Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Y26	33586	2024-02-13	2022-06-09	3.3	3.67	3.39	3.7	0.003	0.57	0.0	0.04	12.62	0.00	2.203	4.71	0.00	3.0	97.0	0.0	0.69	0.66	0.80	3.02	3.6	0.005	0.67	0.0	0.04	14.87	0.00	2.043	4.84	1.98	3.8	96.1	0.1	0.28	0.40	0.67	0.82	2.73	8014	1111	6	0	2	0	0	logfile
✔	7Y24	33585	2024-02-14	2022-06-09	3.25	3.61	3.34	3.6	0.004	0.68	2.0	0.06	12.92	0.00	2.208	12.97	0.37	3.0	97.0	0.0	0.69	0.61	0.73	1.83	3.5	0.003	0.63	0.0	0.04	15.22	0.00	2.125	12.66	2.96	2.9	97.1	0.0	0.68	0.45	0.62	0.76	1.62	8229	1127	6	0	2	0	0	logfile
✔	8D96	27256	2024-02-14	2022-06-09	3.35	4.21	3.32	3.9	0.002	0.58	0.0	0.04	17.81	0.00	1.836	7.87	0.11	2.5	97.3	0.2	2.00	0.89	0.85	1.96	3.8	0.002	0.48	0.0	0.04	17.81	0.00	1.348	5.78	1.68	3.0	96.8	0.2	2.02	0.42	0.91	0.89	1.87	9203	1056	6	30	4	0	0	logfile
✔	7Y35	33588	2024-02-14	2022-06-09	2.9	2.79	2.85	3.0	0.009	0.80	0.0	0.05	12.99	0.01	2.217	5.09	0.10	4.0	96.0	0.0	-1.37	0.84	0.82	3.23	3.0	0.004	0.71	0.0	0.04	16.85	0.00	2.133	9.70	2.84	2.8	97.2	0.0	0.78	1.28	0.85	0.85	3.00	9191	1150	6	0	1	0	0	logfile
✔	8A40	15129	2024-02-22	2022-06-09	3.0	3.43	3.02	3.2	0.004	0.72	0.0	0.05	15.67	0.01	2.105	5.03	0.00	3.6	96.4	0.0	-0.65	0.86	0.88	2.91	3.2	0.003	0.62	0.0	0.04	17.02	0.00	1.999	8.52	0.87	3.8	96.2	0.0	0.78	0.43	0.85	0.89	2.68	34177	4066	20	85	14	0	0	logfile
✔	7Y1Y	33575	2024-02-23	2022-06-09	3.3	3.62	3.45	3.4	0.007	0.92	0.0	0.07	13.43	0.00	1.930	14.69	2.16	7.1	91.0	1.9	-3.28	0.62	0.54	0.51	3.5	0.007	0.81	0.0	0.05	15.41	0.00	1.975	10.39	2.33	7.2	92.5	0.3	-1.14	1.99	0.76	0.80	1.50	39556	4786	50	0	104	0	0	logfile
✔	8D9D	27258	2024-02-17	2022-06-09	3.59	4.41	3.63	3.9	0.003	0.66	0.0	0.04	15.76	0.01	2.101	7.58	0.19	3.6	96.2	0.3	0.16	0.87	0.79	1.53	4.0	0.002	0.55	0.0	0.04	16.64	0.00	1.362	8.31	0.86	3.2	96.6	0.2	0.91	1.70	0.91	0.85	1.28	19409	2312	10	30	8	0	0	logfile
✔	8D9G	27261	2024-02-17	2022-06-09	2.57	2.97	2.74	2.9	0.010	0.86	0.0	0.05	18.99	0.01	2.036	11.14	5.96	7.0	92.8	0.2	-2.52	0.72	0.78	2.47	2.9	0.003	0.59	0.0	0.04	19.24	0.00	2.148	8.08	1.91	3.9	96.1	0.0	0.62	1.69	0.67	0.79	2.87	17148	1965	5	59	4	0	0	logfile
✔	7Y27	33587	2024-02-14	2022-06-09	3.48	3.96	3.59	3.9	0.012	0.63	0.0	0.06	13.37	0.00	2.204	5.95	0.00	3.7	96.2	0.1	0.16	0.67	0.81	2.45	4.0	0.003	0.57	0.0	0.04	14.87	0.00	2.202	5.24	2.85	3.6	96.4	0.0	0.52	0.93	0.67	0.82	2.03	8184	1137	7	0	1	0	0	logfile
✔	8D97	27257	2024-02-16	2022-06-09	3.8	3.96	3.72	3.8	0.004	0.64	0.0	0.04	17.28	0.00	2.113	8.76	0.00	5.1	94.9	0.0	-2.43	0.87	0.87	2.06	3.8	0.002	0.51	0.0	0.04	17.90	0.00	2.199	7.80	0.85	3.5	96.5	0.0	-0.19	0.41	0.87	0.86	1.95	13874	1600	3	42	4	0	0	logfile
