Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8D8o	27253	2024-02-15	2022-06-08	3.35	3.59	3.32	3.5	0.004	0.57	0.0	0.04	15.92	0.01	2.133	7.67	0.16	5.9	94.1	0.0	-0.78	0.73	0.82	2.46	3.5	0.003	0.56	0.0	0.04	16.34	0.00	2.217	7.71	3.41	4.8	95.2	0.0	-0.76	0.87	0.73	0.83	2.32	11819	1536	2	0	1	0	0	logfile
✔	8D8L	27251	2024-02-20	2022-06-08	2.6	2.27	2.59	2.5	0.004	0.67	0.0	0.34	19.37	0.01	1.914	2.68	0.00	2.7	97.3	0.0	0.47	0.69	0.81	4.16	2.4	0.004	0.77	0.0	0.11	20.10	0.00	1.889	7.37	2.25	2.3	97.7	0.0	1.01	1.12	0.70	0.86	3.85	87007	6734	41	1506	168	3	0	logfile
✔	8D8Q	27254	2024-02-13	2022-06-08	4.2	3.68	34.06	3.7	0.012	1.23	0.0	0.05	11.02	0.01	2.139	1.66	0.53	1.5	98.3	0.2	2.20	0.67	0.74	—	3.6	0.003	0.69	0.0	0.04	12.90	0.00	2.189	12.92	0.00	4.9	95.1	0.0	-0.62	1.01	0.67	0.75	—	5202	669	6	0	1	0	0	logfile
✔	7Y1J	33563	2024-02-14	2022-06-08	3.0	3.08	2.83	3.1	0.004	0.51	0.0	0.04	12.14	0.00	1.971	5.91	0.69	0.8	99.2	0.0	2.20	0.67	0.83	3.67	3.1	0.004	0.49	0.0	0.04	15.04	0.00	1.913	6.18	1.97	1.2	98.8	0.0	2.18	0.42	0.71	0.86	3.33	9487	1204	1	0	5	0	0	logfile
✔	7Y1L	33565	2024-02-14	2022-06-08	3.73	3.98	3.74	3.9	0.005	0.59	0.0	0.04	12.44	0.00	2.202	8.44	1.03	1.8	98.2	0.0	2.57	0.64	0.85	1.27	3.9	0.004	0.61	0.0	0.04	14.46	0.00	1.949	9.63	2.40	1.9	98.1	0.0	2.45	0.45	0.65	0.85	0.85	8955	1189	1	0	5	0	0	logfile
✔	7Y1T	33572	2024-02-13	2022-06-08	3.24	3.67	3.31	3.5	0.003	0.59	0.0	0.09	16.88	0.00	1.998	8.09	0.00	4.1	95.9	0.0	-0.76	0.73	0.75	1.76	3.5	0.004	0.68	0.0	0.05	15.47	0.00	2.093	11.06	2.68	5.5	94.5	0.0	-0.74	0.59	0.74	0.79	2.53	8112	1030	10	0	24	0	0	logfile
✔	7Y1K	33564	2024-02-14	2022-06-08	3.8	4.04	3.87	4.0	0.005	0.61	0.0	0.04	12.89	0.00	2.011	7.48	2.96	1.7	98.3	0.0	0.96	0.66	0.82	2.35	4.0	0.002	0.63	0.0	0.04	14.59	0.00	1.950	9.64	3.08	2.0	98.0	0.0	2.03	1.03	0.65	0.81	1.54	8510	1164	1	0	5	0	0	logfile
✔	7Y1F	33562	2024-02-14	2022-06-08	3.3	3.13	3.30	3.3	0.007	1.12	0.0	0.06	13.79	0.01	2.215	9.10	0.00	6.7	93.3	0.0	-2.25	0.55	0.71	3.16	3.3	0.004	0.73	0.0	0.04	15.87	0.00	2.131	14.90	3.14	6.3	93.6	0.1	-0.46	1.18	0.55	0.72	2.12	8691	1131	6	0	0	0	0	logfile
✔	7Y1R	33571	2024-02-14	2022-06-08	4.01	2.49	4.09	3.9	0.003	0.70	0.0	0.04	17.91	0.00	2.227	8.79	0.00	5.8	94.2	0.0	-2.79	0.59	0.55	—	2.1	0.003	0.78	0.0	0.04	13.19	0.00	2.160	11.89	0.00	7.8	92.1	0.1	-2.62	0.70	0.63	0.62	—	8565	1041	11	0	20	0	0	logfile
✔	8D8R	27255	2024-02-13	2022-06-08	4.1	4.18	1.95	4.1	0.011	1.25	0.0	0.06	10.92	0.01	2.512	1.08	0.00	2.1	97.9	0.0	1.96	0.59	0.61	—	4.1	0.003	0.75	0.0	0.05	13.17	0.00	2.287	14.13	0.28	7.6	92.4	0.0	-0.57	1.90	0.62	0.66	—	3323	425	3	0	1	0	0	logfile
