Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8K7C	36938	2024-02-14	2023-07-26	3.9	4.56	4.09	4.5	0.009	0.96	0.0	0.05	13.87	0.01	1.837	13.49	0.21	8.8	91.2	0.0	-1.19	0.66	0.84	2.01	4.5	0.002	0.61	0.0	0.04	16.18	0.00	1.962	6.13	2.46	4.9	95.1	0.0	0.50	0.45	0.63	0.82	1.43	9271	1174	4	0	6	0	0	logfile
✔	8PS8	17846	2024-02-17	2023-07-26	4.0	3.56	3.98	3.2	0.016	2.11	0.0	0.08	6.12	0.01	2.328	1.40	0.00	6.7	93.1	0.2	-2.93	0.69	0.76	—	3.2	0.003	0.66	0.0	0.04	4.91	0.00	2.163	3.68	0.00	5.8	94.2	0.0	-0.68	0.68	0.67	0.78	—	18674	3788	3	0	0	0	0	logfile
✔	8K7A	36936	2024-02-14	2023-07-26	4.2	6.79	4.47	6.7	0.007	1.46	2.0	0.07	14.73	0.01	1.638	7.00	0.30	6.0	93.3	0.7	-3.62	0.70	0.75	—	6.7	0.003	0.75	0.0	0.04	13.90	0.00	1.865	18.68	0.00	6.4	93.3	0.3	-0.10	1.03	0.71	0.81	—	8918	1126	4	0	4	0	0	logfile
✔	8TKG	41350	2024-02-25	2023-07-25	2.5	2.23	—	2.6	0.002	0.49	0.0	0.04	17.40	0.00	0.701	5.96	0.24	2.0	98.0	0.0	2.96	0.74	0.79	2.06	2.6	0.004	0.55	1.0	0.04	16.74	0.00	1.490	7.32	1.14	2.5	97.5	0.0	2.62	0.52	0.74	0.83	2.98	145336	8840	12	0	44	640	71936	logfile
✔	8TKH	41351	2024-02-24	2023-07-25	3.5	4.26	3.69	3.9	0.002	0.44	0.0	0.04	15.91	0.00	0.530	13.82	0.09	1.3	98.7	0.0	3.61	0.80	0.74	1.44	3.9	0.004	0.60	0.0	0.04	15.62	0.00	1.887	10.39	1.99	2.7	97.3	0.0	2.38	2.06	0.83	0.84	1.39	145816	9072	8	0	12	0	72844	logfile
✔	8K6L	36922	2024-02-13	2023-07-25	2.92	3.27	2.96	3.2	0.005	1.00	1.0	0.09	17.75	0.02	2.297	6.71	2.17	5.0	95.0	0.0	-2.44	0.63	0.80	2.79	3.2	0.003	0.58	0.0	0.05	15.19	0.00	2.187	2.56	1.69	3.2	96.8	0.0	1.55	0.58	0.60	0.81	2.97	4155	547	3	0	4	0	0	logfile
✔	8TKD	41347	2024-02-23	2023-07-25	3.7	2.74	—	3.7	0.002	0.47	0.0	0.03	16.64	0.00	2.042	6.60	0.26	1.8	98.2	0.0	2.98	0.70	0.74	1.30	3.7	0.003	0.52	0.0	0.03	16.25	0.00	1.996	8.83	1.30	2.1	97.8	0.0	2.84	0.60	0.71	0.75	1.62	144368	8996	8	0	12	0	72052	logfile
✔	8TKi	41352	2024-02-24	2023-07-25	3.6	4.33	3.84	3.9	0.002	0.47	0.0	0.04	16.76	0.00	0.845	19.42	0.07	1.6	98.4	0.0	2.93	0.77	0.65	1.27	3.9	0.007	0.66	0.0	0.04	16.22	0.00	1.746	13.84	1.98	4.4	95.6	0.0	1.52	1.45	0.85	0.82	1.45	145816	9072	8	0	12	0	72844	logfile
✔	8TK8	41323	2024-02-27	2023-07-25	2.7	2.30	—	2.8	0.002	0.41	0.0	0.03	12.27	0.00	1.679	2.77	0.69	2.0	98.0	0.0	3.26	0.75	0.80	3.11	2.8	0.004	0.51	0.0	0.04	15.16	0.00	1.493	5.02	1.37	2.7	97.3	0.0	2.30	0.67	0.77	0.84	3.50	146910	9072	8	0	36	0	72830	logfile
✔	8TKF	41349	2024-02-26	2023-07-25	3.2	2.48	—	3.1	0.002	0.79	0.0	0.03	11.62	0.00	2.056	3.94	0.44	2.0	98.0	0.0	3.77	0.72	0.81	2.97	3.1	0.003	0.46	0.0	0.03	13.99	0.00	2.025	5.55	1.21	2.5	97.5	0.0	2.79	0.79	0.77	0.85	3.44	147076	9088	8	0	36	0	72976	logfile
