	4	87	0	0	0	logfile
✔	8DBZ	27318	2024-02-13	2022-06-15	4.1	4.31	4.14	4.2	0.003	0.73	0.0	0.05	12.61	0.01	2.101	19.43	0.00	6.5	93.4	0.1	-1.42	0.62	0.62	—	4.2	0.004	0.77	0.0	0.05	13.09	0.01	2.132	19.16	0.15	8.3	91.6	0.1	-1.76	0.60	0.64	0.65	—	7960	1184	9	0	0	0	0	logfile
✔	8A5o	15179	2024-02-15	2022-06-15	3.2	3.27	3.09	3.2	0.016	1.87	2.0	0.10	14.34	0.01	1.981	1.08	0.72	3.8	96.0	0.2	-1.14	0.70	0.80	3.54	3.2	0.003	0.53	0.0	0.04	16.39	0.00	2.098	5.24	2.23	2.0	97.9	0.1	1.22	1.21	0.81	0.86	2.46	12571	1555	8	0	6	0	0	logfile
✔	8A5i	15175	2024-02-20	2022-06-15	2.3	1.92	2.20	2.2	0.011	1.72	1.0	0.12	23.17	0.02	1.234	3.32	2.48	5.4	93.2	1.4	-2.45	0.49	0.73	5.52	2.1	0.005	0.80	0.0	0.04	23.45	0.01	1.614	7.62	2.76	4.0	95.7	0.2	-0.46	0.86	0.68	0.84	5.33	89799	2973	56	3022	172	1381	0	logfile
✔	8DBE	27281	2024-02-16	2022-06-14	2.1	2.18	2.26	2.2	0.014	0.99	0.0	0.05	17.66	0.05	1.867	9.20	3.05	4.1	95.9	0.0	0.97	0.73	0.90	6.43	2.2	0.003	1.76	0.0	0.05	17.45	0.00	1.848	7.14	1.80	2.9	97.1	0.0	0.28	0.34	0.74	0.91	6.31	14982	1896	18	0	30	42	0	logfile
✔	8DBL	27289	2024-02-16	2022-06-14	2.4	2.55	2.52	2.5	0.011	0.82	0.0	0.06	16.54	0.00	1.885	7.60	2.67	3.3	96.7	0.0	0.14	0.67	0.83	4.21	2.5	0.003	0.50	0.0	0.05	16.05	0.00	1.961	8.45	2.80	2.6	97.4	0.0	0.66	0.40	0.67	0.86	4.01	14358	1854	18	0	24	12	0	logfile
✔	8DAR	27273	2024-02-21	2022-06-14	3.0	3.42	3.13	3.3	0.004	0.60	0.0	0.04	12.52	0.00	2.011	6.25	1.93	4.7	95.3	0.0	1.67	0.81	0.83	2.41	3.3	0.004	0.73	2.0	0.06	15.11	0.01	2.107	7.34	2.27	4.3	95.7	0.0	1.66	0.65	0.76	0.81	1.99	30157	3827	15	0	14	0	0	logfile
✔	8DBF	27282	2024-02-21	2022-06-14	2.2	2.32	2.21	2.3	0.014	0.99	0.0	0.05	17.66	0.05	1.866	9.33	3.08	4.1	95.9	0.0	0.97	0.74	0.87	5.47	2.3	0.004	1.58	0.0	0.05	17.69	0.00	1.843	5.70	2.30	2.4	97.6	0.0	0.31	1.14	0.75	0.89	5.78	29964	3792	36	0	60	84	0	logfile
✔	7Y45	33601	2024-02-18	2022-06-14	3.3	3.31	3.23	3.3	0.011	1.48	0.0	0.07	20.37	0.01	2.266	13.31	11.22	10.0	89.3	0.7	-3.83	0.72	0.79	2.30	3.3	0.003	0.62	0.0	0.04	16.65	0.00	2.196	6.81	1.94	3.0	97.0	0.0	0.70	1.36	0.74	0.85	2.20	22638	2654	22	0	78	6	0	logfile
✔	8A5A	15163	2024-02-15	2022-06-14	3.3	3.49	3.27	3.5	0.016	2.08	3.0	0.10	15.44	0.01	1.838	3.05	2.26	4.9	94.7	0.4	-2.22	0.56	0.66	3.59	3.5	0.003	0.54	0.0	0.04	16.12	0.00	2.007	5.41	2.20	2.0	97.9	0.1	1.07	1.22	0.74	0.83	2.16	13191	1629	8	0	6	0	0	logfile
✔	8DBQ	27298	2024-02-23	2022-06-14	4.0	4.31	3.95	4.0	0.005	0.89	1.0	0.05	14.27	0.01	1.911	2.02	1.26	1.6	98.3	0.0	-0.19	0.75	0.80	—	4.0	0.003	0.69	0.0	0.04	15.36	0.00	1.966	11.58	1.63	2.7	97.3	0.0	0.79	1.43	0.76	0.84	—	36737	4819	28	0	11	0	0	logfile
✔	8DBT	27306	2024-02-23	2022-06-14	3.1	3.70	2.98	3.1	0.010	1.26	3.0	0.07	14.82	0.01	1.833	2.63	0.65	2.8	97.2	0.0	-1.61	0.82	0.86	2.88	3.1	0.002	0.62	0.0	0.04	15.28	0.00	2.001	7.97	0.91	2.1	97.9	0.0	1.34	1.28	0.82	0.87	2.02	36937	4847	28	0	11	0	0	logfile
✔	7Y48	33603	2024-02-13	2022-06-14	2.85	2.13	2.80	2.0	0.010	0.84	0.0	0.04	13.51	0.01	2.271	9.22	0.90	2.3	97.7	0.0	1.13	0.51	0.74	2.02	2.0	0.004	0.56	0.0	0.04	15.64	0.00	2.356	3.80	1.80	1.4	98.6	0.0	1.78	0.39	0.53	0.79	1.93	4324	567	1	0	2	0	0	logfile
✔	8DBM	27290	2024-02-20	2022-06-14	2.4	2.48	2.47	2.5	0.011	0.82	0.0	0.06	16.54	0.00	1.884	7.64	2.67	3.3	96.7	0.0	0.14	0.68	0.82	4.58	2.4	0.003	0.52	0.0	0.05	16.54	0.00	1.927	9.60	3.66	2.3	97.7	0.0	0.68	0.43	0.70	0.87	4.31	28716	3708	36	0	48	24	0	logfile
✘	8DBi	27285	2024-02-16	2022-06-14	2.0	2.07	2.03	2.0	0.012	1.17	0.0	0.06	18.16	0.04	1.910	5.92	1.15	4.3	95.7	0.0	0.57	0.73	0.87	6.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14496	1854	18	0	30	12	0	logfile
✔	8DBC	27279	2024-02-16	2022-06-14	3.2	3.28	3.24	3.2	0.007	0.77	0.0	0.06	15.09	0.00	2.119	5.93	2.74	3.3	96.7	0.0	0.45	0.65	0.76	3.24	3.2	0.003	0.53	0.0	0.05	16.49	0.00	2.080	10.63	2.86	3.7	96.3	0.0	0.90	1.33	0.66	0.84	3.38	14232	1854	12	0	12	0	0	logfile

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