Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DBF	27282	2024-02-21	2022-06-14	2.2	2.32	2.21	2.3	0.014	0.99	0.0	0.05	17.66	0.05	1.866	9.33	3.08	4.1	95.9	0.0	0.97	0.74	0.87	5.47	2.3	0.004	1.58	0.0	0.05	17.69	0.00	1.843	5.70	2.30	2.4	97.6	0.0	0.31	1.14	0.75	0.89	5.78	29964	3792	36	0	60	84	0	logfile
✘	8DAN	27271	2024-02-17	2022-06-13	4.74	5.06	4.76	5.0	0.003	0.53	0.0	0.04	13.83	0.00	1.929	10.23	0.00	4.5	95.5	0.0	-0.75	0.65	0.60	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	68968	4472	24	0	12	0	33968	logfile
✔	8DAD	27270	2024-02-13	2022-06-13	3.85	4.05	3.91	4.0	0.004	0.83	1.0	0.05	17.77	0.01	2.238	16.32	0.63	5.0	95.0	0.0	-0.96	0.65	0.73	1.59	3.9	0.007	1.42	1.0	0.06	16.04	0.01	2.253	16.16	7.30	4.8	95.2	0.0	-1.20	0.46	0.65	0.74	2.00	3255	424	5	0	4	0	0	logfile
✔	7Y41	33599	2024-02-22	2022-06-13	4.1	4.02	3.07	3.4	0.004	0.63	0.0	0.03	24.41	0.01	1.204	15.20	0.00	4.4	95.6	0.0	-0.39	0.87	0.86	—	3.4	0.005	0.63	0.0	0.04	23.73	0.00	1.023	14.66	0.04	4.8	95.2	0.0	-0.45	1.47	0.88	0.87	—	97056	3529	46	3237	411	0	0	logfile
✔	7Y42	33600	2024-02-18	2022-06-13	3.45	3.86	3.62	3.8	0.006	0.84	0.0	0.05	14.43	0.01	2.121	11.84	0.59	9.5	90.5	0.0	-3.02	0.77	0.81	2.57	3.8	0.002	0.58	0.0	0.04	15.66	0.00	2.169	8.04	1.90	4.8	95.2	0.0	-1.82	0.41	0.78	0.82	1.85	23058	2904	6	0	30	0	0	logfile
✔	8DAQ	27272	2024-02-25	2022-06-13	4.35	4.68	4.29	4.5	0.003	0.56	0.0	0.05	13.37	0.00	1.857	13.50	0.00	5.0	95.0	0.0	-1.37	0.72	0.61	—	4.5	0.005	0.68	0.0	0.04	13.11	0.00	1.858	18.64	0.00	8.5	91.4	0.1	-1.69	0.89	0.80	0.79	—	52100	3412	16	0	8	0	25764	logfile
✔	8A4L	15148	2024-02-13	2022-06-12	2.68	2.73	1.77	2.8	0.004	0.65	0.0	0.05	13.43	0.00	2.385	10.11	0.00	0.0	100.0	0.0	-3.33	0.52	0.85	5.71	2.8	0.007	0.68	0.0	0.06	17.32	0.00	2.250	10.61	4.23	3.0	97.0	0.0	-3.68	1.56	0.53	0.87	5.60	7755	1125	15	0	0	0	0	logfile
✔	8D9X	27269	2024-02-15	2022-06-11	3.8	2.68	3.64	2.8	0.004	0.71	2.0	0.04	13.94	0.01	2.217	13.63	0.58	3.9	96.1	0.0	0.05	0.72	0.71	1.68	2.8	0.003	0.63	0.0	0.04	17.29	0.00	2.148	12.42	6.01	3.7	96.3	0.0	0.64	1.26	0.73	0.72	1.55	12670	1680	8	0	0	0	0	logfile
✔	7Y3E	33592	2024-02-16	2022-06-10	2.8	2.97	2.80	3.1	0.004	0.71	0.0	0.04	14.07	0.00	2.197	12.01	0.00	6.0	94.0	0.0	0.52	0.64	0.80	2.34	3.1	0.003	0.55	0.0	0.04	16.99	0.00	2.225	10.19	2.88	4.1	95.9	0.0	1.11	0.45	0.63	0.82	2.00	14572	1856	4	0	4	0	0	logfile
✔	8A43	15135	2024-02-21	2022-06-10	4.09	3.90	4.09	3.7	0.008	1.01	0.0	0.05	15.37	0.01	2.028	24.41	0.41	15.2	84.6	0.2	-4.94	0.78	0.68	—	3.7	0.003	0.71	0.0	0.04	14.48	0.00	2.025	13.21	0.00	8.4	91.6	0.0	-1.84	0.65	0.78	0.67	—	31109	3914	12	0	0	0	0	logfile