✔	8TKE	41348	2024-02-23	2023-07-25	3.6	2.58	—	3.5	0.002	0.46	0.0	0.03	16.85	0.00	1.947	5.36	0.13	1.4	98.6	0.0	3.69	0.71	0.73	1.81	3.5	0.013	0.77	1.0	0.04	16.63	0.00	1.716	9.94	2.07	3.2	96.8	0.0	2.45	0.60	0.73	0.78	2.50	144372	8996	8	0	16	0	72052	logfile
✔	8TJX	41313	2024-02-13	2023-07-24	2.44	3.10	2.65	2.9	0.006	0.64	0.0	0.04	24.81	0.01	1.872	12.24	0.00	0.0	0.0	0.0	—	0.85	0.85	—	2.9	0.007	0.61	0.0	0.04	24.05	0.01	1.838	11.47	0.00	0.0	0.0	0.0	—	0.81	0.84	0.86	—	7839	0	2	365	27	0	0	logfile
✔	8TJQ	41308	2024-02-14	2023-07-24	3.4	4.09	3.45	3.4	0.005	0.63	0.0	0.03	24.84	0.00	1.883	19.77	0.00	0.0	0.0	0.0	—	0.90	0.85	—	3.4	0.008	0.76	0.0	0.04	24.61	0.01	1.817	25.57	0.00	0.0	0.0	0.0	—	0.19	0.92	0.90	—	9296	0	2	433	28	0	0	logfile
✔	8TJU	41311	2024-02-14	2023-07-24	3.46	4.75	3.48	3.4	0.006	0.67	0.0	0.04	25.59	0.01	1.874	27.33	0.00	0.0	0.0	0.0	—	0.93	0.86	—	3.4	0.008	0.70	0.0	0.04	24.91	0.01	1.784	28.62	0.00	0.0	0.0	0.0	—	0.32	0.94	0.91	—	8771	0	2	409	27	0	0	logfile
✔	8TJV	41312	2024-02-14	2023-07-24	2.99	3.53	2.99	3.1	0.006	0.61	0.0	0.04	24.19	0.00	1.526	10.47	0.00	0.0	0.0	0.0	—	0.91	0.89	—	3.1	0.008	0.70	0.0	0.04	23.53	0.01	1.086	12.37	0.00	0.0	0.0	0.0	—	0.88	0.92	0.92	—	8778	0	2	409	32	0	0	logfile
✔	8K5P	36908	2024-02-24	2023-07-23	2.8	3.48	2.88	3.2	0.002	0.56	0.0	0.04	18.20	0.00	2.104	8.46	2.24	4.5	95.5	0.0	0.74	0.81	0.82	1.68	3.2	0.004	0.64	0.0	0.04	18.52	0.00	2.029	10.00	2.76	5.3	94.6	0.0	0.32	0.48	0.81	0.84	2.15	42713	5127	26	96	11	0	0	logfile
✔	8K5B	36900	2024-02-13	2023-07-21	3.43	3.67	3.31	3.6	0.004	0.72	0.0	0.05	17.22	0.00	2.213	12.54	1.18	5.5	94.5	0.0	0.37	0.48	0.77	1.68	3.6	0.003	0.68	0.0	0.05	18.08	0.00	2.231	12.33	9.84	4.8	95.2	0.0	0.72	0.29	0.48	0.78	1.89	2374	291	2	0	1	0	0	logfile
✔	8K53	36896	2024-02-15	2023-07-21	3.8	3.95	3.74	3.9	0.003	0.63	0.0	0.05	15.22	0.00	2.149	6.63	0.18	4.8	95.1	0.1	0.04	0.73	0.71	1.11	3.9	0.003	0.60	0.0	0.04	14.76	0.00	2.233	7.01	3.28	5.0	94.9	0.1	0.28	0.98	0.73	0.71	1.08	10602	1350	8	0	12	0	0	logfile
✔	8K5H	36906	2024-02-20	2023-07-21	3.22	3.62	3.18	3.4	0.012	0.97	0.0	0.06	16.11	0.01	1.977	13.89	0.14	8.9	91.1	0.0	-1.87	0.84	0.84	2.15	3.4	0.003	0.61	0.0	0.04	16.25	0.00	2.152	7.88	2.27	4.7	95.3	0.0	-0.44	0.51	0.85	0.88	1.96	25502	3171	16	0	50	0	0	logfile
✔	8K5D	36902	2024-02-13	2023-07-21	3.74	3.93	3.66	3.9	0.007	0.76	0.0	0.04	19.08	0.00	2.203	11.34	0.40	5.9	94.1	0.0	0.46	0.52	0.79	2.10	3.9	0.003	0.63	0.0	0.04	19.70	0.00	2.141	10.06	6.48	6.2	93.8	0.0	0.57	0.23	0.52	0.79	1.68	2345	291	2	0	1	0	0	logfile

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