Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8TP3	41465	2024-02-15	2023-08-04	3.6	3.91	3.62	3.9	0.020	1.72	0.0	0.11	10.55	0.01	2.336	0.86	0.07	1.7	98.3	0.0	0.78	0.72	0.73	2.35	3.9	0.004	0.73	0.0	0.05	15.00	0.00	2.164	13.17	2.77	2.8	97.2	0.0	0.07	1.48	0.73	0.73	1.77	13691	1700	14	0	20	0	0	logfile
✔	8Q3F	18126	2024-02-13	2023-08-04	3.77	4.64	3.79	4.2	0.005	1.12	0.0	0.07	15.05	0.01	2.339	3.11	0.00	3.1	96.9	0.0	-5.05	0.90	0.81	0.79	4.2	0.003	0.60	0.0	0.04	15.72	0.00	2.283	7.13	0.59	2.8	97.2	0.0	1.18	0.93	0.90	0.82	0.86	4599	578	1	0	0	0	0	logfile
✔	8KAE	37008	2024-02-14	2023-08-03	3.18	3.46	3.28	3.5	0.013	1.08	0.0	0.06	13.24	0.01	2.147	7.23	0.00	7.2	92.8	0.0	-1.16	0.61	0.81	3.21	3.5	0.003	0.59	0.0	0.04	14.48	0.00	2.217	5.92	2.53	4.2	95.8	0.0	0.85	1.16	0.62	0.82	2.09	8440	1105	6	0	1	0	0	logfile
✔	8ToF	41449	2024-02-20	2023-08-03	2.8	3.39	2.88	3.1	0.010	1.00	3.0	0.04	24.37	0.01	1.828	11.53	3.09	6.6	93.0	0.5	0.08	0.78	0.70	2.65	3.1	0.003	0.66	0.0	0.04	24.22	0.00	2.047	10.64	2.13	5.7	94.1	0.3	0.67	0.46	0.80	0.83	2.31	29102	2689	20	352	15	0	0	logfile
✔	8KB5	37070	2024-02-15	2023-08-03	2.26133	2.35	2.23	2.3	0.007	0.98	0.0	0.05	28.08	0.01	2.377	0.00	0.00	0.7	99.3	0.0	2.15	0.79	0.85	3.73	2.3	0.003	0.58	0.0	0.03	28.28	0.00	2.139	4.23	1.43	1.1	98.9	0.0	2.93	0.23	0.78	0.85	3.55	11953	758	10	290	0	0	0	logfile
✔	8Q2L	18112	2024-02-13	2023-08-02	2.2	2.31	2.29	2.3	0.013	2.22	2.0	0.22	14.08	0.01	2.506	1.04	0.00	1.9	98.1	0.0	-2.11	0.40	0.87	5.99	2.3	0.005	0.66	0.0	0.05	19.41	0.00	2.466	3.42	2.38	1.4	98.6	0.0	-1.82	1.25	0.41	0.93	7.18	3300	432	6	0	0	0	0	logfile
✔	8Q2K	18111	2024-02-13	2023-08-02	2.88	2.65	2.79	2.8	0.011	1.80	0.0	0.07	10.49	0.01	2.538	0.43	0.00	4.1	95.9	0.0	-1.81	0.28	0.75	5.37	2.8	0.003	0.51	0.0	0.05	17.02	0.00	2.146	0.85	0.51	0.0	100.0	0.0	-1.78	3.23	0.38	0.85	4.69	7032	450	6	0	0	0	3588	logfile
✔	8Q2J	18109	2024-02-13	2023-08-02	2.23	2.02	2.19	2.2	0.011	1.72	0.0	0.08	11.08	0.01	2.490	0.14	0.00	1.8	98.2	0.0	-1.62	0.29	0.75	7.51	2.2	0.004	0.61	0.0	0.05	17.29	0.00	2.248	4.07	1.50	0.4	99.6	0.0	-1.99	0.90	0.44	0.90	7.16	3507	462	6	0	0	0	0	logfile
✔	8KA8	37006	2024-02-13	2023-08-02	2.96	2.36	3.03	2.2	0.003	0.64	0.0	0.04	13.59	0.00	2.017	5.93	0.15	6.2	93.8	0.0	-0.68	0.79	0.79	3.28	2.1	0.004	0.69	0.0	0.04	15.96	0.01	2.144	6.72	2.91	7.5	92.5	0.0	-0.29	0.62	0.81	0.84	3.34	6481	790	5	0	7	0	0	logfile
✔	8K9G	36986	2024-02-16	2023-08-01	3.49	4.85	3.52	3.8	0.005	0.85	0.0	0.06	21.18	0.01	2.201	10.24	0.25	6.5	93.5	0.0	-1.99	0.77	0.60	0.80	3.9	0.003	0.62	0.0	0.04	20.90	0.00	2.122	17.16	2.22	5.0	95.0	0.0	-0.60	0.65	0.92	0.81	0.79	16759	1811	8	90	0	0	0	logfile