✔	7Y3G	33594	2024-02-13	2022-06-10	2.77	2.32	2.89	2.1	0.004	0.66	0.0	0.04	16.44	0.01	2.029	7.02	3.04	3.9	96.1	0.0	0.49	0.79	0.81	2.50	2.1	0.003	0.60	0.0	0.04	16.61	0.00	2.139	5.11	3.86	3.4	96.6	0.0	0.84	1.15	0.80	0.82	2.04	7864	1001	5	0	0	0	0	logfile
✔	7Y36	33590	2024-02-14	2022-06-10	2.8	3.76	2.72	3.7	0.007	0.73	0.0	0.05	12.89	0.00	2.152	7.06	0.00	4.2	95.8	0.0	-1.26	0.57	0.54	0.34	3.6	0.004	0.77	0.0	0.04	16.79	0.00	2.093	10.73	3.23	4.1	95.9	0.0	0.38	1.48	0.63	0.78	1.95	9206	1151	7	0	1	0	0	logfile
✔	8D9M	27266	2024-02-16	2022-06-10	4.2	3.57	4.20	3.3	0.007	1.02	0.0	0.05	16.46	0.01	1.684	31.57	0.45	17.2	82.8	0.0	-2.61	0.83	0.80	—	3.2	0.006	0.94	0.0	0.05	16.66	0.00	1.341	19.75	0.00	14.7	85.3	0.0	-2.92	0.58	0.83	0.80	—	15967	1806	7	0	56	0	0	logfile
✔	8D9L	27265	2024-02-13	2022-06-10	4.04	5.24	4.18	4.5	0.002	0.44	0.0	0.03	16.63	0.00	2.250	7.25	0.43	1.8	98.2	0.0	1.09	0.89	0.80	—	4.4	0.005	0.61	0.0	0.04	17.39	0.00	2.110	20.63	0.00	4.1	95.9	0.0	0.17	0.66	0.90	0.84	—	5757	553	4	65	1	0	0	logfile
✔	7Y38	33591	2024-02-13	2022-06-10	2.8	3.48	2.94	3.3	0.010	0.72	0.0	0.04	15.47	0.00	2.113	3.70	0.04	3.8	96.2	0.1	-0.63	0.78	0.83	2.85	3.3	0.004	0.64	0.0	0.04	15.89	0.00	2.003	4.13	0.58	5.1	94.9	0.1	-0.51	0.33	0.79	0.87	2.55	53135	6704	27	3	36	0	0	logfile
✔	8D9N	27267	2024-02-13	2022-06-10	4.4	4.74	3.88	34.0	0.003	0.60	0.0	0.04	13.21	0.00	2.107	2.77	0.38	5.8	94.2	0.0	-0.81	0.28	-0.07	—	20.0	0.002	0.66	0.0	0.04	13.37	0.00	2.199	4.56	0.00	5.3	94.7	0.0	0.51	0.56	0.36	-0.05	—	7186	902	2	0	0	0	0	logfile
✔	8D9K	27264	2024-02-13	2022-06-10	3.72	4.58	3.85	4.1	0.001	0.37	0.0	0.03	16.35	0.00	2.270	6.46	0.64	1.9	98.1	0.0	1.53	0.89	0.84	2.42	4.1	0.003	0.50	0.0	0.04	17.22	0.00	2.142	11.42	2.14	2.1	97.9	0.0	0.75	0.56	0.90	0.86	1.97	5708	546	3	65	0	0	0	logfile
✘	7Y3F	33593	2024-02-23	2022-06-10	2.62	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39463	3158	37	0	1155	26	0	logfile
✘	8D9F	27260	2024-02-16	2022-06-09	2.71	3.74	2.92	3.4	0.010	0.94	0.0	0.06	15.70	0.01	2.015	10.10	0.06	3.3	96.6	0.1	0.50	0.82	0.83	3.13	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16163	1912	4	33	4	0	0	logfile
✔	8A3T	15123	2024-02-14	2022-06-09	3.5	4.11	4.11	4.0	0.004	0.75	0.0	0.04	14.99	0.00	1.542	18.91	0.10	3.9	95.9	0.2	0.49	0.80	0.75	0.73	4.0	0.003	0.65	0.0	0.04	16.00	0.00	2.129	13.20	2.23	4.1	95.7	0.1	1.19	0.50	0.80	0.76	0.62	61351	7661	19	0	3	0	0	logfile

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