Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8PVi	17967	2024-02-21	2023-07-17	3.7	3.60	3.68	3.7	0.010	1.62	0.0	0.08	15.33	0.01	2.334	1.37	1.13	1.5	98.4	0.1	0.10	0.76	0.77	2.27	3.7	0.003	0.61	0.0	0.04	16.42	0.00	2.090	11.07	1.38	2.3	97.7	0.0	0.56	0.62	0.84	0.83	1.90	30696	4068	6	0	0	0	0	logfile
✘	8K3W	36863	2024-02-15	2023-07-17	2.91	3.20	3.02	3.2	0.009	1.12	0.0	0.07	17.13	0.01	2.285	10.08	2.89	3.7	96.3	0.0	-0.02	0.57	0.73	2.43	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10916	1388	4	0	6	0	0	logfile
✔	8K3Y	36867	2024-02-22	2023-07-17	4.42	8.76	4.94	4.5	0.006	1.15	0.0	0.07	14.64	0.01	2.232	17.66	0.05	6.9	93.1	0.0	-3.10	0.86	0.60	—	4.5	0.003	0.75	0.0	0.05	14.30	0.01	1.984	34.76	0.00	7.5	92.5	0.0	-1.58	0.45	0.89	0.72	—	34589	4396	10	0	4	0	0	logfile
✔	8PVB	17960	2024-02-17	2023-07-17	3.6	3.05	3.14	3.2	0.010	1.70	0.0	0.09	16.05	0.01	0.000	1.17	1.27	1.6	98.4	0.0	-0.14	0.60	0.79	4.63	3.2	0.004	0.61	0.0	0.04	15.10	0.00	0.000	6.41	1.77	1.2	98.8	0.0	0.62	1.00	0.73	0.84	3.89	19225	2275	25	0	80	0	0	logfile
✔	8PVG	17965	2024-02-24	2023-07-17	3.4	3.70	3.66	3.6	0.009	1.54	12.0	0.08	14.00	0.01	2.147	5.76	1.10	4.6	95.4	0.0	-0.95	0.80	0.84	3.52	3.6	0.003	0.65	0.0	0.04	15.73	0.00	2.181	10.09	1.08	3.6	96.4	0.0	1.29	1.69	0.87	0.89	2.53	40728	5220	12	0	0	0	0	logfile
✔	8K47	36879	2024-02-20	2023-07-17	3.54	4.06	3.41	3.7	0.006	0.91	2.0	0.07	19.11	0.02	2.184	17.62	5.01	9.4	89.0	1.5	-2.01	0.83	0.81	1.32	3.7	0.003	0.65	0.0	0.04	17.17	0.00	2.160	14.06	3.25	8.2	91.6	0.2	-1.52	2.50	0.84	0.83	1.43	26919	3379	20	0	50	0	0	logfile
✔	8K45	36877	2024-02-20	2023-07-17	3.66	4.22	3.69	3.9	0.005	0.71	1.0	0.05	17.55	0.01	1.989	10.32	2.13	7.1	92.4	0.5	-0.91	0.84	0.86	1.55	3.9	0.003	0.58	0.0	0.04	17.01	0.00	2.032	9.49	3.95	5.3	94.6	0.2	-0.51	0.32	0.84	0.85	1.58	26877	3338	18	0	48	0	0	logfile
✔	8K3T	36859	2024-02-14	2023-07-17	3.57	4.21	3.75	4.1	0.009	0.93	0.0	0.05	15.00	0.00	2.225	12.40	1.12	4.5	95.5	0.0	0.41	0.60	0.77	1.00	4.1	0.004	0.56	0.0	0.04	15.82	0.00	2.141	9.58	2.35	3.4	96.6	0.0	1.20	1.19	0.59	0.77	0.59	9410	1254	4	2	6	0	0	logfile
✔	8K3R	36857	2024-02-15	2023-07-16	3.51	4.07	3.61	3.9	0.008	0.86	0.0	0.05	14.85	0.01	2.259	4.36	1.92	2.8	97.2	0.0	0.53	0.61	0.73	1.12	3.9	0.003	0.60	0.0	0.04	16.10	0.00	2.254	7.88	0.96	3.1	96.9	0.0	1.41	0.83	0.60	0.77	0.71	11061	1404	4	0	2	0	0	logfile
✔	8K3P	36855	2024-02-14	2023-07-16	3.64	4.09	3.71	4.0	0.010	0.93	0.0	0.06	15.19	0.00	2.293	9.47	3.22	4.5	95.5	0.0	0.23	0.64	0.79	1.60	4.0	0.002	0.51	0.0	0.04	15.63	0.00	2.207	6.37	2.68	2.3	97.7	0.0	2.15	1.24	0.64	0.81	1.92	9906	1320	4	0	4	0	0	logfile