✔	8Q27	18070	2024-02-13	2023-08-01	2.02	1.98	1.92	2.0	0.011	1.74	0.0	0.08	11.92	0.01	2.517	0.00	1.27	2.3	97.7	0.0	-1.63	0.21	0.69	8.02	2.0	0.003	0.55	0.0	0.05	15.86	0.00	2.283	1.43	0.00	2.7	97.3	0.0	-1.21	0.87	0.34	0.88	7.45	7002	453	6	0	0	0	3567	logfile
✔	8TN9	41411	2024-02-15	2023-08-01	3.05	3.46	—	3.3	0.003	0.67	0.0	0.05	14.36	0.00	2.022	10.85	0.25	10.0	90.0	0.0	-2.35	0.78	0.78	2.58	3.3	0.003	0.68	0.0	0.05	15.92	0.00	2.153	9.76	2.29	8.8	91.2	0.0	-2.46	0.43	0.78	0.78	2.37	11145	1368	2	0	4	0	0	logfile
✔	8TMA	41382	2024-02-13	2023-07-29	3.2	3.37	3.02	3.3	0.004	0.68	0.0	0.05	12.06	0.01	2.324	3.32	0.00	4.0	95.8	0.2	-1.56	0.79	0.82	3.66	3.3	0.002	0.58	0.0	0.04	14.87	0.00	2.170	5.37	1.69	3.5	96.5	0.0	0.11	1.71	0.80	0.83	3.04	3254	410	3	0	0	0	0	logfile
✔	8K8E	36948	2024-02-15	2023-07-29	2.6	3.29	2.56	3.0	0.005	0.68	0.0	0.05	16.31	0.00	2.218	8.92	1.33	5.7	94.3	0.0	0.45	0.69	0.87	2.88	2.9	0.006	0.68	0.0	0.05	15.06	0.00	2.021	7.44	2.48	5.6	94.4	0.0	0.81	0.38	0.70	0.88	3.13	10716	1324	10	0	17	0	0	logfile
✔	8Q0N	18056	2024-02-16	2023-07-28	4.2	4.02	3.99	4.1	0.002	0.48	0.0	0.04	13.78	0.00	2.181	5.46	0.00	1.7	98.3	0.0	1.28	0.56	0.43	—	3.9	0.003	0.59	0.0	0.04	14.26	0.00	1.972	11.36	0.00	4.0	96.0	0.0	0.13	1.04	0.69	0.65	—	15917	1009	4	0	2	0	7910	logfile
✔	8TLM	41370	2024-02-13	2023-07-27	2.9	3.41	2.91	3.3	0.003	0.49	0.0	0.04	11.71	0.00	2.057	4.62	0.00	2.8	97.2	0.0	1.36	0.71	0.81	3.76	3.3	0.003	0.60	0.0	0.04	15.24	0.00	2.298	6.10	2.63	2.6	97.4	0.0	1.12	1.03	0.71	0.83	3.39	5400	696	3	0	0	0	0	logfile
✔	8TM1	41374	2024-02-13	2023-07-27	2.79	2.95	2.77	3.0	0.003	0.67	0.0	0.05	12.21	0.01	2.313	2.95	0.00	3.4	96.6	0.0	-1.40	0.76	0.81	4.05	2.9	0.003	0.64	0.0	0.04	16.66	0.00	2.215	4.53	3.05	4.9	95.1	0.0	-0.66	1.18	0.79	0.86	3.93	4536	569	4	0	0	0	0	logfile
✔	8K7A	36936	2024-02-14	2023-07-26	4.2	6.79	4.47	6.7	0.007	1.46	2.0	0.07	14.73	0.01	1.638	7.00	0.30	6.0	93.3	0.7	-3.62	0.70	0.75	—	6.7	0.003	0.75	0.0	0.04	13.90	0.00	1.865	18.68	0.00	6.4	93.3	0.3	-0.10	1.03	0.71	0.81	—	8918	1126	4	0	4	0	0	logfile
✔	8PS8	17846	2024-02-17	2023-07-26	4.0	3.56	3.98	3.2	0.016	2.11	0.0	0.08	6.12	0.01	2.328	1.40	0.00	6.7	93.1	0.2	-2.93	0.69	0.76	—	3.2	0.003	0.66	0.0	0.04	4.91	0.00	2.163	3.68	0.00	5.8	94.2	0.0	-0.68	0.68	0.67	0.78	—	18674	3788	3	0	0	0	0	logfile
✔	8PYS	18031	2024-02-16	2023-07-26	2.7	2.59	2.72	2.7	0.003	0.49	0.0	0.04	12.64	0.00	2.388	8.00	0.00	2.3	97.7	0.0	2.07	0.77	0.86	4.66	2.7	0.003	0.48	0.0	0.04	16.13	0.00	2.138	6.21	1.32	1.3	98.7	0.0	1.76	1.90	0.76	0.87	4.05	122040	15900	60	0	0	0	0	logfile

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