Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8K5D	36902	2024-02-13	2023-07-21	3.74	3.93	3.66	3.9	0.007	0.76	0.0	0.04	19.08	0.00	2.203	11.34	0.40	5.9	94.1	0.0	0.46	0.52	0.79	2.10	3.9	0.003	0.63	0.0	0.04	19.70	0.00	2.141	10.06	6.48	6.2	93.8	0.0	0.57	0.23	0.52	0.79	1.68	2345	291	2	0	1	0	0	logfile
✘	8PWL	17994	2024-02-15	2023-07-20	4.73	5.25	4.85	4.8	0.002	0.51	0.0	0.04	13.55	0.00	2.250	5.28	0.00	2.0	98.0	0.0	-0.12	0.83	0.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12266	1541	2	0	0	0	0	logfile
✔	8TJ2	41298	2024-02-13	2023-07-20	3.0	3.23	3.05	3.2	0.006	0.79	0.0	0.05	13.71	0.01	1.823	8.53	1.67	3.5	96.5	0.0	-1.17	0.63	0.84	3.97	3.2	0.004	0.66	0.0	0.04	14.64	0.00	1.864	6.86	2.24	5.4	94.6	0.0	-0.81	0.46	0.62	0.84	3.37	54252	3744	18	0	0	0	26460	logfile
✔	8TJ3	41299	2024-02-15	2023-07-20	3.2	3.62	—	3.4	0.004	0.72	0.0	0.04	13.85	0.02	2.416	10.13	1.16	7.4	92.4	0.1	0.15	0.73	0.58	0.54	3.4	0.003	0.63	0.0	0.04	15.45	0.00	1.972	16.38	0.72	7.6	92.4	0.0	0.56	1.87	0.79	0.76	1.68	13127	833	2	0	0	0	6652	logfile
✔	8TiB	41283	2024-02-13	2023-07-19	3.47	3.73	3.31	3.7	0.003	0.62	0.0	0.05	16.69	0.00	2.328	7.86	0.34	6.2	93.8	0.0	-1.60	0.32	0.87	1.51	3.7	0.002	0.47	0.0	0.04	16.66	0.00	2.289	5.67	5.10	5.7	94.1	0.3	-0.88	0.28	0.32	0.87	1.53	2667	393	3	0	0	0	0	logfile
✔	8TiF	41286	2024-02-13	2023-07-19	3.89	3.95	3.71	4.1	0.005	0.55	0.0	0.04	17.04	0.00	2.317	8.78	1.02	1.6	98.4	0.0	0.15	0.23	0.85	1.30	4.1	0.002	0.42	0.0	0.04	16.97	0.00	2.337	4.94	2.04	1.6	98.4	0.0	0.98	0.36	0.22	0.85	3.19	889	131	1	0	0	0	0	logfile
✔	8THU	41272	2024-02-15	2023-07-18	3.1	3.86	3.08	3.2	0.004	0.68	0.0	0.04	28.56	0.01	1.528	5.35	0.00	2.2	97.8	0.0	1.40	0.93	0.89	2.77	3.2	0.003	0.56	0.0	0.03	28.34	0.00	2.226	8.63	1.78	2.3	97.7	0.0	2.76	0.27	0.93	0.90	1.90	11902	760	10	291	0	0	0	logfile
✔	8PVV	17973	2024-02-13	2023-07-18	2.81	3.06	2.84	3.0	0.004	0.63	0.0	0.05	18.01	0.01	1.707	10.54	0.33	2.6	97.4	0.0	0.55	0.79	0.81	3.73	3.0	0.004	0.58	0.0	0.04	18.86	0.00	1.887	14.08	2.31	2.1	97.9	0.0	0.84	1.60	0.80	0.82	3.10	6477	656	9	50	1	36	0	logfile
✔	8K3T	36859	2024-02-14	2023-07-17	3.57	4.21	3.75	4.1	0.009	0.93	0.0	0.05	15.00	0.00	2.225	12.40	1.12	4.5	95.5	0.0	0.41	0.60	0.77	1.00	4.1	0.004	0.56	0.0	0.04	15.82	0.00	2.141	9.58	2.35	3.4	96.6	0.0	1.20	1.19	0.59	0.77	0.59	9410	1254	4	2	6	0	0	logfile
✔	8K3Y	36867	2024-02-22	2023-07-17	4.42	8.76	4.94	4.5	0.006	1.15	0.0	0.07	14.64	0.01	2.232	17.66	0.05	6.9	93.1	0.0	-3.10	0.86	0.60	—	4.5	0.003	0.75	0.0	0.05	14.30	0.01	1.984	34.76	0.00	7.5	92.5	0.0	-1.58	0.45	0.89	0.72	—	34589	4396	10	0	4	0	0	logfile