✔	8K3Q	36856	2024-02-15	2023-07-16	2.6	2.98	2.74	2.9	0.008	0.87	0.0	0.05	14.74	0.01	2.259	4.57	1.89	3.4	96.6	0.0	0.38	0.66	0.82	3.35	2.9	0.003	0.49	0.0	0.04	15.93	0.00	2.275	4.48	1.37	2.5	97.5	0.0	1.65	1.19	0.66	0.83	3.43	11365	1448	4	0	2	0	0	logfile
✔	8THi	41265	2024-02-14	2023-07-16	3.36	3.84	3.37	3.7	0.003	0.51	0.0	0.04	13.99	0.00	2.209	3.02	0.29	1.8	98.2	0.0	2.97	0.71	0.80	1.36	3.7	0.002	0.58	0.0	0.04	15.25	0.00	2.154	6.14	1.38	1.9	98.1	0.0	2.30	1.12	0.72	0.85	1.70	9519	1224	4	0	4	0	0	logfile
✔	8THJ	41266	2024-02-14	2023-07-16	2.99	3.55	3.03	3.4	0.003	0.52	0.0	0.04	14.89	0.00	1.983	5.25	0.88	2.6	97.4	0.0	2.86	0.76	0.87	3.55	3.4	0.003	0.58	0.0	0.04	15.56	0.00	2.132	4.39	1.46	2.3	97.7	0.0	2.12	0.81	0.74	0.86	3.34	9642	1230	4	0	8	0	0	logfile
✔	8PTW	17879	2024-02-16	2023-07-15	2.91	3.20	2.93	3.1	0.004	0.78	0.0	0.05	11.31	0.01	2.299	3.99	0.00	1.8	98.2	0.0	0.35	0.78	0.81	3.44	3.1	0.004	0.59	0.0	0.04	13.74	0.01	2.169	7.21	0.95	1.6	98.4	0.0	2.05	0.35	0.79	0.84	2.79	14242	1878	4	0	0	0	0	logfile
✔	8K35	36844	2024-02-23	2023-07-14	3.44	3.71	3.05	3.7	0.004	0.60	0.0	0.04	12.73	0.00	2.079	5.25	0.00	2.7	97.3	0.0	-1.02	0.81	0.87	3.12	3.7	0.002	0.50	0.0	0.04	14.48	0.00	2.089	4.56	1.90	2.7	97.3	0.0	-0.72	0.31	0.79	0.88	2.42	40353	5184	27	0	3	0	0	logfile
✔	8K34	36843	2024-02-13	2023-07-14	2.81	3.42	2.84	3.2	0.004	0.74	0.0	0.04	17.75	0.00	2.000	16.66	2.07	3.9	96.1	0.0	-0.23	0.68	0.68	1.79	3.2	0.004	0.69	0.0	0.04	17.99	0.00	1.971	17.36	3.75	5.1	94.9	0.0	-0.21	0.38	0.69	0.69	1.48	7187	863	4	4	1	0	0	logfile
✔	8K37	36846	2024-02-17	2023-07-14	3.5	3.55	3.46	3.6	0.006	0.69	4.0	0.05	13.20	0.00	2.224	5.93	0.41	2.4	97.6	0.0	-0.80	0.70	0.85	2.95	3.5	0.002	0.58	0.0	0.04	15.50	0.00	2.227	6.04	3.12	1.9	98.0	0.0	-0.47	0.54	0.70	0.85	2.30	18528	2394	18	0	0	0	0	logfile
✔	8K39	36848	2024-02-17	2023-07-14	4.0	3.96	3.71	3.9	0.005	0.69	7.0	0.05	14.31	0.01	2.196	7.53	0.24	5.7	94.0	0.3	-0.79	0.61	0.85	—	3.9	0.004	0.62	0.0	0.04	16.45	0.00	2.125	8.65	3.33	6.2	93.7	0.1	-0.84	0.33	0.62	0.85	—	124618	15849	42	0	0	0	0	logfile
✔	8K38	36847	2024-02-25	2023-07-14	3.2	3.30	3.16	3.3	0.003	0.52	1.0	0.04	12.99	0.00	2.215	4.22	0.12	1.7	98.3	0.0	1.76	0.74	0.88	3.22	3.3	0.005	0.54	0.0	0.04	15.60	0.00	2.149	4.00	2.01	1.9	98.1	0.0	1.53	0.46	0.74	0.91	2.77	50172	6396	24	0	0	0	0	logfile
✔	8K2X	36842	2024-02-14	2023-07-14	3.2	3.52	3.20	3.4	0.003	0.57	0.0	0.04	16.75	0.00	2.283	9.17	0.00	4.6	95.4	0.0	0.69	0.83	0.89	2.38	3.4	0.003	0.57	0.0	0.04	17.17	0.00	2.121	8.49	3.85	5.4	94.6	0.0	0.73	0.24	0.83	0.90	2.55	8900	1138	7	0	1	0	0	logfile

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