✔	8D7H	27230	2024-02-15	2022-06-07	3.4	3.69	3.48	3.6	0.003	0.53	0.0	0.04	12.37	0.00	2.291	4.59	1.06	3.9	96.1	0.0	-1.37	0.68	0.76	1.60	3.6	0.003	0.66	0.0	0.05	13.79	0.00	2.229	5.92	2.71	6.7	93.3	0.0	0.28	0.59	0.71	0.84	2.02	12540	1526	22	0	32	0	0	logfile
✘	8D7R	27231	2024-02-14	2022-06-07	3.9	4.13	3.91	4.0	0.003	0.54	0.0	0.04	15.03	0.00	2.345	5.62	0.00	8.1	91.9	0.0	-3.25	0.60	0.56	0.88	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9627	1167	12	0	16	0	0	logfile
✔	8D82	27244	2024-02-17	2022-06-07	3.22	3.52	3.30	3.4	0.003	0.52	0.0	0.04	19.91	0.00	2.239	6.01	0.95	4.6	95.4	0.0	-2.63	0.69	0.76	1.43	3.4	0.003	0.64	0.0	0.04	15.77	0.00	2.171	7.34	3.59	5.9	94.1	0.0	-0.86	1.07	0.72	0.83	2.20	17366	2108	20	0	38	0	0	logfile
✔	8D74	27227	2024-02-14	2022-06-07	3.03	3.35	3.11	3.3	0.003	0.51	0.0	0.04	16.07	0.00	2.184	5.51	0.85	5.5	94.5	0.0	-2.86	0.68	0.79	2.02	3.3	0.004	0.69	0.0	0.05	15.30	0.00	2.106	6.98	4.25	8.7	91.2	0.1	-1.30	0.56	0.71	0.85	2.57	9639	1163	12	0	18	0	0	logfile
✔	8D7Y	27238	2024-02-14	2022-06-07	3.4	3.72	3.45	3.6	0.003	0.58	0.0	0.05	13.76	0.00	2.276	11.11	0.72	6.8	92.6	0.6	-2.04	0.76	0.77	2.82	3.6	0.004	0.57	0.0	0.04	14.80	0.00	2.234	7.14	1.93	7.3	92.5	0.1	-1.78	0.36	0.80	0.83	2.80	10086	1484	2	0	1	0	0	logfile
✔	8D7E	27228	2024-02-16	2022-06-07	2.93	3.17	2.98	3.1	0.002	0.49	0.0	0.04	11.95	0.00	2.257	5.40	0.70	2.9	97.1	0.0	-2.25	0.67	0.81	3.32	3.1	0.003	0.60	0.0	0.04	15.46	0.00	2.218	5.63	4.50	4.2	95.8	0.0	0.27	1.57	0.67	0.86	3.28	8959	1143	9	0	8	0	0	logfile
✘	8D85	27247	2024-02-13	2022-06-07	3.81	4.26	4.04	4.2	0.003	0.53	0.0	0.04	19.55	0.00	2.357	4.77	0.00	4.1	95.8	0.1	-2.45	0.68	0.64	0.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7093	865	10	0	11	0	0	logfile
✔	8A3B	15110	2024-02-16	2022-06-07	3.1	2.31	2.85	2.9	0.003	0.55	0.0	0.03	14.17	0.00	2.091	4.59	0.00	0.9	99.1	0.0	2.21	0.73	0.72	2.28	2.1	0.003	0.54	0.0	0.04	16.19	0.00	2.180	6.76	1.88	1.5	98.5	0.0	2.39	0.46	0.74	0.77	2.10	14448	1792	7	0	0	0	0	logfile
✔	8D80	27241	2024-02-15	2022-06-07	3.6	3.97	3.35	3.6	0.004	0.63	0.0	0.05	15.29	0.01	2.212	8.72	0.75	5.7	93.7	0.6	-1.72	0.89	0.85	3.20	3.6	0.005	0.60	0.0	0.04	15.72	0.00	2.128	8.30	1.51	6.4	93.4	0.3	-1.51	0.53	0.89	0.85	3.04	11230	1542	5	0	3	0	0	logfile
✔	8D7X	27237	2024-02-14	2022-06-07	3.4	3.65	3.41	3.5	0.006	0.65	1.0	0.05	13.45	0.00	2.219	8.94	0.60	8.6	91.2	0.2	-2.20	0.74	0.76	3.37	3.5	0.003	0.55	0.0	0.04	14.64	0.00	2.212	7.39	1.92	6.6	93.3	0.1	-1.73	0.30	0.82	0.85	2.50	10108	1484	2	0	1	0	0	logfile

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