✔	8PVD	17962	2024-02-16	2023-07-17	3.4	3.20	3.34	3.4	0.012	1.85	4.0	0.09	15.25	0.01	2.473	0.43	1.39	3.8	96.0	0.2	-1.14	0.68	0.79	4.47	3.3	0.002	0.59	0.0	0.04	16.49	0.00	2.283	7.76	0.93	3.4	96.7	0.0	0.68	1.01	0.83	0.87	4.21	16512	2008	8	0	8	0	0	logfile
✔	8K45	36877	2024-02-20	2023-07-17	3.66	4.22	3.69	3.9	0.005	0.71	1.0	0.05	17.55	0.01	1.989	10.32	2.13	7.1	92.4	0.5	-0.91	0.84	0.86	1.55	3.9	0.003	0.58	0.0	0.04	17.01	0.00	2.032	9.49	3.95	5.3	94.6	0.2	-0.51	0.32	0.84	0.85	1.58	26877	3338	18	0	48	0	0	logfile
✔	8K4B	36882	2024-02-14	2023-07-17	3.9	4.47	4.31	4.4	0.007	1.40	0.0	0.07	15.60	0.01	2.010	8.38	0.91	7.0	92.8	0.2	-3.82	0.66	0.75	1.21	4.3	0.003	0.77	0.0	0.04	16.73	0.00	1.996	14.28	3.84	7.0	93.0	0.0	-0.85	1.82	0.68	0.80	1.26	8918	1126	4	0	4	0	0	logfile
✔	8PV5	17954	2024-02-23	2023-07-17	2.86	2.91	—	2.9	0.006	0.73	0.0	0.04	21.28	0.02	2.121	4.21	0.01	1.7	98.3	0.0	0.06	0.86	0.81	3.37	2.9	0.006	0.79	0.0	0.04	21.73	0.01	1.854	9.57	1.99	2.8	97.2	0.0	0.60	1.12	0.88	0.85	3.21	144398	9204	62	3331	10	3	0	logfile
✔	8PVi	17967	2024-02-21	2023-07-17	3.7	3.60	3.68	3.7	0.010	1.62	0.0	0.08	15.33	0.01	2.334	1.37	1.13	1.5	98.4	0.1	0.10	0.76	0.77	2.27	3.7	0.003	0.61	0.0	0.04	16.42	0.00	2.090	11.07	1.38	2.3	97.7	0.0	0.56	0.62	0.84	0.83	1.90	30696	4068	6	0	0	0	0	logfile
✔	8PVF	17964	2024-02-14	2023-07-17	2.9	2.56	2.92	3.1	0.010	1.80	4.0	0.09	14.89	0.01	2.413	0.60	1.12	4.2	95.5	0.3	-1.16	0.54	0.80	4.62	3.1	0.005	0.61	0.0	0.05	16.78	0.00	2.193	6.15	5.11	3.6	96.1	0.3	-0.17	1.76	0.69	0.88	4.89	10140	1348	8	0	4	0	0	logfile
✔	8THR	41269	2024-02-13	2023-07-17	3.12	2.56	3.14	3.6	0.013	1.92	1.0	0.11	14.13	0.01	2.537	4.34	0.96	2.1	97.9	0.0	-3.14	0.77	0.75	2.62	3.6	0.004	0.82	0.0	0.04	15.39	0.01	2.091	12.87	1.92	3.4	96.6	0.0	-1.36	0.89	0.76	0.74	1.48	2937	389	2	0	1	0	0	logfile
✔	8PVB	17960	2024-02-17	2023-07-17	3.6	3.05	3.14	3.2	0.010	1.70	0.0	0.09	16.05	0.01	0.000	1.17	1.27	1.6	98.4	0.0	-0.14	0.60	0.79	4.63	3.2	0.004	0.61	0.0	0.04	15.10	0.00	0.000	6.41	1.77	1.2	98.8	0.0	0.62	1.00	0.73	0.84	3.89	19225	2275	25	0	80	0	0	logfile
✔	8K3U	36861	2024-02-14	2023-07-17	3.06	3.51	3.21	3.5	0.009	1.07	0.0	0.06	16.05	0.00	2.072	18.03	0.73	5.9	94.0	0.2	-1.45	0.55	0.67	2.06	3.5	0.004	0.63	0.0	0.04	15.88	0.00	2.102	10.22	2.68	3.0	96.9	0.1	0.59	1.20	0.50	0.67	1.63	8914	1194	4	2	8	0	0	logfile
✘	8K3W	36863	2024-02-15	2023-07-17	2.91	3.20	3.02	3.2	0.009	1.12	0.0	0.07	17.13	0.01	2.285	10.08	2.89	3.7	96.3	0.0	-0.02	0.57	0.73	2.43	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10916	1388	4	0	6	0	0	logfile

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