✔	7Y1Z	33576	2024-02-23	2022-06-09	3.4	3.68	3.49	3.6	0.007	0.89	1.0	0.07	13.26	0.00	1.926	12.96	1.54	6.8	91.6	1.7	-3.20	0.57	0.52	0.75	3.7	0.003	0.71	0.0	0.04	15.41	0.00	2.148	7.96	2.14	5.5	94.3	0.2	-1.08	1.60	0.68	0.75	1.53	39583	4786	50	0	104	0	0	logfile
✔	7Y21	33578	2024-02-23	2022-06-09	2.8	3.03	2.89	3.0	0.008	0.91	0.0	0.07	13.99	0.01	1.848	7.34	3.40	6.4	92.4	1.2	-3.48	0.53	0.50	1.34	3.0	0.008	0.92	0.0	0.06	16.13	0.01	2.010	10.71	3.21	7.8	92.0	0.1	-1.96	1.44	0.64	0.71	1.84	39547	4786	50	0	104	0	0	logfile
✔	7Y20	33577	2024-02-22	2022-06-09	3.8	4.39	4.07	4.2	0.008	0.91	0.0	0.07	12.64	0.00	2.034	11.19	1.31	6.5	91.8	1.7	-2.99	0.64	0.56	1.69	4.2	0.003	0.69	0.0	0.04	14.44	0.00	2.133	8.22	1.75	4.9	94.8	0.2	-0.59	1.46	0.73	0.76	1.57	34269	4153	43	0	93	0	0	logfile
✔	7Y1J	33563	2024-02-14	2022-06-08	3.0	3.08	2.83	3.1	0.004	0.51	0.0	0.04	12.14	0.00	1.971	5.91	0.69	0.8	99.2	0.0	2.20	0.67	0.83	3.67	3.1	0.004	0.49	0.0	0.04	15.04	0.00	1.913	6.18	1.97	1.2	98.8	0.0	2.18	0.42	0.71	0.86	3.33	9487	1204	1	0	5	0	0	logfile
✔	7Y1T	33572	2024-02-13	2022-06-08	3.24	3.67	3.31	3.5	0.003	0.59	0.0	0.09	16.88	0.00	1.998	8.09	0.00	4.1	95.9	0.0	-0.76	0.73	0.75	1.76	3.5	0.004	0.68	0.0	0.05	15.47	0.00	2.093	11.06	2.68	5.5	94.5	0.0	-0.74	0.59	0.74	0.79	2.53	8112	1030	10	0	24	0	0	logfile
✔	8D8L	27251	2024-02-20	2022-06-08	2.6	2.27	2.59	2.5	0.004	0.67	0.0	0.34	19.37	0.01	1.914	2.68	0.00	2.7	97.3	0.0	0.47	0.69	0.81	4.16	2.4	0.004	0.77	0.0	0.11	20.10	0.00	1.889	7.37	2.25	2.3	97.7	0.0	1.01	1.12	0.70	0.86	3.85	87007	6734	41	1506	168	3	0	logfile
✔	7Y1M	33566	2024-02-14	2022-06-08	3.57	3.80	3.54	3.7	0.004	0.53	0.0	0.04	12.73	0.00	2.234	8.36	0.33	2.1	97.9	0.0	2.52	0.69	0.85	1.58	3.8	0.003	0.60	0.0	0.04	14.61	0.00	1.985	7.13	2.85	1.8	98.2	0.0	2.18	0.45	0.69	0.85	0.96	8957	1166	1	0	5	0	0	logfile
✔	7Y1F	33562	2024-02-14	2022-06-08	3.3	3.13	3.30	3.3	0.007	1.12	0.0	0.06	13.79	0.01	2.215	9.10	0.00	6.7	93.3	0.0	-2.25	0.55	0.71	3.16	3.3	0.004	0.73	0.0	0.04	15.87	0.00	2.131	14.90	3.14	6.3	93.6	0.1	-0.46	1.18	0.55	0.72	2.12	8691	1131	6	0	0	0	0	logfile
✔	8D8Q	27254	2024-02-13	2022-06-08	4.2	3.68	34.06	3.7	0.012	1.23	0.0	0.05	11.02	0.01	2.139	1.66	0.53	1.5	98.3	0.2	2.20	0.67	0.74	—	3.6	0.003	0.69	0.0	0.04	12.90	0.00	2.189	12.92	0.00	4.9	95.1	0.0	-0.62	1.01	0.67	0.75	—	5202	669	6	0	1	0	0	logfile
✔	8A3L	15116	2024-02-26	2022-06-08	3.42	3.28	3.30	3.3	0.008	0.76	2.0	0.05	23.47	0.02	1.607	10.99	2.12	7.5	91.9	0.6	-0.87	0.78	0.80	2.45	3.3	0.003	0.66	0.0	0.03	23.25	0.01	1.746	10.29	3.39	5.4	94.5	0.1	-0.63	1.05	0.84	0.85	2.26	147640	5876	65	4722	316	0	0	logfile

• ← previous
• Page 190 of 633
• next →